├── .coveragerc ├── .github └── workflows │ └── package_install.yml ├── .gitignore ├── .isort.cfg ├── .pre-commit-config.yaml ├── .readthedocs.yml ├── AUTHORS.rst ├── CHANGELOG.rst ├── CONTRIBUTING.rst ├── LICENSE.txt ├── README.md ├── docs ├── Makefile ├── _static │ └── .gitignore ├── authors.rst ├── changelog.rst ├── conf.py ├── contributing.rst ├── index.rst ├── license.rst ├── readme.rst └── requirements.txt ├── example ├── data │ ├── n20_p1k.SampleN.tsv │ └── n20_p1k.Zscore.tsv.gz ├── result │ ├── demo_old.Wm.tsv.gz │ ├── demo_old.Wvar.tsv.gz │ ├── demo_old.Zm.tsv.gz │ ├── demo_old.Zvar.tsv.gz │ ├── demo_old.factor.tsv.gz │ ├── demo_test.Wm.tsv.gz │ ├── demo_test.Wvar.tsv.gz │ ├── demo_test.Zm.tsv.gz │ ├── demo_test.Zvar.tsv.gz │ ├── demo_test.factor.tsv.gz │ ├── test.Wm.tsv.gz │ ├── test.Wvar.tsv.gz │ ├── test.Zm.tsv.gz │ ├── test.Zvar.tsv.gz │ └── test.factor.tsv.gz ├── runFactorGo.old.py ├── run_demo.sh └── test_skeleton.py ├── mypy.ini ├── pyproject.toml ├── requirements.txt ├── requirements_dev.txt ├── setup.cfg ├── setup.py ├── src └── factorgo │ ├── __init__.py │ ├── cli.py │ ├── infer.py │ ├── io.py │ └── util.py ├── tests ├── conftest.py ├── test_factorgo.py └── utils.py └── tox.ini /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mancusolab/FactorGo/HEAD/.coveragerc -------------------------------------------------------------------------------- /.github/workflows/package_install.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mancusolab/FactorGo/HEAD/.github/workflows/package_install.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mancusolab/FactorGo/HEAD/.gitignore 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