├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── rhub.yaml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── .Rapp.history ├── EM_diagnosticICA.R ├── EM_templateICA.R ├── INLA_check.R ├── MIGP.R ├── VB_FCtemplateICA.R ├── activations.R ├── activations.methods.R ├── activations_utils.R ├── check_parallel_packages.R ├── dim_reduce.R ├── dual_reg2.R ├── estimate_template.R ├── estimate_template.methods.R ├── estimate_template.utils.R ├── export_template.R ├── groupICA.R ├── ignore.R ├── make_mesh.R ├── norm_BOLD.R ├── orthonorm.R ├── removebs_template.R ├── resample_template.R ├── rm_nuisIC.R ├── rox_args_docs.R ├── templateICA.R ├── templateICA.methods.R └── utils.R ├── README.Rmd ├── README.md ├── codecov.yml ├── cran-comments.md ├── inst ├── CITATION ├── REFERENCES ├── REFERENCES.bib └── extdata │ └── HCP_template_25.rds ├── man ├── Chol_samp_fun.Rd ├── EM_templateICA.Rd ├── GSR_Param.Rd ├── INLA_check.Rd ├── IW_var.Rd ├── IW_var_cor.Rd ├── LL2_kappa.Rd ├── LL_SQUAREM.Rd ├── Q2_max_check.Rd ├── TR_param.Rd ├── UT2mat.Rd ├── UpdateThetaSQUAREM_templateICA.Rd ├── UpdateTheta_templateICA.Rd ├── VB_FCtemplateICA.Rd ├── activations.Rd ├── add_str.Rd ├── bdiag_m.Rd ├── bdiag_m2.Rd ├── check_parallel_packages.Rd ├── check_req_ifti_pkg.Rd ├── compute_LL_std.Rd ├── compute_R_inv.Rd ├── compute_mu_s.Rd ├── dim_reduce.Rd ├── dual_reg2.Rd ├── estimate.ESS.Rd ├── estimate_nu.Rd ├── estimate_nu_matrix.Rd ├── estimate_template.Rd ├── estimate_template_FC.Rd ├── estimate_template_from_DR.Rd ├── estimate_template_from_DR_two.Rd ├── export_template.Rd ├── format_activation_name.Rd ├── getInvCovAR.Rd ├── get_FORMAT.Rd ├── groupICA.cifti.Rd ├── halflogdetX.Rd ├── hpf_param.Rd ├── lik.Rd ├── loglik_kappa_est.Rd ├── make_Pmat.Rd ├── make_mask.Rd ├── make_mesh.Rd ├── make_mesh_2D.Rd ├── norm_BOLD.Rd ├── orthonorm.Rd ├── plot.tICA.cifti.Rd ├── plot.tICA.matrix.Rd ├── plot.tICA.nifti.Rd ├── plot.tICA_act.cifti.Rd ├── plot.template.cifti.Rd ├── plot.template.gifti.Rd ├── plot.template.matrix.Rd ├── plot.template.nifti.Rd ├── pw_estimate.Rd ├── removebs_template.Rd ├── resample_template.Rd ├── rm_nuisIC.Rd ├── scale_Param.Rd ├── sqrt_XtX.Rd ├── struct_template.Rd ├── summary.tICA.cifti.Rd ├── summary.tICA.matrix.Rd ├── summary.tICA.nifti.Rd ├── summary.tICA_act.cifti.Rd ├── summary.tICA_act.matrix.Rd ├── summary.tICA_act.nifti.Rd ├── summary.template.cifti.Rd ├── summary.template.gifti.Rd ├── summary.template.matrix.Rd ├── summary.template.nifti.Rd ├── templateICA.Rd ├── update_A.Rd ├── update_A_Chol.Rd ├── update_S.Rd ├── update_tau2.Rd ├── varTol_Param.Rd ├── var_sq_err.Rd └── var_sq_err_constrained.Rd ├── templateICAr.Rproj └── tests ├── run_templateICAr_tests.R ├── run_templateICAr_tests_notInPackage.R ├── testthat.R └── testthat └── test-misc.R /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.github/workflows/rhub.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/.github/workflows/rhub.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/.Rapp.history: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /R/EM_diagnosticICA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/EM_diagnosticICA.R -------------------------------------------------------------------------------- /R/EM_templateICA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/EM_templateICA.R -------------------------------------------------------------------------------- /R/INLA_check.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/INLA_check.R -------------------------------------------------------------------------------- /R/MIGP.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/MIGP.R -------------------------------------------------------------------------------- /R/VB_FCtemplateICA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/VB_FCtemplateICA.R -------------------------------------------------------------------------------- /R/activations.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/activations.R -------------------------------------------------------------------------------- /R/activations.methods.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/activations.methods.R -------------------------------------------------------------------------------- /R/activations_utils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/activations_utils.R -------------------------------------------------------------------------------- /R/check_parallel_packages.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/check_parallel_packages.R -------------------------------------------------------------------------------- /R/dim_reduce.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/dim_reduce.R -------------------------------------------------------------------------------- /R/dual_reg2.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/dual_reg2.R -------------------------------------------------------------------------------- /R/estimate_template.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/estimate_template.R -------------------------------------------------------------------------------- /R/estimate_template.methods.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/estimate_template.methods.R -------------------------------------------------------------------------------- /R/estimate_template.utils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/estimate_template.utils.R -------------------------------------------------------------------------------- /R/export_template.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/export_template.R -------------------------------------------------------------------------------- /R/groupICA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/groupICA.R -------------------------------------------------------------------------------- /R/ignore.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/ignore.R -------------------------------------------------------------------------------- /R/make_mesh.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/make_mesh.R -------------------------------------------------------------------------------- /R/norm_BOLD.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/norm_BOLD.R -------------------------------------------------------------------------------- /R/orthonorm.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/orthonorm.R -------------------------------------------------------------------------------- /R/removebs_template.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/removebs_template.R -------------------------------------------------------------------------------- /R/resample_template.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/resample_template.R -------------------------------------------------------------------------------- /R/rm_nuisIC.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/rm_nuisIC.R -------------------------------------------------------------------------------- /R/rox_args_docs.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/rox_args_docs.R -------------------------------------------------------------------------------- /R/templateICA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/templateICA.R -------------------------------------------------------------------------------- /R/templateICA.methods.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/templateICA.methods.R -------------------------------------------------------------------------------- /R/utils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/R/utils.R -------------------------------------------------------------------------------- /README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/README.Rmd -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/README.md -------------------------------------------------------------------------------- /codecov.