├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── R ├── EGSEAclass.R ├── GSCollectionIndexclass.R ├── arraydata.R ├── egseaAux.R ├── egseaMain.R ├── egseaReport.R ├── egseaUtils.R ├── fisher.method.R ├── gsacamera.R ├── gsafry.R ├── gsagage.R ├── gsaglobaltest.R ├── gsagsva.R ├── gsaora.R ├── gsapadog.R ├── gsaplots.R ├── gsaroast.R ├── gsasafe.R ├── htmlUtils.R ├── idxAnno.R └── wrapperUtils.R ├── README.md ├── data └── arraydata.rda ├── inst ├── CITATION └── logo │ └── EGSEA_logo.png ├── man ├── EGSEA-package.Rd ├── EGSEAResults-methods.Rd ├── GSCollectionIndex-methods.Rd ├── arraydata.Rd ├── egsea-aux.Rd ├── egsea-index.Rd └── egsea-main.Rd ├── tests ├── testthat.R └── testthat │ └── test_EGSEA.R └── vignettes ├── EGSEA.Rnw ├── egsea_classes-crop.pdf ├── egsea_report-crop.pdf ├── egsea_results-crop.pdf └── references.bib /.gitignore: -------------------------------------------------------------------------------- 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