├── .gitignore ├── LICENSE ├── Makefile ├── Pipfile ├── Pipfile.lock ├── README.md ├── analysis ├── __init__.py ├── ami.py ├── citation-network-stats.py ├── plot.py ├── stats.py └── wjaccard.py ├── create-representations ├── Cargo.lock ├── Cargo.toml ├── README.md └── src │ ├── bipartite.rs │ ├── config.rs │ ├── hyperedge_similarity.rs │ ├── hypergraph.rs │ ├── js_similarity.rs │ ├── main.rs │ ├── multilayer.rs │ ├── network.rs │ ├── preprocess.rs │ ├── representation.rs │ └── unipartite.rs ├── data ├── citations.txt ├── example-paper.txt ├── example.txt ├── figure-1.txt ├── hyperedge-names.csv ├── minimal.txt ├── networks-beyond-pairwise-interactions-references.tex ├── paleo-1-77.txt └── references-weighted.txt ├── hypergraph ├── __init__.py ├── __main__.py ├── components.py ├── main.py ├── network │ ├── __init__.py │ ├── hypergraph.py │ ├── network.py │ └── tree.py ├── optimize_weights.py ├── representation │ ├── __init__.py │ ├── bipartite.py │ ├── multilayer.py │ └── unipartite.py └── transition.py ├── notebooks ├── hypergraph.ipynb └── paleo data.ipynb ├── output └── .gitkeep └── references ├── __init__.py ├── __main__.py ├── get_citations.py ├── parse_references.py └── write_hypergraph.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mapequation/mapping-hypergraphs/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mapequation/mapping-hypergraphs/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mapequation/mapping-hypergraphs/HEAD/Makefile -------------------------------------------------------------------------------- /Pipfile: 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