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/codecov.yml -------------------------------------------------------------------------------- /cran-comments.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/cran-comments.md -------------------------------------------------------------------------------- /inst/CITATION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/inst/CITATION -------------------------------------------------------------------------------- /inst/REFERENCES: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/inst/REFERENCES -------------------------------------------------------------------------------- /inst/REFERENCES.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/inst/REFERENCES.bib -------------------------------------------------------------------------------- /inst/extdata/HCP_template_25.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/inst/extdata/HCP_template_25.rds -------------------------------------------------------------------------------- /man/Chol_samp_fun.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/Chol_samp_fun.Rd -------------------------------------------------------------------------------- /man/EM_templateICA.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/EM_templateICA.Rd -------------------------------------------------------------------------------- /man/GSR_Param.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/GSR_Param.Rd -------------------------------------------------------------------------------- /man/INLA_check.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/INLA_check.Rd -------------------------------------------------------------------------------- /man/IW_var.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/IW_var.Rd -------------------------------------------------------------------------------- /man/IW_var_cor.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/IW_var_cor.Rd -------------------------------------------------------------------------------- /man/LL2_kappa.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/LL2_kappa.Rd -------------------------------------------------------------------------------- /man/LL_SQUAREM.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/LL_SQUAREM.Rd -------------------------------------------------------------------------------- /man/Q2_max_check.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/Q2_max_check.Rd -------------------------------------------------------------------------------- /man/TR_param.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/TR_param.Rd -------------------------------------------------------------------------------- /man/UT2mat.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/UT2mat.Rd -------------------------------------------------------------------------------- /man/UpdateThetaSQUAREM_templateICA.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/UpdateThetaSQUAREM_templateICA.Rd -------------------------------------------------------------------------------- /man/UpdateTheta_templateICA.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/UpdateTheta_templateICA.Rd -------------------------------------------------------------------------------- /man/VB_FCtemplateICA.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/VB_FCtemplateICA.Rd -------------------------------------------------------------------------------- /man/activations.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/activations.Rd -------------------------------------------------------------------------------- /man/add_str.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/add_str.Rd -------------------------------------------------------------------------------- /man/bdiag_m.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/bdiag_m.Rd -------------------------------------------------------------------------------- /man/bdiag_m2.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/bdiag_m2.Rd -------------------------------------------------------------------------------- /man/check_parallel_packages.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/check_parallel_packages.Rd -------------------------------------------------------------------------------- /man/check_req_ifti_pkg.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/check_req_ifti_pkg.Rd -------------------------------------------------------------------------------- /man/compute_LL_std.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/compute_LL_std.Rd -------------------------------------------------------------------------------- /man/compute_R_inv.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/compute_R_inv.Rd -------------------------------------------------------------------------------- /man/compute_mu_s.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/compute_mu_s.Rd -------------------------------------------------------------------------------- /man/dim_reduce.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/dim_reduce.Rd -------------------------------------------------------------------------------- /man/dual_reg2.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/dual_reg2.Rd -------------------------------------------------------------------------------- /man/estimate.ESS.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/estimate.ESS.Rd -------------------------------------------------------------------------------- /man/estimate_nu.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/estimate_nu.Rd -------------------------------------------------------------------------------- /man/estimate_nu_matrix.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/estimate_nu_matrix.Rd -------------------------------------------------------------------------------- /man/estimate_template.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/estimate_template.Rd -------------------------------------------------------------------------------- /man/estimate_template_FC.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/estimate_template_FC.Rd -------------------------------------------------------------------------------- /man/estimate_template_from_DR.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/estimate_template_from_DR.Rd -------------------------------------------------------------------------------- /man/estimate_template_from_DR_two.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/estimate_template_from_DR_two.Rd -------------------------------------------------------------------------------- /man/export_template.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/export_template.Rd -------------------------------------------------------------------------------- /man/format_activation_name.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/format_activation_name.Rd -------------------------------------------------------------------------------- /man/getInvCovAR.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/getInvCovAR.Rd -------------------------------------------------------------------------------- /man/get_FORMAT.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/get_FORMAT.Rd -------------------------------------------------------------------------------- /man/groupICA.cifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/groupICA.cifti.Rd -------------------------------------------------------------------------------- /man/halflogdetX.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/halflogdetX.Rd -------------------------------------------------------------------------------- /man/hpf_param.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/hpf_param.Rd -------------------------------------------------------------------------------- /man/lik.