├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── circleGraphLayout.R ├── circleProgressiveLayout.R ├── circleRemoveOverlaps.R ├── circleRepelLayout.R ├── circleVertices.R ├── data.R └── packcircles.R ├── README.md ├── cran-comments.md ├── data-raw ├── input2.txt └── progressive_example_data.R ├── data └── bacteria.rda ├── man ├── bacteria.Rd ├── circleGraphLayout.Rd ├── circleLayout.Rd ├── circleLayoutVertices.Rd ├── circlePlotData.Rd ├── circleProgressiveLayout.Rd ├── circleRemoveOverlaps.Rd ├── circleRepelLayout.Rd ├── circleVertices.Rd └── packcircles-package.Rd ├── packcircles.Rproj ├── src ├── RcppExports.cpp ├── init.c ├── packcircles.cpp ├── pads_circle_pack.cpp ├── pmenzel_circle_pack.cpp └── select_non_overlapping.cpp └── vignettes ├── graph_example.png ├── graph_packing.Rmd ├── intro.Rmd └── progressive_packing.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/LICENSE -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/RcppExports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/RcppExports.R -------------------------------------------------------------------------------- /R/circleGraphLayout.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/circleGraphLayout.R -------------------------------------------------------------------------------- /R/circleProgressiveLayout.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/circleProgressiveLayout.R -------------------------------------------------------------------------------- /R/circleRemoveOverlaps.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/circleRemoveOverlaps.R -------------------------------------------------------------------------------- /R/circleRepelLayout.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/circleRepelLayout.R -------------------------------------------------------------------------------- /R/circleVertices.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/circleVertices.R -------------------------------------------------------------------------------- /R/data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/data.R -------------------------------------------------------------------------------- /R/packcircles.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/R/packcircles.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/README.md -------------------------------------------------------------------------------- /cran-comments.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/cran-comments.md -------------------------------------------------------------------------------- /data-raw/input2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/data-raw/input2.txt -------------------------------------------------------------------------------- /data-raw/progressive_example_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/data-raw/progressive_example_data.R -------------------------------------------------------------------------------- /data/bacteria.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/data/bacteria.rda -------------------------------------------------------------------------------- /man/bacteria.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/bacteria.Rd -------------------------------------------------------------------------------- /man/circleGraphLayout.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circleGraphLayout.Rd -------------------------------------------------------------------------------- /man/circleLayout.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circleLayout.Rd -------------------------------------------------------------------------------- /man/circleLayoutVertices.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circleLayoutVertices.Rd -------------------------------------------------------------------------------- /man/circlePlotData.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circlePlotData.Rd -------------------------------------------------------------------------------- /man/circleProgressiveLayout.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circleProgressiveLayout.Rd -------------------------------------------------------------------------------- /man/circleRemoveOverlaps.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circleRemoveOverlaps.Rd -------------------------------------------------------------------------------- /man/circleRepelLayout.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circleRepelLayout.Rd -------------------------------------------------------------------------------- /man/circleVertices.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/circleVertices.Rd -------------------------------------------------------------------------------- /man/packcircles-package.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/man/packcircles-package.Rd -------------------------------------------------------------------------------- /packcircles.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/packcircles.Rproj -------------------------------------------------------------------------------- /src/RcppExports.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/src/RcppExports.cpp -------------------------------------------------------------------------------- /src/init.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/src/init.c -------------------------------------------------------------------------------- /src/packcircles.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/src/packcircles.cpp -------------------------------------------------------------------------------- /src/pads_circle_pack.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/src/pads_circle_pack.cpp -------------------------------------------------------------------------------- /src/pmenzel_circle_pack.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/src/pmenzel_circle_pack.cpp -------------------------------------------------------------------------------- /src/select_non_overlapping.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/src/select_non_overlapping.cpp -------------------------------------------------------------------------------- /vignettes/graph_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/vignettes/graph_example.png -------------------------------------------------------------------------------- /vignettes/graph_packing.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/vignettes/graph_packing.Rmd -------------------------------------------------------------------------------- /vignettes/intro.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/vignettes/intro.Rmd -------------------------------------------------------------------------------- /vignettes/progressive_packing.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mbedward/packcircles/HEAD/vignettes/progressive_packing.Rmd --------------------------------------------------------------------------------