├── .DS_Store ├── .gitignore ├── Aux code ├── develop_Tmin_optimizer.R ├── issues.R └── sandbox_delete.R ├── EValue ├── .DS_Store ├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── EValue.Rproj ├── NAMESPACE ├── R │ ├── .DS_Store │ ├── .Rapp.history │ ├── EValue.R │ ├── EValue_selection.R │ ├── biases.R │ ├── effect_measures.R │ ├── effect_modification.R │ ├── meta-analysis.R │ ├── multi_bound.R │ ├── multi_evalue.R │ └── utils.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── data │ ├── .DS_Store │ ├── .Rapp.history │ ├── lead.RData │ ├── soyMeta.RData │ └── toyMeta.RData ├── docs │ ├── .DS_Store │ ├── 404.html │ ├── articles │ │ ├── index.html │ │ ├── meta-analysis.html │ │ ├── multiple-bias-examples.html │ │ ├── multiple-bias.html │ │ ├── multiple-bias_files │ │ │ └── figure-html │ │ │ │ └── unnamed-chunk-9-1.png │ │ ├── selection-bias.html │ │ ├── unmeasured-confounding.html │ │ └── unmeasured-confounding_files │ │ │ └── figure-html │ │ │ ├── unnamed-chunk-3-1.png │ │ │ ├── unnamed-chunk-4-1.png │ │ │ └── unnamed-chunk-7-1.png │ ├── authors.html │ ├── bootstrap-toc.css │ ├── bootstrap-toc.js │ ├── docsearch.css │ ├── docsearch.js │ ├── extra.css │ ├── extra.html │ ├── extra.js │ ├── index.html │ ├── link.svg │ ├── pkgdown.css │ ├── pkgdown.js │ ├── pkgdown.yml │ └── reference │ │ ├── bf_func.html │ │ ├── bias_plot-1.png │ │ ├── bias_plot.html │ │ ├── calculate_bound.html │ │ ├── calculate_evalue.html │ │ ├── combine_words.html │ │ ├── confounded_meta.html │ │ ├── confounding.html │ │ ├── convert_measures.html │ │ ├── deg_func.html │ │ ├── effect_measures.html │ │ ├── evalue.html │ │ ├── evalues.HR.html │ │ ├── evalues.MD.html │ │ ├── evalues.OLS.html │ │ ├── evalues.OR.html │ │ ├── evalues.RD.html │ │ ├── evalues.RR.html │ │ ├── figures │ │ └── README-pressure-1.png │ │ ├── get_arg_tab.html │ │ ├── get_param_info.html │ │ ├── index.html │ │ ├── lead.html │ │ ├── misclassification.html │ │ ├── multi_bias.html │ │ ├── multi_bound.html │ │ ├── multi_evalue.html │ │ ├── raw_string.html │ │ ├── scrape_meta.html │ │ ├── selection.html │ │ ├── selection_evalue.html │ │ ├── sens_plot-1.png │ │ ├── sens_plot-2.png │ │ ├── sens_plot-3.png │ │ ├── sens_plot.html │ │ ├── sens_table.html │ │ ├── stronger_than.html │ │ ├── svalues.HR.html │ │ ├── svalues.OR.html │ │ ├── svalues.RR.html │ │ ├── threshold.html │ │ ├── threshold_selection.html │ │ ├── twoXtwoRR.html │ │ └── wrapmessage.html ├── inst │ └── CITATION ├── man │ ├── .DS_Store │ ├── bf_func.Rd │ ├── bias_plot.Rd │ ├── confounded_meta.Rd │ ├── confounding.Rd │ ├── convert_measures.Rd │ ├── deg_func.Rd │ ├── effect_measures.Rd │ ├── evalue.Rd │ ├── evalues.HR.Rd │ ├── evalues.IC.Rd │ ├── evalues.MD.Rd │ ├── evalues.OLS.Rd │ ├── evalues.OR.Rd │ ├── evalues.RD.Rd │ ├── evalues.RR.Rd │ ├── figures │ │ └── README-pressure-1.png │ ├── lead.Rd │ ├── misclassification.Rd │ ├── multi_bias.Rd │ ├── multi_bound.Rd │ ├── multi_evalue.Rd │ ├── selection.Rd │ ├── selection_evalue.Rd │ ├── sens_plot.Rd │ ├── soyMeta.Rd │ ├── svalues.HR.Rd │ ├── svalues.OR.Rd │ ├── svalues.RR.Rd │ ├── threshold.Rd │ ├── threshold_selection.Rd │ ├── toyMeta.Rd │ └── twoXtwoRR.Rd ├── pkgdown │ └── extra.css ├── tests │ ├── helper_testthat.R │ └── testthat │ │ ├── .Rapp.history │ │ ├── test-effect-mod.R │ │ ├── test-multiple_biases.R │ │ └── testthat.R └── vignettes │ ├── .gitignore │ ├── meta-analysis.Rmd │ ├── multiple-bias-examples.Rmd │ ├── multiple-bias.Rmd │ ├── selection-bias.Rmd │ └── unmeasured-confounding.Rmd ├── README.Rmd ├── README.html ├── README.md ├── docs ├── 404.html ├── articles │ ├── index.html │ ├── meta-analysis.html │ ├── multiple-bias-examples.html │ ├── multiple-bias.html │ ├── multiple-bias_files │ │ └── figure-html │ │ │ └── unnamed-chunk-9-1.png │ ├── selection-bias.html │ ├── unmeasured-confounding.html │ └── unmeasured-confounding_files │ │ └── figure-html │ │ ├── unnamed-chunk-3-1.png │ │ ├── unnamed-chunk-4-1.png │ │ └── unnamed-chunk-7-1.png ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── extra.css ├── extra.html ├── extra.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── bf_func.html │ ├── bias_plot-1.png │ ├── bias_plot.html │ ├── calculate_bound.html │ ├── calculate_evalue.html │ ├── combine_words.html │ ├── confounded_meta.html │ ├── confounding.html │ ├── convert_measures.html │ ├── deg_func.html │ ├── effect_measures.html │ ├── evalue.html │ ├── evalues.HR.html │ ├── evalues.MD.html │ ├── evalues.OLS.html │ ├── evalues.OR.html │ ├── evalues.RD.html │ ├── evalues.RR.html │ ├── figures │ └── README-pressure-1.png │ ├── get_arg_tab.html │ ├── get_param_info.html │ ├── index.html │ ├── lead.html │ ├── misclassification.html │ ├── multi_bias.html │ ├── multi_bound.html │ ├── multi_evalue.html │ ├── raw_string.html │ ├── scrape_meta.html │ ├── selection.html │ ├── selection_evalue.html │ ├── sens_plot-1.png │ ├── sens_plot-2.png │ ├── 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