├── .coveragerc ├── .github ├── dependabot.yml └── workflows │ └── pythonpackage.yml ├── .gitignore ├── .readthedocs.yml ├── .travis.yml ├── CHANGELOG.md ├── CITATION.cff ├── CONTRIBUTING.md ├── INSTALL.md ├── LICENSE ├── MANIFEST.in ├── README.md ├── TODO.md ├── _config.yml ├── docs ├── Makefile ├── _build │ ├── doctrees │ │ ├── dyconnmap.chronnectomics.doctree │ │ ├── dyconnmap.cluster.doctree │ │ ├── dyconnmap.doctree │ │ ├── dyconnmap.fc.doctree │ │ ├── dyconnmap.graphs.doctree │ │ ├── dyconnmap.sim_models.doctree │ │ ├── dyconnmap.ts.doctree │ │ ├── environment.pickle │ │ ├── index.doctree │ │ └── modules.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _modules │ │ ├── dyconnmap │ │ │ ├── analytic_signal.html │ │ │ ├── chronnectomics │ │ │ │ ├── dwell_time.html │ │ │ │ ├── flexibility_index.html │ │ │ │ └── occupancy_time.html │ │ │ ├── cluster │ │ │ │ ├── cluster.html │ │ │ │ ├── gng.html │ │ │ │ ├── mng.html │ │ │ │ ├── ng.html │ │ │ │ ├── rng.html │ │ │ │ ├── som.html │ │ │ │ ├── umatrix.html │ │ │ │ └── validity.html │ │ │ ├── fc │ │ │ │ ├── aec.html │ │ │ │ ├── biplv.html │ │ │ │ ├── coherence.html │ │ │ │ ├── corr.html │ │ │ │ ├── cos.html │ │ │ │ ├── crosscorr.html │ │ │ │ ├── dpli.html │ │ │ │ ├── esc.html │ │ │ │ ├── estimator.html │ │ │ │ ├── glm.html │ │ │ │ ├── icoherence.html │ │ │ │ ├── iplv.html │ │ │ │ ├── mui.html │ │ │ │ ├── nesc.html │ │ │ │ ├── pac.html │ │ │ │ ├── partcorr.html │ │ │ │ ├── pec.html │ │ │ │ ├── pli.html │ │ │ │ ├── plv.html │ │ │ │ ├── rho_index.html │ │ │ │ └── wpli.html │ │ │ ├── graphs │ │ │ │ ├── e2e.html │ │ │ │ ├── gdd.html │ │ │ │ ├── imd.html │ │ │ │ ├── laplacian_energy.html │ │ │ │ ├── mi.html │ │ │ │ ├── mpc.html │ │ │ │ ├── nodal.html │ │ │ │ ├── spectral_euclidean_distance.html │ │ │ │ ├── spectral_k_distance.html │ │ │ │ ├── threshold.html │ │ │ │ └── vi.html │ │ │ ├── sim_models │ │ │ │ └── makinen.html │ │ │ ├── sliding_window.html │ │ │ ├── ts │ │ │ │ ├── ci.html │ │ │ │ ├── cv.html │ │ │ │ ├── dcorr.html │ │ │ │ ├── embed_delay.html │ │ │ │ ├── entropy.html │ │ │ │ ├── fisher_score.html │ │ │ │ ├── fisher_z.html │ │ │ │ ├── fnn.html │ │ │ │ ├── icc.html │ │ │ │ ├── markov_matrix.html │ │ │ │ ├── ordinal_pattern_similarity.html │ │ │ │ ├── permutation_entropy.html │ │ │ │ ├── rr_order_patterns.html │ │ │ │ ├── sampen.html │ │ │ │ ├── ste.html │ │ │ │ ├── surrogates.html │ │ │ │ ├── teager_kaiser_energy.html │ │ │ │ └── wald.html │ │ │ └── tvfcgs.html │ │ └── index.html │ │ ├── _sources │ │ ├── dyconnmap.chronnectomics.rst.txt │ │ ├── dyconnmap.cluster.rst.txt │ │ ├── dyconnmap.fc.rst.txt │ │ ├── dyconnmap.graphs.rst.txt │ │ ├── dyconnmap.rst.txt │ │ ├── dyconnmap.sim_models.rst.txt │ │ ├── dyconnmap.ts.rst.txt │ │ ├── index.rst.txt │ │ └── modules.rst.txt │ │ ├── _static │ │ ├── basic.css │ │ ├── css │ │ │ ├── badge_only.css │ │ │ ├── fonts │ │ │ │ ├── Roboto-Slab-Bold.woff │ │ │ │ ├── Roboto-Slab-Bold.woff2 │ │ │ │ ├── Roboto-Slab-Regular.woff │ │ │ │ ├── Roboto-Slab-Regular.woff2 │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── fontawesome-webfont.woff2 │ │ │ │ ├── lato-bold-italic.woff │ │ │ │ ├── lato-bold-italic.woff2 │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-normal-italic.woff │ │ │ │ ├── lato-normal-italic.woff2 │ │ │ │ ├── lato-normal.woff │ │ │ │ └── lato-normal.woff2 │ │ │ └── theme.