├── LICENSE ├── README.md ├── figure-1.png ├── github ├── figure-1.png └── figure-2.png ├── histogpt ├── __init__.py ├── clam │ ├── __init__.py │ ├── create_dataset.py │ ├── create_patches.py │ ├── datasets │ │ ├── __init__.py │ │ └── dataset_h5.py │ ├── extract_features.py │ ├── legacy │ │ ├── __init__.py │ │ ├── create_loader.py │ │ └── create_patches.py │ ├── models │ │ ├── __init__.py │ │ └── resnet_custom.py │ ├── utils │ │ ├── __init__.py │ │ ├── core_utils.py │ │ ├── eval_utils.py │ │ ├── file_utils.py │ │ └── utils.py │ └── wsi_core │ │ ├── WholeSlideImage.py │ │ ├── __init__.py │ │ ├── batch_process_utils.py │ │ ├── util_classes.py │ │ └── wsi_utils.py ├── datasets │ ├── __init__.py │ └── dataset.py ├── helpers │ ├── __init__.py │ ├── inference.py │ ├── patching.py │ └── training.py ├── models │ ├── __init__.py │ ├── ctranspath.py │ ├── flamingo.py │ ├── histogpt.py │ └── transmil.py └── trainers │ ├── __init__.py │ └── pretrain.py ├── setup.py ├── tutorial-1.ipynb └── 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