├── .checkignore ├── .gitattributes ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── feature_request.md │ └── help-wanted.md └── workflows │ ├── ci.yml │ ├── sphinx-build.yml │ └── testing_pr.yml ├── .gitignore ├── .pylintrc ├── .travis.yml ├── CITATION.cff ├── LICENSE.rst ├── README.md ├── code_formatter.sh ├── dockerfiles └── Dockerfile ├── docs ├── Makefile ├── make.bat └── source │ ├── LICENSE.rst │ ├── _static │ └── logo_PyGeM.png │ ├── _tutorials │ ├── pictures │ │ ├── cylinder_mod.png │ │ ├── cylinder_mod_unv_C0.png │ │ ├── cylinder_mod_unv_C1.png │ │ ├── cylinder_orig.png │ │ └── cylinder_orig_unv.png │ ├── tutorial-1-ffd.html │ ├── tutorial-2-iges.html │ ├── tutorial-3-rbf.html │ ├── tutorial-4-idw.html │ ├── tutorial-5-file.html │ ├── tutorial-6-ffd-rbf.html │ └── tutorial-7-cffd.html │ ├── bffd.rst │ ├── cad_deformation.rst │ ├── cffd.rst │ ├── code.rst │ ├── conf.py │ ├── contact.rst │ ├── contributing.rst │ ├── custom_deformation.rst │ ├── custom_deformation_cad.rst │ ├── ffd.rst │ ├── ffdcad.rst │ ├── filehandler.rst │ ├── idw.rst │ ├── idwcad.rst │ ├── index.rst │ ├── openfhandler.rst │ ├── rbf.rst │ ├── rbf_factory.rst │ ├── rbfcad.rst │ ├── stlhandler.rst │ ├── tutorials.rst │ ├── unvhandler.rst │ ├── utils.rst │ ├── vffd.rst │ └── vtkhandler.rst ├── pygem ├── __init__.py ├── bffd.py ├── cad │ ├── __init__.py │ ├── cad_deformation.py │ ├── custom_deformation.py │ ├── ffd.py │ ├── idw.py │ ├── igeshandler.py │ ├── nurbshandler.py │ ├── rbf.py │ └── stephandler.py ├── cffd.py ├── custom_deformation.py ├── deformation.py ├── elmerhandler.py ├── ffd.py ├── filehandler.py ├── idw.py ├── khandler.py ├── mdpahandler.py ├── meta.py ├── openfhandler.py ├── rbf.py ├── rbf_factory.py ├── stlhandler.py ├── unvhandler.py ├── utils.py ├── vffd.py └── vtkhandler.py ├── pyproject.toml ├── readme ├── DTMB_ffd.png ├── bergmann2018zonal.bib ├── demo2018isope.bib ├── demo2018shape.bib ├── demo2019marine.bib ├── drivAer_ffd.png ├── forti2014efficient.bib ├── lombardi2012numerical.bib ├── salmoiraghi2016advances.bib ├── salmoiraghi2018free.bib ├── scafoYZshift.gif ├── sieger2014rbf.bib ├── sieger2015shape.bib ├── tezzele2018combined.bib ├── tezzele2018dimension.bib ├── tezzele2018ecmi.bib ├── tezzele2018model.bib └── tezzele2019marine.bib ├── test.py ├── tests ├── __init__.py ├── test_bffd.py ├── test_cffd.py ├── test_custom_deformation.py ├── test_custom_deformation_cad.py ├── test_datasets │ ├── Stanford_Bunny.stl │ ├── box_modified_test_sphere_true_version5.vtk │ ├── box_modified_test_sphere_true_version6.vtk │ ├── box_test_cube.vtk │ ├── box_test_cube_deformed.vtk │ ├── box_test_sphere.vtk │ ├── box_test_sphere_deformed.vtk │ ├── box_test_sphere_true_version5.vtk │ ├── box_test_sphere_true_version6.vtk │ ├── meshpoints_cube_mod_rbf.npy │ ├── meshpoints_sphere_mod.npy │ ├── meshpoints_sphere_orig.npy │ ├── parameters_default.prm │ ├── parameters_idw_cube.prm │ ├── parameters_idw_default.prm │ ├── parameters_idw_deform.prm │ ├── parameters_rbf_bugged_01.prm │ ├── parameters_rbf_bugged_02.prm │ ├── parameters_rbf_cube.prm │ ├── parameters_rbf_cube_out_true.prm │ ├── parameters_rbf_default.prm │ ├── parameters_rbf_extra.prm │ ├── parameters_rbf_radius.prm │ ├── parameters_sphere.prm │ ├── parameters_sphere_out_true.prm │ ├── parameters_test_cffd.prm │ ├── parameters_test_ffd_identity.prm │ ├── parameters_test_ffd_iges.prm │ ├── parameters_test_ffd_pipe_unv_C0.prm │ ├── parameters_test_ffd_pipe_unv_C1.prm │ ├── parameters_test_ffd_sphere.prm │ ├── parameters_test_openFOAM.prm │ ├── points_test_true_version6.vtp │ ├── test_cffd.prm │ ├── test_elmer.nodes │ ├── test_elmer_out_true.nodes │ ├── test_openFOAM │ ├── test_openFOAM_out_true │ ├── test_pipe.iges │ ├── test_pipe.igs │ ├── test_pipe.k │ ├── test_pipe.mdpa │ ├── test_pipe.step │ ├── test_pipe.stp │ ├── test_pipe.unv │ ├── test_pipe_hollow.iges │ ├── test_pipe_hollow_out_true.iges │ ├── test_pipe_out_true.iges │ ├── test_pipe_out_true.igs │ ├── test_pipe_out_true.step │ ├── test_pipe_out_true.stp │ ├── test_red_blood_cell.vtk │ ├── test_red_blood_cell_out_true.vtk │ ├── test_sphere.stl │ ├── test_sphere_bin.stl │ ├── test_sphere_cffd.npy │ ├── test_sphere_cffd.stl │ ├── test_sphere_out_true.stl │ ├── test_square.k │ ├── test_square.mdpa │ ├── test_square.unv │ ├── test_square_comma.k │ ├── test_square_comma_out_true.k │ ├── test_square_out.mdpa │ ├── test_square_out_true.k │ ├── test_square_out_true.mdpa │ ├── test_square_out_true.unv │ └── weights_rbf_cube.npy ├── test_elmerhandler.py ├── test_ffd.py ├── test_ffdcad.py ├── test_filehandler.py ├── test_idw.py ├── test_igeshandler.py.disabled ├── test_khandler.py ├── test_mdpahandler.py ├── test_nurbshandler.py.disabled ├── test_openfhandler.py ├── test_package.py.disabled ├── test_rbf.py ├── test_rbf_factory.py ├── test_stephandler.py.disabled ├── test_unvhandler.py ├── test_utils.py ├── test_vffd.py └── test_vtkhandler.py └── tutorials ├── README.md ├── pictures ├── cylinder_mod.png ├── cylinder_mod_unv_C0.png ├── cylinder_mod_unv_C1.png ├── cylinder_orig.png └── cylinder_orig_unv.png ├── tutorial-3-unv.ipynb ├── tutorial-6-k.ipynb ├── tutorial-6-k.py ├── tutorial-7-mdpa.ipynb ├── tutorial-7-mdpa.py ├── tutorial1 ├── tutorial-1-ffd.ipynb └── tutorial-1-ffd.py ├── tutorial2 ├── tutorial-2-iges.ipynb └── tutorial-2-iges.py ├── tutorial3 ├── tutorial-3-rbf.ipynb └── tutorial-3-rbf.py ├── tutorial4 ├── tutorial-4-idw.ipynb └── tutorial-4-idw.py ├── tutorial5 ├── tutorial-5-file.ipynb └── tutorial-5-file.py ├── tutorial6 ├── openfoam_mesh │ └── constant │ │ ├── polyMesh │ │ ├── boundary │ │ ├── faces │ │ ├── neighbour │ │ ├── owner │ │ └── points │ │ ├── transportProperties │ │ └── turbulenceProperties ├── tutorial-6-ffd-rbf.ipynb ├── tutorial-6-ffd-rbf.py └── unusable_original_mesh.png └── tutorial7 ├── tutorial-7-cffd.ipynb └── tutorial-7-cffd.py /.checkignore: 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