├── .DS_Store ├── .gitignore ├── MetaModel_complex_tasks.ipynb ├── Metamodel.ipynb ├── README.md ├── data ├── __init__.py ├── datasets.py ├── datastore │ └── landmarkgenes.npy ├── gene_graphs.py ├── genenames_code_map_Feb2019.txt ├── geo │ ├── array-geo-series-human.csv │ ├── hts-geo-series-human.csv │ └── hts-geo-series.csv ├── graphs │ ├── HumanNet-XN.tsv │ ├── HumanNet.v1.benchmark.txt │ ├── ensembl_to_hugo.tsv │ ├── enterez_NCBI_to_hugo_gene_symbol_march_2019.txt │ └── stringdb_graph_all_edges.adjlist ├── img │ └── pipeline.png └── utils.py ├── meta_dataloader ├── ._.DS_Store ├── ._TCGA.py ├── .gitignore ├── LICENSE ├── README.md ├── TCGA.py ├── __init__.py ├── cancers ├── task_variables ├── torchmeta │ ├── __init__.py │ ├── class_transforms │ │ ├── __init__.py │ │ ├── flip.py │ │ └── rotation.py │ ├── dataloader.py │ ├── dataset.py │ ├── datasets │ │ ├── __init__.py │ │ └── omniglot.py │ └── sampler.py └── utils.py ├── new_notebook_TCGA_benchmark.ipynb ├── results ├── .DS_Store ├── KNN_result_10seeds.csv ├── List_of_valid_tasks ├── LogisticRegression_result_10seeds.csv ├── MLP_result_10seeds.csv ├── Majority_result_10seeds.csv ├── model_comparison.png ├── new_result_plot_with_error_bars.png └── results_all_model.png ├── results_all_model.png ├── tcga_MLP_hyperparameter_search.ipynb ├── tcga_benchmark.ipynb ├── tcga_benchmark.py └── visualization .ipynb /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandanasmi/TCGA_Benchmark/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandanasmi/TCGA_Benchmark/HEAD/.gitignore -------------------------------------------------------------------------------- /MetaModel_complex_tasks.ipynb: -------------------------------------------------------------------------------- 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