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/lik.Rd -------------------------------------------------------------------------------- /man/loglik_kappa_est.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/loglik_kappa_est.Rd -------------------------------------------------------------------------------- /man/make_Pmat.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/make_Pmat.Rd -------------------------------------------------------------------------------- /man/make_mask.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/make_mask.Rd -------------------------------------------------------------------------------- /man/make_mesh.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/make_mesh.Rd -------------------------------------------------------------------------------- /man/make_mesh_2D.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/make_mesh_2D.Rd -------------------------------------------------------------------------------- /man/norm_BOLD.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/norm_BOLD.Rd -------------------------------------------------------------------------------- /man/orthonorm.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/orthonorm.Rd -------------------------------------------------------------------------------- /man/plot.tICA.cifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.tICA.cifti.Rd -------------------------------------------------------------------------------- /man/plot.tICA.matrix.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.tICA.matrix.Rd -------------------------------------------------------------------------------- /man/plot.tICA.nifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.tICA.nifti.Rd -------------------------------------------------------------------------------- /man/plot.tICA_act.cifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.tICA_act.cifti.Rd -------------------------------------------------------------------------------- /man/plot.template.cifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.template.cifti.Rd -------------------------------------------------------------------------------- /man/plot.template.gifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.template.gifti.Rd -------------------------------------------------------------------------------- /man/plot.template.matrix.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.template.matrix.Rd -------------------------------------------------------------------------------- /man/plot.template.nifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/plot.template.nifti.Rd -------------------------------------------------------------------------------- /man/pw_estimate.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/pw_estimate.Rd -------------------------------------------------------------------------------- /man/removebs_template.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/removebs_template.Rd -------------------------------------------------------------------------------- /man/resample_template.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/resample_template.Rd -------------------------------------------------------------------------------- /man/rm_nuisIC.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/rm_nuisIC.Rd -------------------------------------------------------------------------------- /man/scale_Param.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/scale_Param.Rd -------------------------------------------------------------------------------- /man/sqrt_XtX.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/sqrt_XtX.Rd -------------------------------------------------------------------------------- /man/struct_template.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/struct_template.Rd -------------------------------------------------------------------------------- /man/summary.tICA.cifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.tICA.cifti.Rd -------------------------------------------------------------------------------- /man/summary.tICA.matrix.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.tICA.matrix.Rd -------------------------------------------------------------------------------- /man/summary.tICA.nifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.tICA.nifti.Rd -------------------------------------------------------------------------------- /man/summary.tICA_act.cifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.tICA_act.cifti.Rd -------------------------------------------------------------------------------- /man/summary.tICA_act.matrix.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.tICA_act.matrix.Rd -------------------------------------------------------------------------------- /man/summary.tICA_act.nifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.tICA_act.nifti.Rd -------------------------------------------------------------------------------- /man/summary.template.cifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.template.cifti.Rd -------------------------------------------------------------------------------- /man/summary.template.gifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.template.gifti.Rd -------------------------------------------------------------------------------- /man/summary.template.matrix.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.template.matrix.Rd -------------------------------------------------------------------------------- /man/summary.template.nifti.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/summary.template.nifti.Rd -------------------------------------------------------------------------------- /man/templateICA.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/templateICA.Rd -------------------------------------------------------------------------------- /man/update_A.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/update_A.Rd -------------------------------------------------------------------------------- /man/update_A_Chol.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/update_A_Chol.Rd -------------------------------------------------------------------------------- /man/update_S.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/update_S.Rd -------------------------------------------------------------------------------- /man/update_tau2.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/update_tau2.Rd -------------------------------------------------------------------------------- /man/varTol_Param.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/varTol_Param.Rd -------------------------------------------------------------------------------- /man/var_sq_err.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/var_sq_err.Rd -------------------------------------------------------------------------------- /man/var_sq_err_constrained.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/man/var_sq_err_constrained.Rd -------------------------------------------------------------------------------- /templateICAr.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/templateICAr.Rproj -------------------------------------------------------------------------------- /tests/run_templateICAr_tests.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/tests/run_templateICAr_tests.R -------------------------------------------------------------------------------- /tests/run_templateICAr_tests_notInPackage.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/tests/run_templateICAr_tests_notInPackage.R -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/test-misc.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mandymejia/templateICAr/HEAD/tests/testthat/test-misc.R --------------------------------------------------------------------------------