├── LICENSE ├── README.md ├── bindcraft.py ├── bindcraft.slurm ├── example └── PDL1.pdb ├── functions ├── DAlphaBall.gcc ├── __init__.py ├── biopython_utils.py ├── colabdesign_utils.py ├── dssp ├── generic_utils.py └── pyrosetta_utils.py ├── install_bindcraft.sh ├── notebooks └── BindCraft.ipynb ├── pipeline.png ├── settings_advanced ├── betasheet_4stage_multimer.json ├── betasheet_4stage_multimer_flexible.json ├── betasheet_4stage_multimer_flexible_hardtarget.json ├── betasheet_4stage_multimer_hardtarget.json ├── betasheet_4stage_multimer_mpnn.json ├── betasheet_4stage_multimer_mpnn_flexible.json ├── betasheet_4stage_multimer_mpnn_flexible_hardtarget.json ├── betasheet_4stage_multimer_mpnn_hardtarget.json ├── default_4stage_multimer.json ├── default_4stage_multimer_flexible.json ├── default_4stage_multimer_flexible_hardtarget.json ├── default_4stage_multimer_hardtarget.json ├── default_4stage_multimer_mpnn.json ├── default_4stage_multimer_mpnn_flexible.json ├── 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