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── file.png │ │ ├── fonts │ │ │ ├── FontAwesome.otf │ │ │ ├── Lato │ │ │ │ ├── lato-bold.eot │ │ │ │ ├── lato-bold.ttf │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-bolditalic.eot │ │ │ │ ├── lato-bolditalic.ttf │ │ │ │ ├── lato-bolditalic.woff │ │ │ │ ├── lato-bolditalic.woff2 │ │ │ │ ├── lato-italic.eot │ │ │ │ ├── lato-italic.ttf │ │ │ │ ├── lato-italic.woff │ │ │ │ ├── lato-italic.woff2 │ │ │ │ ├── lato-regular.eot │ │ │ │ ├── lato-regular.ttf │ │ │ │ ├── lato-regular.woff │ │ │ │ └── lato-regular.woff2 │ │ │ ├── Roboto-Slab-Bold.woff │ │ │ ├── Roboto-Slab-Bold.woff2 │ │ │ ├── Roboto-Slab-Light.woff │ │ │ ├── Roboto-Slab-Light.woff2 │ │ │ ├── Roboto-Slab-Regular.woff │ │ │ ├── Roboto-Slab-Regular.woff2 │ │ │ ├── Roboto-Slab-Thin.woff │ │ │ ├── Roboto-Slab-Thin.woff2 │ │ │ ├── RobotoSlab │ │ │ │ ├── roboto-slab-v7-bold.eot │ │ │ │ ├── roboto-slab-v7-bold.ttf │ │ │ │ ├── roboto-slab-v7-bold.woff │ │ │ │ ├── roboto-slab-v7-bold.woff2 │ │ │ │ ├── roboto-slab-v7-regular.eot │ │ │ │ ├── roboto-slab-v7-regular.ttf │ │ │ │ ├── roboto-slab-v7-regular.woff │ │ │ │ └── roboto-slab-v7-regular.woff2 │ │ │ ├── fontawesome-webfont.eot │ │ │ ├── fontawesome-webfont.svg │ │ │ ├── fontawesome-webfont.ttf │ │ │ ├── fontawesome-webfont.woff │ │ │ ├── fontawesome-webfont.woff2 │ │ │ ├── lato-bold-italic.woff │ │ │ ├── lato-bold-italic.woff2 │ │ │ ├── lato-bold.woff │ │ │ ├── lato-bold.woff2 │ │ │ ├── lato-normal-italic.woff │ │ │ ├── lato-normal-italic.woff2 │ │ │ ├── lato-normal.woff │ │ │ └── lato-normal.woff2 │ │ ├── jquery-3.5.1.js │ │ ├── jquery.js │ │ ├── js │ │ │ ├── badge_only.js │ │ │ ├── html5shiv-printshiv.min.js │ │ │ ├── html5shiv.min.js │ │ │ ├── modernizr.min.js │ │ │ └── theme.js │ │ ├── language_data.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── underscore-1.3.1.js │ │ └── underscore.js │ │ ├── dyconnmap.chronnectomics.html │ │ ├── dyconnmap.cluster.html │ │ ├── dyconnmap.fc.html │ │ ├── dyconnmap.graphs.html │ │ ├── dyconnmap.html │ │ ├── dyconnmap.sim_models.html │ │ ├── dyconnmap.ts.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── modules.html │ │ ├── objects.inv │ │ ├── py-modindex.html │ │ ├── search.html │ │ └── searchindex.js ├── _templates │ ├── class.rst │ └── class_with_call.rst ├── conf.py ├── dyconnmap.chronnectomics.rst ├── dyconnmap.cluster.rst ├── dyconnmap.fc.rst ├── dyconnmap.graphs.rst ├── dyconnmap.rst ├── dyconnmap.sim_models.rst ├── dyconnmap.ts.rst ├── index.rst ├── make.bat ├── modules.rst ├── pipeline1_poster.svg.png ├── sphinxext │ ├── LICENSE.txt │ ├── MANIFEST.in │ ├── README.txt │ ├── gen_rst.py │ └── github_link.py └── v2_pipeline.png ├── dyconnmap ├── __init__.py ├── analytic_signal.py ├── bands.py ├── chronnectomics │ ├── __init__.py │ ├── dwell_time.py │ ├── flexibility_index.py │ └── occupancy_time.py ├── cluster │ ├── __init__.py │ ├── cluster.py │ ├── gng.py │ ├── mng.py │ ├── ng.py │ ├── rng.py │ ├── som.py │ ├── umatrix.py │ └── validity.py ├── fc │ ├── __init__.py │ ├── aec.py │ ├── biplv.py │ ├── coherence.py │ ├── corr.py │ ├── cos.py │ ├── crosscorr.py │ ├── dpli.py │ ├── esc.py │ ├── estimator.py │ ├── glm.py │ ├── icoherence.py │ ├── iplv.py │ ├── mui.py │ ├── nesc.py │ ├── pac.py │ ├── partcorr.py │ ├── pec.py │ ├── pli.py │ ├── plv.py │ ├── rho_index.py │ └── wpli.py ├── graphs │ ├── __init__.py │ ├── e2e.py │ ├── gdd.py │ ├── imd.py │ ├── laplacian_energy.py │ ├── mi.py │ ├── mpc.py │ ├── nodal.py │ ├── spectral_euclidean_distance.py │ ├── spectral_k_distance.py │ ├── threshold.py │ └── vi.py ├── sim_models │ ├── __init__.py │ └── makinen.py ├── sliding_window.py ├── ts │ ├── __init__.py │ ├── ci.py │ ├── cv.py │ ├── dcorr.py │ ├── embed_delay.py │ ├── entropy.py │ ├── fisher_score.py │ ├── fisher_z.py │ ├── fnn.py │ ├── icc.py │ ├── markov_matrix.py │ ├── mypy.ini │ ├── ordinal_pattern_similarity.py │ ├── permutation_entropy.py │ ├── rr_order_patterns.py │ ├── sampen.py │ ├── ste.py │ ├── surrogates.py │ ├── teager_kaiser_energy.py │ └── wald.py └── tvfcgs.py ├── environment.yml ├── examples ├── cluster_ng.py ├── cluster_som.py ├── data │ ├── 10secs.mat │ ├── chronnectomics_sts.npy │ ├── eeg_32chans_10secs.npy │ ├── random_timeseries.npy │ ├── rois39_samples100.npy │ ├── ts_lorenz.npy │ └── wald_test_ts.npy ├── fc_aec.py ├── fc_coherence.py ├── fc_corr.py ├── fc_dpli.py ├── fc_esc.py ├── fc_glm.py ├── fc_iplv.py ├── fc_mi.py ├── fc_mui.py ├── fc_nesc.py ├── fc_pac.py ├── fc_pec.py ├── fc_pli.py ├── fc_plv.py ├── fc_si.py ├── fc_sl.py ├── fc_wpli.py ├── fcmicrostates.py ├── graphs_gdd.py ├── graphs_mi.py ├── graphs_nodal.py ├── graphs_vi.py ├── microstates.py ├── modwt.py ├── python_comodulogram.py ├── python_mp.py ├── python_phasesync_user-defined_estimator.py ├── python_try_new_class_system.py ├── sim_models_maniken.py ├── sliding_window1.py ├── ts_ci.py ├── ts_embed_delay.py ├── ts_markov_matrix.py ├── ts_sampen.py ├── ts_surrogates.py ├── ts_teager_kaiser_operator.py ├── ts_wald.py ├── tvfcgs.py ├── tvfcgs_corr.py └── tvfcgs_icoh.py ├── logo ├── github_banner.png ├── github_banner.xcf ├── logo.png ├── logo.svg ├── logo_640.png ├── logo_640.xcf └── logo_v2.svg ├── package.json ├── postBuild ├── requirements.txt ├── setup.cfg ├── setup.py ├── setup_tag.py ├── template_file.py ├── tests ├── README.md ├── __init__.py ├── data │ ├── test_graphs_vi_mtx1_30x30.npy │ ├── test_graphs_vi_mtx2_30x30.npy │ ├── test_mi_avg.npy │ ├── test_mi_ts.npy │ ├── test_sliding_indices1.npy │ ├── test_sliding_indices3.npy │ ├── test_sliding_indices6.npy │ ├── test_sliding_window.npy │ ├── test_ts_afft.npy │ ├── test_ts_ci_complexity_index.npy │ ├── test_ts_ci_spectrum.npy │ ├── test_ts_ci_ts.npy │ ├── test_ts_cstr.npy │ ├── test_ts_dissimilarity.npy │ ├── test_ts_embedded_ts.npy │ ├── test_ts_fnn.npy │ ├── test_ts_markov_oc.npy │ ├── test_ts_markov_tr.npy │ ├── test_ts_n_permutation_entropy.npy │ ├── test_ts_ordinal_patterns.npy │ ├── test_ts_patterns_distribution.npy │ ├── test_ts_permutation_entropy.npy │ ├── test_ts_phase_rand.npy │ ├── test_ts_surrogates.npy │ ├── test_ts_surrogates2.npy │ ├── test_ts_surrogates2_fdr_h.npy │ ├── test_ts_surrogates2_p_val.npy │ ├── test_ts_surrogates_corr.npy │ ├── test_ts_surrogates_fdr_crit_p.npy │ ├── test_ts_surrogates_fdr_h.npy │ ├── test_ts_surrogates_p_val.npy │ ├── ts_markov_chain.npy │ └── ts_tko.npy ├── groundtruth │ ├── chronnectomics │ │ ├── dwell_mean.npy │ │ ├── dwell_std.npy │ │ ├── dwell_time.npy │ │ ├── flexibility_index.npy │ │ └── occupancy_time.npy │ ├── cluster │ │ ├── gng_protos.npy │ │ ├── gng_symbols.npy │ │ ├── mng_protos.npy │ │ ├── ng_protos.npy │ │ ├── ng_symbols.npy │ │ ├── rng_protos.npy │ │ ├── rng_symbols.npy │ │ ├── som_protos.npy │ │ └── som_umatrix.npy │ ├── cluster_validity │ │ ├── davies_bouldin.npy │ │ ├── ray_turi.npy │ │ └── ray_turi_with_missing_labels.npy │ ├── fc │ │ ├── aec.npy │ │ ├── coherence.npy │ │ ├── corr.npy │ │ ├── cos.npy │ │ ├── cos_nofilter.npy │ │ ├── crosscorr.npy │ │ ├── dpli.npy │ │ ├── dwpli.npy │ │ ├── esc.npy │ │ ├── glm_avg.npy │ │ ├── glm_ts.npy │ │ ├── icoherence.npy │ │ ├── iplv_avg.npy │ │ ├── iplv_nofilter_avg.npy │ │ ├── iplv_nofilter_ts.npy │ │ ├── iplv_ts.npy │ │ ├── nesc.npy │ │ ├── pac_plv_avg.npy │ │ ├── pac_plv_ts.npy │ │ ├── partcorr.npy │ │ ├── pec.npy │ │ ├── pli_avg.npy │ │ ├── pli_ts.npy │ │ ├── plv_avg.npy │ │ ├── plv_ts.npy │ │ ├── rho_index.npy │ │ └── wpli.npy │ ├── graphs │ │ ├── mlgraph_e2e_expected_result.npy │ │ ├── mlgraph_mst_pc_degree.npy │ │ ├── mlgraph_pc_gamma.npy │ │ ├── mlgraph_pc_strength.npy │ │ └── nodal_global_efficiency.npy │ ├── graphs_threshold │ │ ├── eco_binary.npy │ │ ├── eco_filtered.npy │ │ ├── gce.npy │ │ ├── k_cores.npy │ │ ├── mean_degree.npy │ │ ├── mst_mean_degree.npy │ │ ├── omst_gce.npy │ │ └── shortest_paths.npy │ └── tvfcgs │ │ ├── compute_windows_window_length.npy │ │ ├── compute_windows_windows.npy │ │ ├── from_plv_ts.npy │ │ ├── pac_plv.npy │ │ └── plv.npy ├── sample_data │ ├── chronnectomics │ │ └── symbolic_timeseries.npy │ ├── cluster_validity │ │ ├── data.npy │ │ └── symbols.npy │ ├── fc │ │ ├── eeg_32chans_10secs.npy │ │ └── rois39_samples100.npy │ ├── graphs │ │ ├── gdd_mtx1_5x5.npy │ │ ├── gdd_mtx2_5x5.npy │ │ ├── inv_mtx.npy │ │ ├── mlgraph.npy │ │ ├── mlgraph_e2e.npy │ │ ├── mlgraph_mst.npy │ │ ├── spectral_mtx1_10x10.npy │ │ ├── spectral_mtx2_10x10.npy │ │ ├── vi_mtx1_30x30_comm_struct.npy │ │ └── 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