├── .cproject ├── .externalToolBuilders ├── .gitignore ├── make.launch └── org.python.pydev.PyDevBuilder.launch ├── .gitignore ├── .project ├── .pydevproject ├── .settings ├── org.eclipse.cdt.codan.core.prefs ├── org.eclipse.cdt.core.prefs ├── org.eclipse.cdt.ui.prefs └── org.eclipse.core.resources.prefs ├── .travis.yml ├── CHANGELOG.txt ├── CMakeLists.txt ├── Doxyfile ├── LICENSE.txt ├── README.md ├── appveyor.yml ├── appveyor_windows ├── config.h ├── debug_version.h ├── mdllex.c ├── mdlparse.c ├── mdlparse.h └── version.h ├── docs ├── code_notes.txt ├── coding_style.txt ├── doxygen │ ├── Doxyfile │ └── mcell_logo.gif ├── dynamic_geometry.md ├── grid_util.lyx ├── grid_util.pdf ├── grid_util_bary.eps ├── grid_util_bary.fig ├── lr_bar_2D.pdf ├── lr_bar_2D.tex ├── mcell_output_log_control.txt ├── mem_util.lyx ├── mem_util.pdf ├── policy_mol_wall_interaction.odt ├── policy_surf_products_placement.doc ├── rdl.0.2.0.pdf ├── reaction_overview │ ├── Table_1.pdf │ ├── Table_2.pdf │ ├── Table_3.pdf │ ├── Table_4.pdf │ ├── Table_5.pdf │ ├── fig1.png │ ├── fig2.png │ ├── fig3.png │ ├── fig4.png │ ├── fig5.png │ └── reaction_overview.pdf ├── suggested_3way_rxn.lyx └── suggested_3way_rxn.pdf ├── include ├── datamodel_defines.h ├── debug.h ├── debug_config.h └── dump_state.h ├── libmcell ├── .gitignore ├── CMakeLists.txt ├── api │ ├── api_common.h │ ├── api_config.h │ ├── api_utils.cpp │ ├── api_utils.h │ ├── base_chkpt_mol.h │ ├── base_data_class.h │ ├── base_export_class.h │ ├── base_introspection_class.h │ ├── bindings.cpp │ ├── bindings.h │ ├── bng_converter.cpp │ ├── bng_converter.h │ ├── bngl_utils.cpp │ ├── callbacks.cpp │ ├── callbacks.h │ ├── checkpoint_signals.cpp │ ├── checkpoint_signals.h │ ├── chkpt_surf_mol.cpp │ ├── chkpt_surf_mol.h │ ├── chkpt_vol_mol.cpp │ ├── chkpt_vol_mol.h │ ├── color.cpp │ ├── color.h │ ├── compartment_utils.cpp │ ├── compartment_utils.h │ ├── complex.cpp │ ├── complex.h │ ├── component.cpp │ ├── component.h │ ├── component_type.cpp │ ├── component_type.h │ ├── count.cpp │ ├── count.h │ ├── count_term.h │ ├── data_utils.cpp │ ├── elementary_molecule.cpp │ ├── elementary_molecule.h │ ├── elementary_molecule_type.cpp │ ├── elementary_molecule_type.h │ ├── exports.cpp │ ├── geometry_object.cpp │ ├── geometry_object.h │ ├── geometry_utils.cpp │ ├── globals.cpp │ ├── globals.h │ ├── initial_surface_release.h │ ├── instantiation.cpp │ ├── instantiation.h │ ├── introspection.cpp │ ├── introspection.h │ ├── libmcell_dummy.cpp │ ├── mcell.h │ ├── mcell4_converter.cpp │ ├── mcell4_converter.h │ ├── model.cpp │ ├── model.h │ ├── mol_wall_hit_info.h │ ├── molecule.cpp │ ├── molecule.h │ ├── molecule_release_info.h │ ├── notifications.h │ ├── observables.cpp │ ├── observables.h │ ├── pybind11_stl_include.h │ ├── python_export_constants.cpp │ ├── python_export_constants.h │ ├── python_export_utils.cpp │ ├── python_export_utils.h │ ├── python_exporter.cpp │ ├── python_exporter.h │ ├── reaction_info.h │ ├── reaction_rule.cpp │ ├── reaction_rule.h │ ├── region.h │ ├── release_pattern.h │ ├── release_site.h │ ├── rng_state.cpp │ ├── rng_state.h │ ├── run_utils.cpp │ ├── shared_structs.h │ ├── species.cpp │ ├── species.h │ ├── subsystem.cpp │ ├── subsystem.h │ ├── surface_class.cpp │ ├── surface_class.h │ ├── surface_property.h │ ├── surface_region.h │ ├── viz_output.h │ ├── wall.cpp │ ├── wall.h │ ├── wall_wall_hit_info.h │ └── warnings.h ├── definition │ ├── callbacks.yaml │ ├── checkpointing.yaml │ ├── constants.py │ ├── constants.yaml │ ├── doc.py │ ├── gen.py │ ├── geometry.yaml │ ├── instantiation.yaml │ ├── introspection.yaml │ ├── model.yaml │ ├── observables.yaml │ ├── simulation_setup.yaml │ ├── submodules.yaml │ └── subsystem.yaml ├── documentation │ ├── api_overview.rst │ ├── bngl.rst │ ├── build.sh │ ├── conf.py │ ├── examples │ │ └── examples.rst │ ├── features │ │ ├── dynamic_geometry.rst │ │ └── features.rst │ ├── file_formats.rst │ ├── generated │ │ ├── api.rst │ │ ├── callbacks.rst │ │ ├── checkpointing.rst │ │ ├── constants.rst │ │ ├── geometry.rst │ │ ├── instantiation.rst │ │ ├── introspection.rst │ │ ├── model.rst │ │ ├── observables.rst │ │ ├── simulation_setup.rst │ │ ├── submodules.rst │ │ └── subsystem.rst │ ├── images │ │ ├── bngl_compartments.png │ │ ├── bngl_rule.png │ │ ├── bngl_rule_application.png │ │ ├── installation_macos_security_and_privacy.png │ │ ├── installation_macos_security_and_privacy_selected.png │ │ ├── installation_macos_start_blender.png │ │ ├── installation_macos_start_terminal.png │ │ ├── installation_macos_warning1.png │ │ ├── installation_macos_warning2.png │ │ ├── installation_macos_warning3.png │ │ ├── installation_macos_warning4.png │ │ ├── installation_win_redist.png │ │ ├── plugin_cellblender_enable.png │ │ ├── troubleshooting_cannot_initialize_cellblender.png │ │ └── tutorial_result.png │ ├── index.rst │ ├── installation.rst │ ├── model_conversions.rst │ ├── prerequisites.txt │ ├── sim_env_overview.rst │ ├── templates │ │ └── layout.html │ └── tutorial │ │ └── tutorial.rst ├── generated │ ├── .gitignore │ ├── gen_base_chkpt_mol.cpp │ ├── gen_base_chkpt_mol.h │ ├── gen_bngl_utils.cpp │ ├── gen_bngl_utils.h │ ├── gen_chkpt_surf_mol.cpp │ ├── gen_chkpt_surf_mol.h │ ├── gen_chkpt_vol_mol.cpp │ ├── gen_chkpt_vol_mol.h │ ├── gen_color.cpp │ ├── gen_color.h │ ├── gen_complex.cpp │ ├── gen_complex.h │ ├── gen_component.cpp │ ├── gen_component.h │ ├── gen_component_type.cpp │ ├── gen_component_type.h │ ├── gen_config.cpp │ ├── gen_config.h │ ├── gen_constants.cpp │ ├── gen_constants.h │ ├── gen_count.cpp │ ├── gen_count.h │ ├── gen_count_term.cpp │ ├── gen_count_term.h │ ├── gen_data_utils.cpp │ ├── gen_data_utils.h │ ├── gen_elementary_molecule.cpp │ ├── gen_elementary_molecule.h │ ├── gen_elementary_molecule_type.cpp │ ├── gen_elementary_molecule_type.h │ ├── gen_geometry_object.cpp │ ├── gen_geometry_object.h │ ├── gen_geometry_utils.cpp │ ├── gen_geometry_utils.h │ ├── gen_initial_surface_release.cpp │ ├── gen_initial_surface_release.h │ ├── gen_instantiation.cpp │ ├── gen_instantiation.h │ ├── gen_introspection.cpp │ ├── gen_introspection.h │ ├── gen_model.cpp │ ├── gen_model.h │ ├── gen_mol_wall_hit_info.cpp │ ├── gen_mol_wall_hit_info.h │ ├── gen_molecule.cpp │ ├── gen_molecule.h │ ├── gen_molecule_release_info.cpp │ ├── gen_molecule_release_info.h │ ├── gen_names.h │ ├── gen_notifications.cpp │ ├── gen_notifications.h │ ├── gen_observables.cpp │ ├── gen_observables.h │ ├── gen_reaction_info.cpp │ ├── gen_reaction_info.h │ ├── gen_reaction_rule.cpp │ ├── gen_reaction_rule.h │ ├── gen_region.cpp │ ├── gen_region.h │ ├── gen_release_pattern.cpp │ ├── gen_release_pattern.h │ ├── gen_release_site.cpp │ ├── gen_release_site.h │ ├── gen_rng_state.cpp │ ├── gen_rng_state.h │ ├── gen_run_utils.cpp │ ├── gen_run_utils.h │ ├── gen_species.cpp │ ├── gen_species.h │ ├── gen_subsystem.cpp │ ├── gen_subsystem.h │ ├── gen_surface_class.cpp │ ├── gen_surface_class.h │ ├── gen_surface_property.cpp │ ├── gen_surface_property.h │ ├── gen_surface_region.cpp │ ├── gen_surface_region.h │ ├── gen_vectors_bind.cpp │ ├── gen_vectors_make_opaque.h │ ├── gen_viz_output.cpp │ ├── gen_viz_output.h │ ├── gen_wall.cpp │ ├── gen_wall.h │ ├── gen_wall_wall_hit_info.cpp │ ├── gen_wall_wall_hit_info.h │ ├── gen_warnings.cpp │ ├── gen_warnings.h │ └── mcell.pyi └── replace_in_all_files.sh ├── libs ├── cpptime │ ├── LICENSE │ ├── MCELL_INFO.txt │ ├── README.md │ ├── cpptime.h │ └── tests │ │ ├── catch.hpp │ │ ├── mem_test.cpp │ │ └── timer_test.cpp ├── glm │ ├── CMakeLists.txt │ ├── common.hpp │ ├── detail │ │ ├── _features.hpp │ │ ├── _fixes.hpp │ │ ├── _noise.hpp │ │ ├── _swizzle.hpp │ │ ├── _swizzle_func.hpp │ │ ├── _vectorize.hpp │ │ ├── compute_common.hpp │ │ ├── compute_vector_relational.hpp │ │ ├── func_common.inl │ │ ├── func_common_simd.inl │ │ ├── func_exponential.inl │ │ ├── func_exponential_simd.inl │ │ ├── func_geometric.inl │ │ ├── func_geometric_simd.inl │ │ ├── func_integer.inl │ │ ├── func_integer_simd.inl │ │ ├── func_matrix.inl │ │ ├── func_matrix_simd.inl │ │ ├── func_packing.inl │ │ ├── func_packing_simd.inl │ │ ├── func_trigonometric.inl │ │ ├── func_trigonometric_simd.inl │ │ ├── func_vector_relational.inl │ │ ├── func_vector_relational_simd.inl │ │ ├── glm.cpp │ │ ├── qualifier.hpp │ │ ├── setup.hpp │ │ ├── type_float.hpp │ │ ├── type_half.hpp │ │ ├── type_half.inl │ │ ├── type_mat2x2.hpp │ │ ├── type_mat2x2.inl │ │ ├── type_mat2x3.hpp │ │ ├── type_mat2x3.inl │ │ ├── type_mat2x4.hpp │ │ ├── type_mat2x4.inl │ │ ├── type_mat3x2.hpp │ │ ├── type_mat3x2.inl │ │ ├── type_mat3x3.hpp │ │ ├── type_mat3x3.inl │ │ ├── type_mat3x4.hpp │ │ ├── type_mat3x4.inl │ │ ├── type_mat4x2.hpp │ │ ├── type_mat4x2.inl │ │ ├── type_mat4x3.hpp │ │ ├── type_mat4x3.inl │ │ ├── type_mat4x4.hpp │ │ ├── type_mat4x4.inl │ │ ├── type_mat4x4_simd.inl │ │ ├── type_quat.hpp │ │ ├── type_quat.inl │ │ ├── type_quat_simd.inl │ │ ├── type_vec1.hpp │ │ ├── type_vec1.inl │ │ ├── type_vec2.hpp │ │ ├── type_vec2.inl │ │ ├── type_vec3.hpp │ │ ├── type_vec3.inl │ │ ├── type_vec4.hpp │ │ ├── type_vec4.inl │ │ └── type_vec4_simd.inl │ ├── exponential.hpp │ ├── ext.hpp │ ├── ext │ │ ├── matrix_clip_space.hpp │ │ ├── matrix_clip_space.inl │ │ ├── matrix_double2x2.hpp │ │ ├── matrix_double2x2_precision.hpp │ │ ├── matrix_double2x3.hpp │ │ ├── matrix_double2x3_precision.hpp │ │ ├── matrix_double2x4.hpp │ │ ├── matrix_double2x4_precision.hpp │ │ ├── matrix_double3x2.hpp │ │ ├── matrix_double3x2_precision.hpp │ │ ├── matrix_double3x3.hpp │ │ ├── matrix_double3x3_precision.hpp │ │ ├── matrix_double3x4.hpp │ │ ├── matrix_double3x4_precision.hpp │ │ ├── matrix_double4x2.hpp │ │ ├── matrix_double4x2_precision.hpp │ │ ├── matrix_double4x3.hpp │ │ ├── matrix_double4x3_precision.hpp │ │ ├── matrix_double4x4.hpp │ │ ├── matrix_double4x4_precision.hpp │ │ ├── matrix_float2x2.hpp │ │ ├── matrix_float2x2_precision.hpp │ │ ├── matrix_float2x3.hpp │ │ ├── matrix_float2x3_precision.hpp │ │ ├── matrix_float2x4.hpp │ │ ├── matrix_float2x4_precision.hpp │ │ ├── matrix_float3x2.hpp │ │ ├── matrix_float3x2_precision.hpp │ │ ├── matrix_float3x3.hpp │ │ ├── matrix_float3x3_precision.hpp │ │ ├── matrix_float3x4.hpp │ │ ├── matrix_float3x4_precision.hpp │ │ ├── matrix_float4x2.hpp │ │ ├── matrix_float4x2_precision.hpp │ │ ├── matrix_float4x3.hpp │ │ ├── matrix_float4x3_precision.hpp │ │ ├── matrix_float4x4.hpp │ │ ├── matrix_float4x4_precision.hpp │ │ ├── matrix_projection.hpp │ │ ├── matrix_projection.inl │ │ ├── matrix_relational.hpp │ │ ├── matrix_relational.inl │ │ ├── matrix_transform.hpp │ │ ├── matrix_transform.inl │ │ ├── quaternion_common.hpp │ │ ├── quaternion_common.inl │ │ ├── quaternion_common_simd.inl │ │ ├── quaternion_double.hpp │ │ ├── quaternion_double_precision.hpp │ │ ├── quaternion_exponential.hpp │ │ ├── quaternion_exponential.inl │ │ ├── quaternion_float.hpp │ │ ├── quaternion_float_precision.hpp │ │ ├── quaternion_geometric.hpp │ │ ├── quaternion_geometric.inl │ │ ├── quaternion_relational.hpp │ │ ├── quaternion_relational.inl │ │ ├── quaternion_transform.hpp │ │ ├── quaternion_transform.inl │ │ ├── quaternion_trigonometric.hpp │ │ ├── quaternion_trigonometric.inl │ │ ├── scalar_common.hpp │ │ ├── scalar_common.inl │ │ ├── scalar_constants.hpp │ │ ├── scalar_constants.inl │ │ ├── scalar_int_sized.hpp │ │ ├── scalar_relational.hpp │ │ ├── scalar_relational.inl │ │ ├── scalar_uint_sized.hpp │ │ ├── scalar_ulp.hpp │ │ ├── scalar_ulp.inl │ │ ├── vector_bool1.hpp │ │ ├── vector_bool1_precision.hpp │ │ ├── vector_bool2.hpp │ │ ├── vector_bool2_precision.hpp │ │ ├── vector_bool3.hpp │ │ ├── vector_bool3_precision.hpp │ │ ├── vector_bool4.hpp │ │ ├── vector_bool4_precision.hpp │ │ ├── vector_common.hpp │ │ ├── vector_common.inl │ │ ├── vector_double1.hpp │ │ ├── vector_double1_precision.hpp │ │ ├── vector_double2.hpp │ │ ├── vector_double2_precision.hpp │ │ ├── vector_double3.hpp │ │ ├── vector_double3_precision.hpp │ │ ├── vector_double4.hpp │ │ ├── vector_double4_precision.hpp │ │ ├── vector_float1.hpp │ │ ├── vector_float1_precision.hpp │ │ ├── vector_float2.hpp │ │ ├── vector_float2_precision.hpp │ │ ├── vector_float3.hpp │ │ ├── vector_float3_precision.hpp │ │ ├── vector_float4.hpp │ │ ├── vector_float4_precision.hpp │ │ ├── vector_int1.hpp │ │ ├── vector_int1_precision.hpp │ │ ├── vector_int2.hpp │ │ ├── vector_int2_precision.hpp │ │ ├── vector_int3.hpp │ │ ├── vector_int3_precision.hpp │ │ ├── vector_int4.hpp │ │ ├── vector_int4_precision.hpp │ │ ├── vector_relational.hpp │ │ ├── vector_relational.inl │ │ ├── vector_uint1.hpp │ │ ├── vector_uint1_precision.hpp │ │ ├── vector_uint2.hpp │ │ ├── vector_uint2_precision.hpp │ │ ├── vector_uint3.hpp │ │ ├── vector_uint3_precision.hpp │ │ ├── vector_uint4.hpp │ │ ├── vector_uint4_precision.hpp │ │ ├── vector_ulp.hpp │ │ └── vector_ulp.inl │ ├── fwd.hpp │ ├── geometric.hpp │ ├── glm.hpp │ ├── gtc │ │ ├── bitfield.hpp │ │ ├── bitfield.inl │ │ ├── color_space.hpp │ │ ├── color_space.inl │ │ ├── constants.hpp │ │ ├── constants.inl │ │ ├── epsilon.hpp │ │ ├── epsilon.inl │ │ ├── integer.hpp │ │ ├── integer.inl │ │ ├── matrix_access.hpp │ │ ├── matrix_access.inl │ │ ├── matrix_integer.hpp │ │ ├── matrix_inverse.hpp │ │ ├── matrix_inverse.inl │ │ ├── matrix_transform.hpp │ │ ├── matrix_transform.inl │ │ ├── noise.hpp │ │ ├── noise.inl │ │ ├── packing.hpp │ │ ├── packing.inl │ │ ├── quaternion.hpp │ │ ├── quaternion.inl │ │ ├── quaternion_simd.inl │ │ ├── random.hpp │ │ ├── random.inl │ │ ├── reciprocal.hpp │ │ ├── reciprocal.inl │ │ ├── round.hpp │ │ ├── round.inl │ │ ├── type_aligned.hpp │ │ ├── type_precision.hpp │ │ ├── type_precision.inl │ │ ├── type_ptr.hpp │ │ ├── type_ptr.inl │ │ ├── ulp.hpp │ │ ├── ulp.inl │ │ └── vec1.hpp │ ├── gtx │ │ ├── associated_min_max.hpp │ │ ├── associated_min_max.inl │ │ ├── bit.hpp │ │ ├── bit.inl │ │ ├── closest_point.hpp │ │ ├── closest_point.inl │ │ ├── color_encoding.hpp │ │ ├── color_encoding.inl │ │ ├── color_space.hpp │ │ ├── color_space.inl │ │ ├── color_space_YCoCg.hpp │ │ ├── color_space_YCoCg.inl │ │ ├── common.hpp │ │ ├── common.inl │ │ ├── compatibility.hpp │ │ ├── compatibility.inl │ │ ├── component_wise.hpp │ │ ├── component_wise.inl │ │ ├── dual_quaternion.hpp │ │ ├── dual_quaternion.inl │ │ ├── easing.hpp │ │ ├── easing.inl │ │ ├── euler_angles.hpp │ │ ├── euler_angles.inl │ │ ├── extend.hpp │ │ ├── extend.inl │ │ ├── extended_min_max.hpp │ │ ├── extended_min_max.inl │ │ ├── exterior_product.hpp │ │ ├── exterior_product.inl │ │ ├── fast_exponential.hpp │ │ ├── fast_exponential.inl │ │ ├── fast_square_root.hpp │ │ ├── fast_square_root.inl │ │ ├── fast_trigonometry.hpp │ │ ├── fast_trigonometry.inl │ │ ├── float_notmalize.inl │ │ ├── functions.hpp │ │ ├── functions.inl │ │ ├── gradient_paint.hpp │ │ ├── gradient_paint.inl │ │ ├── handed_coordinate_space.hpp │ │ ├── handed_coordinate_space.inl │ │ ├── hash.hpp │ │ ├── hash.inl │ │ ├── integer.hpp │ │ ├── integer.inl │ │ ├── intersect.hpp │ │ ├── intersect.inl │ │ ├── io.hpp │ │ ├── io.inl │ │ ├── log_base.hpp │ │ ├── log_base.inl │ │ ├── matrix_cross_product.hpp │ │ ├── matrix_cross_product.inl │ │ ├── matrix_decompose.hpp │ │ ├── matrix_decompose.inl │ │ ├── matrix_factorisation.hpp │ │ ├── matrix_factorisation.inl │ │ ├── matrix_interpolation.hpp │ │ ├── matrix_interpolation.inl │ │ ├── matrix_major_storage.hpp │ │ ├── matrix_major_storage.inl │ │ ├── matrix_operation.hpp │ │ ├── matrix_operation.inl │ │ ├── matrix_query.hpp │ │ ├── matrix_query.inl │ │ ├── matrix_transform_2d.hpp │ │ ├── matrix_transform_2d.inl │ │ ├── mixed_product.hpp │ │ ├── mixed_product.inl │ │ ├── norm.hpp │ │ ├── norm.inl │ │ ├── normal.hpp │ │ ├── normal.inl │ │ ├── normalize_dot.hpp │ │ ├── normalize_dot.inl │ │ ├── number_precision.hpp │ │ ├── number_precision.inl │ │ ├── optimum_pow.hpp │ │ ├── optimum_pow.inl │ │ ├── orthonormalize.hpp │ │ ├── orthonormalize.inl │ │ ├── perpendicular.hpp │ │ ├── perpendicular.inl │ │ ├── polar_coordinates.hpp │ │ ├── polar_coordinates.inl │ │ ├── projection.hpp │ │ ├── projection.inl │ │ ├── quaternion.hpp │ │ ├── quaternion.inl │ │ ├── range.hpp │ │ ├── raw_data.hpp │ │ ├── raw_data.inl │ │ ├── rotate_normalized_axis.hpp │ │ ├── rotate_normalized_axis.inl │ │ ├── rotate_vector.hpp │ │ ├── rotate_vector.inl │ │ ├── scalar_multiplication.hpp │ │ ├── scalar_relational.hpp │ │ ├── scalar_relational.inl │ │ ├── spline.hpp │ │ ├── spline.inl │ │ ├── std_based_type.hpp │ │ ├── std_based_type.inl │ │ ├── string_cast.hpp │ │ ├── string_cast.inl │ │ ├── texture.hpp │ │ ├── texture.inl │ │ ├── transform.hpp │ │ ├── transform.inl │ │ ├── transform2.hpp │ │ ├── transform2.inl │ │ ├── type_aligned.hpp │ │ ├── type_aligned.inl │ │ ├── type_trait.hpp │ │ ├── type_trait.inl │ │ ├── vec_swizzle.hpp │ │ ├── vector_angle.hpp │ │ ├── vector_angle.inl │ │ ├── vector_query.hpp │ │ ├── vector_query.inl │ │ ├── wrap.hpp │ │ └── wrap.inl │ ├── integer.hpp │ ├── mat2x2.hpp │ ├── mat2x3.hpp │ ├── mat2x4.hpp │ ├── mat3x2.hpp │ ├── mat3x3.hpp │ ├── mat3x4.hpp │ ├── mat4x2.hpp │ ├── mat4x3.hpp │ ├── mat4x4.hpp │ ├── matrix.hpp │ ├── packing.hpp │ ├── simd │ │ ├── common.h │ │ ├── exponential.h │ │ ├── geometric.h │ │ ├── integer.h │ │ ├── matrix.h │ │ ├── packing.h │ │ ├── platform.h │ │ ├── trigonometric.h │ │ └── vector_relational.h │ ├── trigonometric.hpp │ ├── vec2.hpp │ ├── vec3.hpp │ ├── vec4.hpp │ └── vector_relational.hpp ├── gperftools │ ├── .gitignore │ ├── .travis.yml │ ├── AUTHORS │ ├── COPYING │ ├── ChangeLog │ ├── ChangeLog.old │ ├── INSTALL │ ├── MCELL_INFO.txt │ ├── Makefile.am │ ├── Makefile.in │ ├── NEWS │ ├── README │ ├── README_windows.txt │ ├── TODO │ ├── aclocal.m4 │ ├── autogen.sh │ ├── benchmark │ │ ├── binary_trees.cc │ │ ├── malloc_bench.cc │ │ ├── run_benchmark.c │ │ └── run_benchmark.h │ ├── config.guess │ ├── config.sub │ ├── configure │ ├── configure.ac │ ├── docs │ │ ├── cpuprofile-fileformat.html │ │ ├── cpuprofile.html │ │ ├── designstyle.css │ │ ├── heap-example1.png │ │ ├── heap_checker.html │ │ ├── heapprofile.html │ │ ├── index.html │ │ ├── overview.dot │ │ ├── overview.gif │ │ ├── pageheap.dot │ │ ├── pageheap.gif │ │ ├── pprof-test-big.gif │ │ ├── pprof-test.gif │ │ ├── pprof-vsnprintf-big.gif │ │ ├── pprof-vsnprintf.gif │ │ ├── pprof.1 │ │ ├── pprof.see_also │ │ ├── pprof_remote_servers.html │ │ ├── spanmap.dot │ │ ├── spanmap.gif │ │ ├── t-test1.times.txt │ │ ├── tcmalloc-opspercpusec.vs.threads.1024.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.128.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.131072.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.16384.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.2048.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.256.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.32768.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.4096.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.512.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.64.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.65536.bytes.png │ │ ├── tcmalloc-opspercpusec.vs.threads.8192.bytes.png │ │ ├── tcmalloc-opspersec.vs.size.1.threads.png │ │ ├── tcmalloc-opspersec.vs.size.12.threads.png │ │ ├── tcmalloc-opspersec.vs.size.16.threads.png │ │ ├── tcmalloc-opspersec.vs.size.2.threads.png │ │ ├── tcmalloc-opspersec.vs.size.20.threads.png │ │ ├── tcmalloc-opspersec.vs.size.3.threads.png │ │ ├── tcmalloc-opspersec.vs.size.4.threads.png │ │ ├── tcmalloc-opspersec.vs.size.5.threads.png │ │ ├── tcmalloc-opspersec.vs.size.8.threads.png │ │ ├── tcmalloc.html │ │ ├── threadheap.dot │ │ └── threadheap.gif │ ├── gperftools.sln │ ├── install-sh │ ├── ltmain.sh │ ├── m4 │ │ ├── ac_have_attribute.m4 │ │ ├── acx_nanosleep.m4 │ │ ├── acx_pthread.m4 │ │ ├── ax_cxx_compile_stdcxx.m4 │ │ ├── ax_generate_changelog.m4 │ │ ├── compiler_characteristics.m4 │ │ ├── install_prefix.m4 │ │ ├── libtool.m4 │ │ ├── ltoptions.m4 │ │ ├── ltsugar.m4 │ │ ├── ltversion.m4 │ │ ├── lt~obsolete.m4 │ │ ├── namespaces.m4 │ │ ├── pc_from_ucontext.m4 │ │ ├── program_invocation_name.m4 │ │ └── stl_namespace.m4 │ ├── missing │ ├── packages │ │ ├── deb.sh │ │ ├── deb │ │ │ ├── README │ │ │ ├── changelog │ │ │ ├── compat │ │ │ ├── control │ │ │ ├── copyright │ │ │ ├── docs │ │ │ ├── libgperftools-dev.dirs │ │ │ ├── libgperftools-dev.install │ │ │ ├── libgperftools0.dirs │ │ │ ├── libgperftools0.install │ │ │ ├── libgperftools0.manpages │ │ │ └── rules │ │ ├── rpm.sh │ │ └── rpm │ │ │ └── rpm.spec │ ├── src │ │ ├── addressmap-inl.h │ │ ├── base │ │ │ ├── arm_instruction_set_select.h │ │ │ ├── atomicops-internals-arm-generic.h │ │ │ ├── atomicops-internals-arm-v6plus.h │ │ │ ├── atomicops-internals-gcc.h │ │ │ ├── atomicops-internals-linuxppc.h │ │ │ ├── atomicops-internals-macosx.h │ │ │ ├── atomicops-internals-mips.h │ │ │ ├── atomicops-internals-windows.h │ │ │ ├── atomicops-internals-x86.cc │ │ │ ├── atomicops-internals-x86.h │ │ │ ├── atomicops.h │ │ │ ├── basictypes.h │ │ │ ├── commandlineflags.h │ │ │ ├── dynamic_annotations.c │ │ │ ├── dynamic_annotations.h │ │ │ ├── elf_mem_image.cc │ │ │ ├── elf_mem_image.h │ │ │ ├── elfcore.h │ │ │ ├── googleinit.h │ │ │ ├── linux_syscall_support.h │ │ │ ├── linuxthreads.cc │ │ │ ├── linuxthreads.h │ │ │ ├── logging.cc │ │ │ ├── logging.h │ │ │ ├── low_level_alloc.cc │ │ │ ├── low_level_alloc.h │ │ │ ├── simple_mutex.h │ │ │ ├── spinlock.cc │ │ │ ├── spinlock.h │ │ │ ├── spinlock_internal.cc │ │ │ ├── spinlock_internal.h │ │ │ ├── spinlock_linux-inl.h │ │ │ ├── spinlock_posix-inl.h │ │ │ ├── spinlock_win32-inl.h │ │ │ ├── stl_allocator.h │ │ │ ├── sysinfo.cc │ │ │ ├── sysinfo.h │ │ │ ├── thread_annotations.h │ │ │ ├── thread_lister.c │ │ │ ├── thread_lister.h │ │ │ ├── vdso_support.cc │ │ │ └── vdso_support.h │ │ ├── central_freelist.cc │ │ ├── central_freelist.h │ │ ├── common.cc │ │ ├── common.h │ │ ├── config.h.in │ │ ├── config_for_unittests.h │ │ ├── debugallocation.cc │ │ ├── emergency_malloc.cc │ │ ├── emergency_malloc.h │ │ ├── emergency_malloc_for_stacktrace.cc │ │ ├── fake_stacktrace_scope.cc │ │ ├── getenv_safe.h │ │ ├── getpc.h │ │ ├── google │ │ │ ├── heap-checker.h │ │ │ ├── heap-profiler.h │ │ │ ├── malloc_extension.h │ │ │ ├── malloc_extension_c.h │ │ │ ├── malloc_hook.h │ │ │ ├── malloc_hook_c.h │ │ │ ├── profiler.h │ │ │ ├── stacktrace.h │ │ │ └── tcmalloc.h │ │ ├── gperftools │ │ │ ├── heap-checker.h │ │ │ ├── heap-profiler.h │ │ │ ├── malloc_extension.h │ │ │ ├── malloc_extension_c.h │ │ │ ├── malloc_hook.h │ │ │ ├── malloc_hook_c.h │ │ │ ├── nallocx.h │ │ │ ├── profiler.h │ │ │ ├── stacktrace.h │ │ │ └── tcmalloc.h.in │ │ ├── heap-checker-bcad.cc │ │ ├── heap-checker.cc │ │ ├── heap-profile-stats.h │ │ ├── heap-profile-table.cc │ │ ├── heap-profile-table.h │ │ ├── heap-profiler.cc │ │ ├── internal_logging.cc │ │ ├── internal_logging.h │ │ ├── libc_override.h │ │ ├── libc_override_gcc_and_weak.h │ │ ├── libc_override_glibc.h │ │ ├── libc_override_osx.h │ │ ├── libc_override_redefine.h │ │ ├── linked_list.h │ │ ├── malloc_extension.cc │ │ ├── malloc_hook-inl.h │ │ ├── malloc_hook.cc │ │ ├── malloc_hook_mmap_freebsd.h │ │ ├── malloc_hook_mmap_linux.h │ │ ├── maybe_emergency_malloc.h │ │ ├── maybe_threads.cc │ │ ├── maybe_threads.h │ │ ├── memfs_malloc.cc │ │ ├── memory_region_map.cc │ │ ├── memory_region_map.h │ │ ├── packed-cache-inl.h │ │ ├── page_heap.cc │ │ ├── page_heap.h │ │ ├── page_heap_allocator.h │ │ ├── pagemap.h │ │ ├── pprof │ │ ├── profile-handler.cc │ │ ├── profile-handler.h │ │ ├── profiledata.cc │ │ ├── profiledata.h │ │ ├── profiler.cc │ │ ├── raw_printer.cc │ │ ├── raw_printer.h │ │ ├── sampler.cc │ │ ├── sampler.h │ │ ├── solaris │ │ │ └── libstdc++.la │ │ ├── span.cc │ │ ├── span.h │ │ ├── stack_trace_table.cc │ │ ├── stack_trace_table.h │ │ ├── stacktrace.cc │ │ ├── stacktrace_arm-inl.h │ │ ├── stacktrace_generic-inl.h │ │ ├── stacktrace_impl_setup-inl.h │ │ ├── stacktrace_instrument-inl.h │ │ ├── stacktrace_libgcc-inl.h │ │ ├── stacktrace_libunwind-inl.h │ │ ├── stacktrace_powerpc-darwin-inl.h │ │ ├── stacktrace_powerpc-inl.h │ │ ├── stacktrace_powerpc-linux-inl.h │ │ ├── stacktrace_win32-inl.h │ │ ├── stacktrace_x86-inl.h │ │ ├── static_vars.cc │ │ ├── static_vars.h │ │ ├── symbolize.cc │ │ ├── symbolize.h │ │ ├── system-alloc.cc │ │ ├── system-alloc.h │ │ ├── tcmalloc.cc │ │ ├── tcmalloc.h │ │ ├── tcmalloc_guard.h │ │ ├── tests │ │ │ ├── addressmap_unittest.cc │ │ │ ├── atomicops_unittest.cc │ │ │ ├── current_allocated_bytes_test.cc │ │ │ ├── debugallocation_test.cc │ │ │ ├── debugallocation_test.sh │ │ │ ├── frag_unittest.cc │ │ │ ├── getpc_test.cc │ │ │ ├── heap-checker-death_unittest.sh │ │ │ ├── heap-checker_unittest.cc │ │ │ ├── heap-checker_unittest.sh │ │ │ ├── heap-profiler_unittest.cc │ │ │ ├── heap-profiler_unittest.sh │ │ │ ├── large_heap_fragmentation_unittest.cc │ │ │ ├── low_level_alloc_unittest.cc │ │ │ ├── malloc_extension_c_test.c │ │ │ ├── malloc_extension_test.cc │ │ │ ├── malloc_hook_test.cc │ │ │ ├── markidle_unittest.cc │ │ │ ├── maybe_threads_unittest.sh │ │ │ ├── memalign_unittest.cc │ │ │ ├── packed-cache_test.cc │ │ │ ├── page_heap_test.cc │ │ │ ├── pagemap_unittest.cc │ │ │ ├── profile-handler_unittest.cc │ │ │ ├── profiledata_unittest.cc │ │ │ ├── profiler_unittest.cc │ │ │ ├── profiler_unittest.sh │ │ │ ├── raw_printer_test.cc │ │ │ ├── realloc_unittest.cc │ │ │ ├── sampler_test.cc │ │ │ ├── sampling_test.cc │ │ │ ├── sampling_test.sh │ │ │ ├── simple_compat_test.cc │ │ │ ├── stack_trace_table_test.cc │ │ │ ├── stacktrace_unittest.cc │ │ │ ├── system-alloc_unittest.cc │ │ │ ├── tcmalloc_large_unittest.cc │ │ │ ├── tcmalloc_unittest.cc │ │ │ ├── tcmalloc_unittest.sh │ │ │ ├── testutil.cc │ │ │ ├── testutil.h │ │ │ └── thread_dealloc_unittest.cc │ │ ├── third_party │ │ │ └── valgrind.h │ │ ├── thread_cache.cc │ │ ├── thread_cache.h │ │ └── windows │ │ │ ├── TODO │ │ │ ├── addr2line-pdb.c │ │ │ ├── auto_testing_hook.h │ │ │ ├── config.h │ │ │ ├── get_mangled_names.cc │ │ │ ├── google │ │ │ └── tcmalloc.h │ │ │ ├── gperftools │ │ │ ├── tcmalloc.h │ │ │ └── tcmalloc.h.in │ │ │ ├── ia32_modrm_map.cc │ │ │ ├── ia32_opcode_map.cc │ │ │ ├── mingw.h │ │ │ ├── mini_disassembler.cc │ │ │ ├── mini_disassembler.h │ │ │ ├── mini_disassembler_types.h │ │ │ ├── nm-pdb.c │ │ │ ├── override_functions.cc │ │ │ ├── patch_functions.cc │ │ │ ├── port.cc │ │ │ ├── port.h │ │ │ ├── preamble_patcher.cc │ │ │ ├── preamble_patcher.h │ │ │ ├── preamble_patcher_test.cc │ │ │ ├── preamble_patcher_with_stub.cc │ │ │ ├── shortproc.asm │ │ │ └── system-alloc.cc │ ├── test-driver │ └── vsprojects │ │ ├── addr2line-pdb │ │ ├── addr2line-pdb.vcxproj │ │ └── addr2line-pdb.vcxproj.filters │ │ ├── addressmap_unittest │ │ ├── addressmap_unittest.vcxproj │ │ └── addressmap_unittest.vcxproj.filters │ │ ├── current_allocated_bytes_test │ │ ├── current_allocated_bytes_test.vcxproj │ │ └── current_allocated_bytes_test.vcxproj.filters │ │ ├── frag_unittest │ │ ├── frag_unittest.vcxproj │ │ └── frag_unittest.vcxproj.filters │ │ ├── libtcmalloc_minimal │ │ ├── libtcmalloc_minimal.vcxproj │ │ └── libtcmalloc_minimal.vcxproj.filters │ │ ├── low_level_alloc_unittest │ │ ├── low_level_alloc_unittest.vcxproj │ │ └── low_level_alloc_unittest.vcxproj.filters │ │ ├── malloc_extension_test │ │ ├── malloc_extension_test.vcxproj │ │ └── malloc_extension_test.vcxproj.filters │ │ ├── malloc_hook_test │ │ ├── malloc_hook_test.vcxproj │ │ └── malloc_hook_test.vcxproj.filters │ │ ├── markidle_unittest │ │ ├── markidle_unittest.vcxproj │ │ └── markidle_unittest.vcxproj.filters │ │ ├── nm-pdb │ │ ├── nm-pdb.vcxproj │ │ └── nm-pdb.vcxproj.filters │ │ ├── packed-cache_test │ │ ├── packed-cache_test.vcxproj │ │ └── packed-cache_test.vcxproj.filters │ │ ├── page_heap_test │ │ ├── page_heap_test.vcxproj │ │ └── page_heap_test.vcxproj.filters │ │ ├── pagemap_unittest │ │ ├── pagemap_unittest.vcxproj │ │ └── pagemap_unittest.vcxproj.filters │ │ ├── preamble_patcher_test │ │ ├── preamble_patcher_test.vcxproj │ │ └── preamble_patcher_test.vcxproj.filters │ │ ├── realloc_unittest │ │ ├── realloc_unittest.vcxproj │ │ └── realloc_unittest.vcxproj.filters │ │ ├── sampler_test │ │ ├── sampler_test.vcxproj │ │ └── sampler_test.vcxproj.filters │ │ ├── stack_trace_table_test │ │ ├── stack_trace_table_test.vcxproj │ │ └── stack_trace_table_test.vcxproj.filters │ │ ├── system-alloc_unittest │ │ ├── system-alloc_unittest.vcxproj │ │ └── system-alloc_unittest.vcxproj.filters │ │ ├── tcmalloc_minimal_large │ │ ├── tcmalloc_minimal_large_unittest.vcxproj │ │ └── tcmalloc_minimal_large_unittest.vcxproj.filters │ │ ├── tcmalloc_minimal_unittest │ │ ├── tcmalloc_minimal_unittest.vcxproj │ │ └── tcmalloc_minimal_unittest.vcxproj.filters │ │ └── thread_dealloc_unittest │ │ ├── thread_dealloc_unittest.vcxproj │ │ └── thread_dealloc_unittest.vcxproj.filters ├── jsoncpp │ ├── .clang-format │ ├── .clang-tidy │ ├── .gitattributes │ ├── .github │ │ └── ISSUE_TEMPLATE │ │ │ ├── bug_report.md │ │ │ └── feature_request.md │ ├── .gitignore │ ├── .travis.yml │ ├── .travis_scripts │ │ ├── cmake_builder.sh │ │ ├── meson_builder.sh │ │ ├── run-clang-format.py │ │ ├── run-clang-format.sh │ │ ├── travis.before_install.linux.sh │ │ ├── travis.before_install.osx.sh │ │ ├── travis.install.linux.sh │ │ └── travis.install.osx.sh │ ├── AUTHORS │ ├── CMakeLists.txt │ ├── CONTRIBUTING.md │ ├── LICENSE │ ├── MCELL_INFO.txt │ ├── README.md │ ├── amalgamate.py │ ├── appveyor.yml │ ├── dev.makefile │ ├── devtools │ │ ├── __init__.py │ │ ├── agent_vmw7.json │ │ ├── agent_vmxp.json │ │ ├── antglob.py │ │ ├── batchbuild.py │ │ ├── fixeol.py │ │ ├── licenseupdater.py │ │ └── tarball.py │ ├── doc │ │ ├── doxyfile.in │ │ ├── footer.html │ │ ├── header.html │ │ ├── jsoncpp.dox │ │ ├── readme.txt │ │ ├── roadmap.dox │ │ └── web_doxyfile.in │ ├── doxybuild.py │ ├── example │ │ ├── CMakeLists.txt │ │ ├── README.md │ │ ├── readFromStream │ │ │ ├── errorFormat.json │ │ │ ├── readFromStream.cpp │ │ │ └── withComment.json │ │ ├── readFromString │ │ │ └── readFromString.cpp │ │ ├── streamWrite │ │ │ └── streamWrite.cpp │ │ └── stringWrite │ │ │ └── stringWrite.cpp │ ├── include │ │ ├── CMakeLists.txt │ │ └── json │ │ │ ├── allocator.h │ │ │ ├── assertions.h │ │ │ ├── config.h │ │ │ ├── forwards.h │ │ │ ├── json.h │ │ │ ├── json_features.h │ │ │ ├── reader.h │ │ │ ├── value.h │ │ │ ├── version.h │ │ │ └── writer.h │ ├── meson.build │ ├── meson_options.txt │ ├── pkg-config │ │ └── jsoncpp.pc.in │ ├── src │ │ ├── CMakeLists.txt │ │ ├── jsontestrunner │ │ │ ├── CMakeLists.txt │ │ │ └── main.cpp │ │ ├── lib_json │ │ │ ├── CMakeLists.txt │ │ │ ├── json_reader.cpp │ │ │ ├── json_tool.h │ │ │ ├── json_value.cpp │ │ │ ├── json_valueiterator.inl │ │ │ └── json_writer.cpp │ │ └── test_lib_json │ │ │ ├── CMakeLists.txt │ │ │ ├── fuzz.cpp │ │ │ ├── fuzz.dict │ │ │ ├── fuzz.h │ │ │ ├── jsontest.cpp │ │ │ ├── jsontest.h │ │ │ └── main.cpp │ ├── test │ │ ├── cleantests.py │ │ ├── data │ │ │ ├── fail_test_array_01.json │ │ │ ├── fail_test_array_02.json │ │ │ ├── fail_test_object_01.json │ │ │ ├── fail_test_stack_limit.json │ │ │ ├── legacy_test_array_01.expected │ │ │ ├── legacy_test_array_01.json │ │ │ ├── legacy_test_array_02.expected │ │ │ ├── legacy_test_array_02.json │ │ │ ├── legacy_test_array_03.expected │ │ │ ├── legacy_test_array_03.json │ │ │ ├── legacy_test_array_04.expected │ │ │ ├── legacy_test_array_04.json │ │ │ ├── legacy_test_array_05.expected │ │ │ ├── legacy_test_array_05.json │ │ │ ├── legacy_test_array_06.expected │ │ │ ├── legacy_test_array_06.json │ │ │ ├── legacy_test_array_07.expected │ │ │ ├── legacy_test_array_07.json │ │ │ ├── legacy_test_basic_01.expected │ │ │ ├── legacy_test_basic_01.json │ │ │ ├── legacy_test_basic_02.expected │ │ │ ├── legacy_test_basic_02.json │ │ │ ├── legacy_test_basic_03.expected │ │ │ ├── legacy_test_basic_03.json │ │ │ ├── legacy_test_basic_04.expected │ │ │ ├── legacy_test_basic_04.json │ │ │ ├── legacy_test_basic_05.expected │ │ │ ├── legacy_test_basic_05.json │ │ │ ├── legacy_test_basic_06.expected │ │ │ ├── legacy_test_basic_06.json │ │ │ ├── legacy_test_basic_07.expected │ │ │ ├── legacy_test_basic_07.json │ │ │ ├── legacy_test_basic_08.expected │ │ │ ├── legacy_test_basic_08.json │ │ │ ├── legacy_test_basic_09.expected │ │ │ ├── legacy_test_basic_09.json │ │ │ ├── legacy_test_comment_00.expected │ │ │ ├── legacy_test_comment_00.json │ │ │ ├── legacy_test_comment_01.expected │ │ │ ├── legacy_test_comment_01.json │ │ │ ├── legacy_test_comment_02.expected │ │ │ ├── legacy_test_comment_02.json │ │ │ ├── legacy_test_complex_01.expected │ │ │ ├── legacy_test_complex_01.json │ │ │ ├── legacy_test_integer_01.expected │ │ │ ├── legacy_test_integer_01.json │ │ │ ├── legacy_test_integer_02.expected │ │ │ ├── legacy_test_integer_02.json │ │ │ ├── legacy_test_integer_03.expected │ │ │ ├── legacy_test_integer_03.json │ │ │ ├── legacy_test_integer_04.expected │ │ │ ├── legacy_test_integer_04.json │ │ │ ├── legacy_test_integer_05.expected │ │ │ ├── legacy_test_integer_05.json │ │ │ ├── legacy_test_integer_06_64bits.expected │ │ │ ├── legacy_test_integer_06_64bits.json │ │ │ ├── legacy_test_integer_07_64bits.expected │ │ │ ├── legacy_test_integer_07_64bits.json │ │ │ ├── legacy_test_integer_08_64bits.expected │ │ │ ├── legacy_test_integer_08_64bits.json │ │ │ ├── legacy_test_large_01.expected │ │ │ ├── legacy_test_large_01.json │ │ │ ├── legacy_test_object_01.expected │ │ │ ├── legacy_test_object_01.json │ │ │ ├── legacy_test_object_02.expected │ │ │ ├── legacy_test_object_02.json │ │ │ ├── legacy_test_object_03.expected │ │ │ ├── legacy_test_object_03.json │ │ │ ├── legacy_test_object_04.expected │ │ │ ├── legacy_test_object_04.json │ │ │ ├── legacy_test_preserve_comment_01.expected │ │ │ ├── legacy_test_preserve_comment_01.json │ │ │ ├── legacy_test_real_01.expected │ │ │ ├── legacy_test_real_01.json │ │ │ ├── legacy_test_real_02.expected │ │ │ ├── legacy_test_real_02.json │ │ │ ├── legacy_test_real_03.expected │ │ │ ├── legacy_test_real_03.json │ │ │ ├── legacy_test_real_04.expected │ │ │ ├── legacy_test_real_04.json │ │ │ ├── legacy_test_real_05.expected │ │ │ ├── legacy_test_real_05.json │ │ │ ├── legacy_test_real_06.expected │ │ │ ├── legacy_test_real_06.json │ │ │ ├── legacy_test_real_07.expected │ │ │ ├── legacy_test_real_07.json │ │ │ ├── legacy_test_real_08.expected │ │ │ ├── legacy_test_real_08.json │ │ │ ├── legacy_test_real_09.expected │ │ │ ├── legacy_test_real_09.json │ │ │ ├── legacy_test_real_10.expected │ │ │ ├── legacy_test_real_10.json │ │ │ ├── legacy_test_real_11.expected │ │ │ ├── legacy_test_real_11.json │ │ │ ├── legacy_test_real_12.expected │ │ │ ├── legacy_test_real_12.json │ │ │ ├── legacy_test_string_01.expected │ │ │ ├── legacy_test_string_01.json │ │ │ ├── legacy_test_string_02.expected │ │ │ ├── legacy_test_string_02.json │ │ │ ├── legacy_test_string_03.expected │ │ │ ├── legacy_test_string_03.json │ │ │ ├── legacy_test_string_04.expected │ │ │ ├── legacy_test_string_04.json │ │ │ ├── legacy_test_string_05.expected │ │ │ ├── legacy_test_string_05.json │ │ │ ├── legacy_test_string_unicode_01.expected │ │ │ ├── legacy_test_string_unicode_01.json │ │ │ ├── legacy_test_string_unicode_02.expected │ │ │ ├── legacy_test_string_unicode_02.json │ │ │ ├── legacy_test_string_unicode_03.expected │ │ │ ├── legacy_test_string_unicode_03.json │ │ │ ├── legacy_test_string_unicode_04.expected │ │ │ ├── legacy_test_string_unicode_04.json │ │ │ ├── legacy_test_string_unicode_05.expected │ │ │ ├── legacy_test_string_unicode_05.json │ │ │ ├── test_array_08.expected │ │ │ ├── test_array_08.json │ │ │ ├── test_object_05.expected │ │ │ └── test_object_05.json │ │ ├── generate_expected.py │ │ ├── jsonchecker │ │ │ ├── fail1.json │ │ │ ├── fail10.json │ │ │ ├── fail11.json │ │ │ ├── fail12.json │ │ │ ├── fail13.json │ │ │ ├── fail14.json │ │ │ ├── fail15.json │ │ │ ├── fail16.json │ │ │ ├── fail17.json │ │ │ ├── fail18.json │ │ │ ├── fail19.json │ │ │ ├── fail2.json │ │ │ ├── fail20.json │ │ │ ├── fail21.json │ │ │ ├── fail22.json │ │ │ ├── fail23.json │ │ │ ├── fail24.json │ │ │ ├── fail25.json │ │ │ ├── fail26.json │ │ │ ├── fail27.json │ │ │ ├── fail28.json │ │ │ ├── fail29.json │ │ │ ├── fail3.json │ │ │ ├── fail30.json │ │ │ ├── fail31.json │ │ │ ├── fail32.json │ │ │ ├── fail33.json │ │ │ ├── fail4.json │ │ │ ├── fail5.json │ │ │ ├── fail6.json │ │ │ ├── fail7.json │ │ │ ├── fail8.json │ │ │ ├── fail9.json │ │ │ ├── pass1.json │ │ │ ├── pass2.json │ │ │ ├── pass3.json │ │ │ └── readme.txt │ │ ├── pyjsontestrunner.py │ │ ├── runjsontests.py │ │ └── rununittests.py │ └── version.in ├── pybind11 │ ├── .appveyor.yml │ ├── .clang-format │ ├── .clang-tidy │ ├── .cmake-format.yaml │ ├── .github │ │ ├── CODEOWNERS │ │ ├── CONTRIBUTING.md │ │ ├── ISSUE_TEMPLATE │ │ │ ├── bug-report.yml │ │ │ └── config.yml │ │ ├── dependabot.yml │ │ ├── labeler.yml │ │ ├── labeler_merged.yml │ │ ├── pull_request_template.md │ │ └── workflows │ │ │ ├── ci.yml │ │ │ ├── configure.yml │ │ │ ├── format.yml │ │ │ ├── labeler.yml │ │ │ ├── pip.yml │ │ │ └── upstream.yml │ ├── .gitignore │ ├── .pre-commit-config.yaml │ ├── .readthedocs.yml │ ├── CMakeLists.txt │ ├── LICENSE │ ├── MANIFEST.in │ ├── README.rst │ ├── docs │ │ ├── Doxyfile │ │ ├── Makefile │ │ ├── _static │ │ │ └── theme_overrides.css │ │ ├── advanced │ │ │ ├── cast │ │ │ │ ├── chrono.rst │ │ │ │ ├── custom.rst │ │ │ │ ├── eigen.rst │ │ │ │ ├── functional.rst │ │ │ │ ├── index.rst │ │ │ │ ├── overview.rst │ │ │ │ ├── stl.rst │ │ │ │ └── strings.rst │ │ │ ├── classes.rst │ │ │ ├── embedding.rst │ │ │ ├── exceptions.rst │ │ │ ├── functions.rst │ │ │ ├── misc.rst │ │ │ ├── pycpp │ │ │ │ ├── index.rst │ │ │ │ ├── numpy.rst │ │ │ │ ├── object.rst │ │ │ │ └── utilities.rst │ │ │ └── smart_ptrs.rst │ │ ├── basics.rst │ │ ├── benchmark.py │ │ ├── benchmark.rst │ │ ├── changelog.rst │ │ ├── classes.rst │ │ ├── cmake │ │ │ └── index.rst │ │ ├── compiling.rst │ │ ├── conf.py │ │ ├── faq.rst │ │ ├── index.rst │ │ ├── installing.rst │ │ ├── limitations.rst │ │ ├── pybind11-logo.png │ │ ├── pybind11_vs_boost_python1.png │ │ ├── pybind11_vs_boost_python1.svg │ │ ├── pybind11_vs_boost_python2.png │ │ ├── pybind11_vs_boost_python2.svg │ │ ├── reference.rst │ │ ├── release.rst │ │ ├── requirements.txt │ │ └── upgrade.rst │ ├── include │ │ └── pybind11 │ │ │ ├── attr.h │ │ │ ├── buffer_info.h │ │ │ ├── cast.h │ │ │ ├── chrono.h │ │ │ ├── common.h │ │ │ ├── complex.h │ │ │ ├── detail │ │ │ ├── class.h │ │ │ ├── common.h │ │ │ ├── descr.h │ │ │ ├── init.h │ │ │ ├── internals.h │ │ │ ├── type_caster_base.h │ │ │ └── typeid.h │ │ │ ├── eigen.h │ │ │ ├── embed.h │ │ │ ├── eval.h │ │ │ ├── functional.h │ │ │ ├── gil.h │ │ │ ├── iostream.h │ │ │ ├── numpy.h │ │ │ ├── operators.h │ │ │ ├── options.h │ │ │ ├── pybind11.h │ │ │ ├── pytypes.h │ │ │ ├── stl.h │ │ │ ├── stl │ │ │ └── filesystem.h │ │ │ └── stl_bind.h │ ├── noxfile.py │ ├── pybind11 │ │ ├── __init__.py │ │ ├── __main__.py │ │ ├── _version.py │ │ ├── _version.pyi │ │ ├── commands.py │ │ ├── py.typed │ │ ├── setup_helpers.py │ │ └── setup_helpers.pyi │ ├── pyproject.toml │ ├── setup.cfg │ ├── setup.py │ ├── tests │ │ ├── CMakeLists.txt │ │ ├── conftest.py │ │ ├── constructor_stats.h │ │ ├── cross_module_gil_utils.cpp │ │ ├── env.py │ │ ├── extra_python_package │ │ │ ├── pytest.ini │ │ │ └── test_files.py │ │ ├── extra_setuptools │ │ │ ├── pytest.ini │ │ │ └── test_setuphelper.py │ │ ├── local_bindings.h │ │ ├── object.h │ │ ├── pybind11_cross_module_tests.cpp │ │ ├── pybind11_tests.cpp │ │ ├── pybind11_tests.h │ │ ├── pytest.ini │ │ ├── requirements.txt │ │ ├── test_async.cpp │ │ ├── test_async.py │ │ ├── test_buffers.cpp │ │ ├── test_buffers.py │ │ ├── test_builtin_casters.cpp │ │ ├── test_builtin_casters.py │ │ ├── test_call_policies.cpp │ │ ├── test_call_policies.py │ │ ├── test_callbacks.cpp │ │ ├── test_callbacks.py │ │ ├── test_chrono.cpp │ │ ├── test_chrono.py │ │ ├── test_class.cpp │ │ ├── test_class.py │ │ ├── test_cmake_build │ │ │ ├── CMakeLists.txt │ │ │ ├── embed.cpp │ │ │ ├── installed_embed │ │ │ │ └── CMakeLists.txt │ │ │ ├── installed_function │ │ │ │ └── CMakeLists.txt │ │ │ ├── installed_target │ │ │ │ └── CMakeLists.txt │ │ │ ├── main.cpp │ │ │ ├── subdirectory_embed │ │ │ │ └── CMakeLists.txt │ │ │ ├── subdirectory_function │ │ │ │ └── CMakeLists.txt │ │ │ ├── subdirectory_target │ │ │ │ └── CMakeLists.txt │ │ │ └── test.py │ │ ├── test_const_name.cpp │ │ ├── test_const_name.py │ │ ├── test_constants_and_functions.cpp │ │ ├── test_constants_and_functions.py │ │ ├── test_copy_move.cpp │ │ ├── test_copy_move.py │ │ ├── test_custom_type_casters.cpp │ │ ├── test_custom_type_casters.py │ │ ├── test_custom_type_setup.cpp │ │ ├── test_custom_type_setup.py │ │ ├── test_docstring_options.cpp │ │ ├── test_docstring_options.py │ │ ├── test_eigen.cpp │ │ ├── test_eigen.py │ │ ├── test_embed │ │ │ ├── CMakeLists.txt │ │ │ ├── catch.cpp │ │ │ ├── external_module.cpp │ │ │ ├── test_interpreter.cpp │ │ │ ├── test_interpreter.py │ │ │ └── test_trampoline.py │ │ ├── test_enum.cpp │ │ ├── test_enum.py │ │ ├── test_eval.cpp │ │ ├── test_eval.py │ │ ├── test_eval_call.py │ │ ├── test_exceptions.cpp │ │ ├── test_exceptions.h │ │ ├── test_exceptions.py │ │ ├── test_factory_constructors.cpp │ │ ├── test_factory_constructors.py │ │ ├── test_gil_scoped.cpp │ │ ├── test_gil_scoped.py │ │ ├── test_iostream.cpp │ │ ├── test_iostream.py │ │ ├── test_kwargs_and_defaults.cpp │ │ ├── test_kwargs_and_defaults.py │ │ ├── test_local_bindings.cpp │ │ ├── test_local_bindings.py │ │ ├── test_methods_and_attributes.cpp │ │ ├── test_methods_and_attributes.py │ │ ├── test_modules.cpp │ │ ├── test_modules.py │ │ ├── test_multiple_inheritance.cpp │ │ ├── test_multiple_inheritance.py │ │ ├── test_numpy_array.cpp │ │ ├── test_numpy_array.py │ │ ├── test_numpy_dtypes.cpp │ │ ├── test_numpy_dtypes.py │ │ ├── test_numpy_vectorize.cpp │ │ ├── test_numpy_vectorize.py │ │ ├── test_opaque_types.cpp │ │ ├── test_opaque_types.py │ │ ├── test_operator_overloading.cpp │ │ ├── test_operator_overloading.py │ │ ├── test_pickling.cpp │ │ ├── test_pickling.py │ │ ├── test_pytypes.cpp │ │ ├── test_pytypes.py │ │ ├── test_sequences_and_iterators.cpp │ │ ├── test_sequences_and_iterators.py │ │ ├── test_smart_ptr.cpp │ │ ├── test_smart_ptr.py │ │ ├── test_stl.cpp │ │ ├── test_stl.py │ │ ├── test_stl_binders.cpp │ │ ├── test_stl_binders.py │ │ ├── test_tagbased_polymorphic.cpp │ │ ├── test_tagbased_polymorphic.py │ │ ├── test_thread.cpp │ │ ├── test_thread.py │ │ ├── test_union.cpp │ │ ├── test_union.py │ │ ├── test_virtual_functions.cpp │ │ ├── test_virtual_functions.py │ │ ├── valgrind-numpy-scipy.supp │ │ └── valgrind-python.supp │ └── tools │ │ ├── FindCatch.cmake │ │ ├── FindEigen3.cmake │ │ ├── FindPythonLibsNew.cmake │ │ ├── check-style.sh │ │ ├── cmake_uninstall.cmake.in │ │ ├── libsize.py │ │ ├── make_changelog.py │ │ ├── pybind11Common.cmake │ │ ├── pybind11Config.cmake.in │ │ ├── pybind11NewTools.cmake │ │ ├── pybind11Tools.cmake │ │ ├── pyproject.toml │ │ ├── setup_global.py.in │ │ └── setup_main.py.in └── win_getopt │ ├── MCELL_INFO.txt │ └── win_getopt.h ├── src ├── COPYING ├── DGMakefile ├── INSTALL ├── Makefile.am ├── README ├── argparse.c ├── argparse.h ├── bng_util.cpp ├── bng_util.h ├── c_vector.cpp ├── c_vector.h ├── chkpt.c ├── chkpt.h ├── config-nix.h ├── config-win.h ├── count_util.c ├── count_util.h ├── data_model_import.py ├── diffuse.c ├── diffuse.h ├── diffuse_trimol.c ├── diffuse_util.c ├── diffuse_util.h ├── dump_state.cpp ├── dyngeom.c ├── dyngeom.h ├── dyngeom_lex.l ├── dyngeom_parse.y ├── dyngeom_parse_extras.c ├── dyngeom_parse_extras.h ├── dyngeom_yacc.h ├── edge_util.c ├── edge_util.h ├── grid_util.c ├── grid_util.h ├── init.c ├── init.h ├── isaac64.c ├── isaac64.h ├── libmcell_test.c ├── logging.c ├── logging.h ├── map_c.cpp ├── map_c.h ├── mcell.c ├── mcell_dyngeom.c ├── mcell_dyngeom.h ├── mcell_dyngeom.i ├── mcell_init.c ├── mcell_init.h ├── mcell_init.i ├── mcell_misc.c ├── mcell_misc.h ├── mcell_misc.i ├── mcell_objects.c ├── mcell_objects.h ├── mcell_objects.i ├── mcell_react_out.c ├── mcell_react_out.h ├── mcell_react_out.i ├── mcell_reactions.c ├── mcell_reactions.h ├── mcell_reactions.i ├── mcell_release.c ├── mcell_release.h ├── mcell_release.i ├── mcell_run.c ├── mcell_run.h ├── mcell_run.i ├── mcell_species.c ├── mcell_species.h ├── mcell_species.i ├── mcell_structs.h ├── mcell_structs.i ├── mcell_structs_shared.h ├── mcell_surfclass.c ├── mcell_surfclass.h ├── mcell_surfclass.i ├── mcell_viz.c ├── mcell_viz.h ├── mcell_viz.i ├── mdllex.l ├── mdlparse.y ├── mdlparse_aux.h ├── mdlparse_util.c ├── mdlparse_util.h ├── mem_util.c ├── mem_util.h ├── minrng.c ├── minrng.h ├── nfsim_func.c ├── nfsim_func.h ├── pymcell.i ├── pymcell_helpers.py ├── pymcell_unittests.py ├── react.h ├── react_cond.c ├── react_nfsim.h ├── react_outc.c ├── react_outc_nfsim.c ├── react_outc_trimol.c ├── react_output.c ├── react_output.h ├── react_trig.c ├── react_trig_nfsim.c ├── react_util.c ├── react_util.h ├── react_util_nfsim.c ├── rng.c ├── rng.h ├── rules_py │ ├── .gitignore │ ├── fceri_files │ │ ├── fceri.mdlr │ │ ├── fceri_ji_comp.geometry.mdl │ │ └── fceri_mdl.viz_output.mdl │ ├── grammar_definition.py │ ├── mcell3r.py │ ├── mdlr2mdl.py │ ├── nfsim_python.py │ ├── postprocess_mcell3r.py │ ├── read_bngxml.py │ ├── read_mdl.py │ ├── small_structures.py │ ├── split_bngxml.py │ ├── write_bngxmle.py │ └── write_mdl.py ├── sched_util.c ├── sched_util.h ├── strfunc.c ├── strfunc.h ├── sym_table.c ├── sym_table.h ├── test_api.c ├── test_api.h ├── triangle_overlap.c ├── triangle_overlap.h ├── util.c ├── util.h ├── vector.c ├── vector.h ├── vector.i ├── version.sh ├── version.txt ├── version_info.c ├── version_info.h ├── viz_output.c ├── viz_output.h ├── vol_util.c ├── vol_util.h ├── volume_output.c ├── volume_output.h ├── wall_util.c ├── wall_util.h └── ylwrapfix ├── src4 ├── CMakeLists.txt ├── base_event.cpp ├── base_event.h ├── bng_data_to_datamodel_converter.cpp ├── bng_data_to_datamodel_converter.h ├── bngl_exporter.cpp ├── bngl_exporter.h ├── clamp_release_event.cpp ├── clamp_release_event.h ├── collision_structs.cpp ├── collision_structs.h ├── collision_utils.inl ├── collision_utils_subparts.inl ├── count_buffer.cpp ├── count_buffer.h ├── custom_function_call_event.h ├── defines.cpp ├── defines.h ├── defragmentation_event.cpp ├── defragmentation_event.h ├── diffuse_react_event.cpp ├── diffuse_react_event.h ├── diffusion_utils.inl ├── dyn_vertex_structs.h ├── dyn_vertex_utils.inl ├── exact_disk_utils.inl ├── geometry.cpp ├── geometry.h ├── geometry_utils.h ├── geometry_utils.inl ├── grid_position.cpp ├── grid_position.h ├── grid_utils.inl ├── mcell3_world_converter.cpp ├── mcell3_world_converter.h ├── mcell4_iface_for_mcell3.cpp ├── mcell4_iface_for_mcell3.h ├── memory_limit_checker.cpp ├── memory_limit_checker.h ├── mol_or_rxn_count_event.cpp ├── mol_or_rxn_count_event.h ├── mol_order_shuffle_event.cpp ├── mol_order_shuffle_event.h ├── molecule.cpp ├── molecule.h ├── partition.cpp ├── partition.h ├── region_expr.cpp ├── region_expr.h ├── region_utils.cpp ├── region_utils.h ├── release_event.cpp ├── release_event.h ├── run_n_iterations_end_event.h ├── rxn_class_cleanup_event.cpp ├── rxn_class_cleanup_event.h ├── rxn_utils.inl ├── scheduler.cpp ├── scheduler.h ├── simulation_config.cpp ├── simulation_config.h ├── simulation_stats.cpp ├── simulation_stats.h ├── sort_mols_by_subpart_event.cpp ├── sort_mols_by_subpart_event.h ├── species_cleanup_event.cpp ├── species_cleanup_event.h ├── viz_output_event.cpp ├── viz_output_event.h ├── vtk_utils.cpp ├── vtk_utils.h ├── wall.cpp ├── wall.h ├── wall_overlap.cpp ├── wall_overlap.h ├── wall_utils.h ├── wall_utils.inl ├── world.cpp └── world.h └── utils ├── CMakeLists.txt ├── blender_debug_scripts └── dyn_vertex_check.py ├── bng_analyzer ├── CMakeLists.txt ├── bng_analyzer.cpp ├── nfsim_species_unifier.cpp ├── nfsim_species_unifier.h └── test │ └── CaMKII.species ├── bng_analyzer_py ├── bng_analysis_example.py └── viz_reader.py ├── bng_species_reader_py ├── bng_species_reader_example.py └── species_reader.py ├── bngl ├── example_inputs │ └── voltage.dat └── generate_bngl_function.py ├── clang-format.conf ├── data_model_to_constants └── datamodel_to_constants.py ├── data_model_to_pymcell ├── CMakeLists.txt ├── bngl_generator.cpp ├── bngl_generator.h ├── data_model_geometry.cpp ├── data_model_geometry.h ├── data_model_to_pymcell.cpp ├── generator_structs.h ├── generator_utils.cpp ├── generator_utils.h ├── mcell4_generator.cpp ├── mcell4_generator.h ├── python_generator.cpp └── python_generator.h ├── hpc_scripts ├── mcell3r_pbs_run_range.py ├── mcell3r_slurm_run_range.py ├── mcell_pbs_run_range.py └── mcell_slurm_run_range.py ├── mcell4_runner ├── bng_runner.py ├── mcell3_runner.py ├── mcell4_runner.py └── 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/libs/jsoncpp/test/data/fail_test_object_01.json: -------------------------------------------------------------------------------- 1 | { "count" : 1234,, } 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_array_01.expected: -------------------------------------------------------------------------------- 1 | .=[] 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_array_01.json: -------------------------------------------------------------------------------- 1 | [] 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_array_02.expected: -------------------------------------------------------------------------------- 1 | .=[] 2 | .[0]=1 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_array_02.json: -------------------------------------------------------------------------------- 1 | [1] 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_array_03.json: -------------------------------------------------------------------------------- 1 | [ 1, 2 , 3,4,5] 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_array_04.json: -------------------------------------------------------------------------------- 1 | [1, "abc" , 12.3, -4] 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_01.expected: -------------------------------------------------------------------------------- 1 | .=123456789 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_01.json: -------------------------------------------------------------------------------- 1 | 0123456789 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_02.expected: -------------------------------------------------------------------------------- 1 | .=-123456789 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_02.json: -------------------------------------------------------------------------------- 1 | -0123456789 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_03.expected: -------------------------------------------------------------------------------- 1 | .=1.2345678 2 | 3 | 4 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_03.json: -------------------------------------------------------------------------------- 1 | 1.2345678 2 | 3 | 4 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_04.expected: -------------------------------------------------------------------------------- 1 | .="abcdef" 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_04.json: -------------------------------------------------------------------------------- 1 | "abcdef" 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_05.expected: -------------------------------------------------------------------------------- 1 | .=null 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_05.json: -------------------------------------------------------------------------------- 1 | null 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_06.expected: -------------------------------------------------------------------------------- 1 | .=true 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_06.json: -------------------------------------------------------------------------------- 1 | true 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_07.expected: -------------------------------------------------------------------------------- 1 | .=false 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_07.json: -------------------------------------------------------------------------------- 1 | false 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_08.expected: -------------------------------------------------------------------------------- 1 | // C++ style comment 2 | .=null 3 | 4 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_08.json: -------------------------------------------------------------------------------- 1 | // C++ style comment 2 | null 3 | 4 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_09.expected: -------------------------------------------------------------------------------- 1 | /* C style comment 2 | */ 3 | .=null 4 | 5 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_basic_09.json: -------------------------------------------------------------------------------- 1 | /* C style comment 2 | */ 3 | null 4 | 5 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_01.expected: -------------------------------------------------------------------------------- 1 | // Max signed integer 2 | .=2147483647 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_01.json: -------------------------------------------------------------------------------- 1 | // Max signed integer 2 | 2147483647 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_02.expected: -------------------------------------------------------------------------------- 1 | // Min signed integer 2 | .=-2147483648 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_02.json: -------------------------------------------------------------------------------- 1 | // Min signed integer 2 | -2147483648 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_03.expected: -------------------------------------------------------------------------------- 1 | // Max unsigned integer 2 | .=4294967295 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_03.json: -------------------------------------------------------------------------------- 1 | // Max unsigned integer 2 | 4294967295 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_04.expected: -------------------------------------------------------------------------------- 1 | // Min unsigned integer 2 | .