├── .github └── workflows │ └── qc.yml ├── .gitignore ├── CONTRIBUTING.md ├── Makefile ├── README.md ├── mappings ├── hp_doid_pistoia.sssom.tsv ├── ma_uberon_pat_impc.sssom.tsv ├── mp_doid_pistoia.sssom.tsv ├── mp_efo_impc.sssom.tsv ├── mp_hp_eye_impc.sssom.tsv ├── mp_hp_hwt_impc.sssom.tsv ├── mp_hp_mgi_all.sssom.tsv ├── mp_hp_owt_impc.sssom.tsv ├── mp_hp_pat_impc.sssom.tsv ├── mp_hp_pistoia.sssom.tsv ├── mp_hp_xry_impc.sssom.tsv ├── ordo_doid_pistoia.sssom.tsv ├── ordo_mp_pistoia.sssom.tsv └── pato_hp_pat_impc.sssom.tsv ├── mhmi_analysis.ipynb ├── registry.yml ├── scripts ├── lib.py └── update_registry.py ├── sources ├── README.md ├── impc │ ├── IMPC_EYE_003 MP terms 30 Oct 2020.xlsx │ ├── IMPC_HWT_003 MP terms 30 Oct 2020.xlsx │ ├── IMPC_OWT_003 MP terms 30 Oct 2020.xlsx │ ├── IMPC_PAT_003 MA terms 30 Oct 2020.xlsx │ ├── IMPC_PAT_003 MP terms 30 Oct 2020.xlsx │ ├── IMPC_PAT_003 PATO terms 30 Oct 2020.xlsx │ ├── IMPC_XRY_003 MP terms 30 Oct 2020.xlsx │ ├── README.md │ ├── basic_sssom_metadata.yml │ └── sssom │ │ ├── impc_eye_003_mp_terms_30_oct_2020.tsv │ │ ├── impc_hwt_003_mp_terms_30_oct_2020.tsv │ │ ├── impc_owt_003_mp_terms_30_oct_2020.tsv │ │ ├── impc_pat_003_ma_terms_30_oct_2020.tsv │ │ ├── impc_pat_003_mp_terms_30_oct_2020.tsv │ │ ├── impc_pat_003_pato_terms_30_oct_2020.tsv │ │ └── impc_xry_003_mp_terms_30_oct_2020.tsv ├── mgi │ └── mp-ub-em-ma(2017copy).xlsx ├── mmhcdb │ ├── Apr 2017 MMHCdb, DO, and NCIt tumor terms.xlsx │ └── MMHCdb tumor terms to NCI Thesaurus (Jan 2019 updated June 2020).xlsx ├── pistoia │ ├── calculated_output_hp_doid.csv │ ├── calculated_output_hp_doid.rdf │ ├── calculated_output_mp_doid.csv │ ├── calculated_output_mp_doid.rdf │ ├── calculated_output_mp_hp.csv │ ├── calculated_output_mp_hp.rdf │ ├── calculated_output_ordo_doid.csv │ ├── calculated_output_ordo_doid.rdf │ ├── calculated_output_ordo_hp.csv │ ├── calculated_output_ordo_hp.rdf │ ├── calculated_output_ordo_mp.csv │ └── calculated_output_ordo_mp.rdf └── upheno │ 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