├── .gitignore ├── README.md ├── Supplementary Materials.pdf ├── UNI-main ├── .github │ ├── benchmarks.jpg │ ├── joint_logo.jpg │ └── uni.jpg ├── .gitignore ├── LICENSE ├── README.md ├── setup.py └── uni │ ├── __init__.py │ ├── downstream │ ├── __init__.py │ ├── eval_patch_features │ │ ├── __init__.py │ │ ├── fewshot.py │ │ ├── linear_probe.py │ │ ├── logistic_regression.py │ │ ├── metrics.py │ │ └── protonet.py │ ├── extract_patch_features.py │ └── utils.py │ └── get_encoder │ ├── __init__.py │ ├── get_encoder.py │ └── models │ ├── __init__.py │ ├── model_wrappers │ ├── __init__.py │ └── timm_avgpool.py │ └── resnet50_trunc.py ├── Untitled.png ├── figures ├── AdrenalMNIST3D_ACC@1.png ├── BloodMNIST_ACC@1.png ├── BreastMNIST_ACC@1.png ├── DermaMNIST_ACC@1.png ├── PathMNIST_ACC@1.png ├── PneumoniaMNIST_ACC@1.png ├── RetinaMNIST_ACC@1.png └── SynapseMNIST3D_ACC@1.png ├── main_2D_CNN.py ├── main_2D_CNN_memory_safe.py ├── main_2D_CNN_memory_safe_pytorch.py ├── main_2D_foundation.py ├── main_2D_foundation_memory_safe .py ├── main_3D.py ├── main_3D_CNN_pytorch.py ├── metric.py ├── params.py ├── plot.py ├── utils.py └── utils_pytorch.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/masih4/MedImageRetrieval/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/masih4/MedImageRetrieval/HEAD/README.md -------------------------------------------------------------------------------- /Supplementary Materials.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/masih4/MedImageRetrieval/HEAD/Supplementary Materials.pdf -------------------------------------------------------------------------------- /UNI-main/.github/benchmarks.jpg: 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