=0 3 | 4 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_04.json: -------------------------------------------------------------------------------- 1 | // Min unsigned integer 2 | 0 3 | 4 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_05.expected: -------------------------------------------------------------------------------- 1 | .=1 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_05.json: -------------------------------------------------------------------------------- 1 | 1 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_06_64bits.expected: -------------------------------------------------------------------------------- 1 | .=9223372036854775808 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_06_64bits.json: -------------------------------------------------------------------------------- 1 | 9223372036854775808 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_07_64bits.expected: -------------------------------------------------------------------------------- 1 | .=-9223372036854775808 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_07_64bits.json: -------------------------------------------------------------------------------- 1 | -9223372036854775808 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_08_64bits.expected: -------------------------------------------------------------------------------- 1 | .=18446744073709551615 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_integer_08_64bits.json: -------------------------------------------------------------------------------- 1 | 18446744073709551615 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_object_01.expected: -------------------------------------------------------------------------------- 1 | .={} 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_object_01.json: -------------------------------------------------------------------------------- 1 | {} 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_object_02.expected: -------------------------------------------------------------------------------- 1 | .={} 2 | .count=1234 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_object_02.json: -------------------------------------------------------------------------------- 1 | { "count" : 1234 } 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_object_04.expected: -------------------------------------------------------------------------------- 1 | .={} 2 | .=1234 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_object_04.json: -------------------------------------------------------------------------------- 1 | { 2 | "" : 1234 3 | } 4 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_real_12.expected: -------------------------------------------------------------------------------- 1 | // 2^64 -> switch to double. 2 | .=1.844674407370955e+19 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_real_12.json: -------------------------------------------------------------------------------- 1 | // 2^64 -> switch to double. 2 | 18446744073709551616 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_03.expected: -------------------------------------------------------------------------------- 1 | .="http://jsoncpp.sourceforge.net/" -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_03.json: -------------------------------------------------------------------------------- 1 | "http:\/\/jsoncpp.sourceforge.net\/" 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_04.expected: -------------------------------------------------------------------------------- 1 | .=""abc\def"" 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_04.json: -------------------------------------------------------------------------------- 1 | "\"abc\\def\"" 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_01.expected: -------------------------------------------------------------------------------- 1 | .="a" 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_01.json: -------------------------------------------------------------------------------- 1 | "\u0061" -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_02.expected: -------------------------------------------------------------------------------- 1 | .="¢" 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_02.json: -------------------------------------------------------------------------------- 1 | "\u00A2" -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_03.expected: -------------------------------------------------------------------------------- 1 | .="€" 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_03.json: -------------------------------------------------------------------------------- 1 | "\u20AC" -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_04.expected: -------------------------------------------------------------------------------- 1 | .="𝄞" 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_04.json: -------------------------------------------------------------------------------- 1 | "\uD834\uDD1E" -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_05.expected: -------------------------------------------------------------------------------- 1 | .="Zażółć gęślą jaźń" 2 | 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/legacy_test_string_unicode_05.json: -------------------------------------------------------------------------------- 1 | "Zażółć gęślą jaźń" -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/test_array_08.expected: -------------------------------------------------------------------------------- 1 | .=[] 2 | .[0]=1 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/test_array_08.json: -------------------------------------------------------------------------------- 1 | [1,] 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/test_object_05.expected: -------------------------------------------------------------------------------- 1 | .={} 2 | .count=1234 3 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/data/test_object_05.json: -------------------------------------------------------------------------------- 1 | { "count" : 1234, } 2 | -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail1.json: -------------------------------------------------------------------------------- 1 | "A JSON payload should be an object or array, not a string." -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail11.json: -------------------------------------------------------------------------------- 1 | {"Illegal expression": 1 + 2} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail12.json: -------------------------------------------------------------------------------- 1 | {"Illegal invocation": alert()} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail13.json: -------------------------------------------------------------------------------- 1 | {"Numbers cannot have leading zeroes": 013} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail14.json: -------------------------------------------------------------------------------- 1 | {"Numbers cannot be hex": 0x14} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail15.json: -------------------------------------------------------------------------------- 1 | ["Illegal backslash escape: \x15"] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail16.json: -------------------------------------------------------------------------------- 1 | [\naked] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail17.json: -------------------------------------------------------------------------------- 1 | ["Illegal backslash escape: \017"] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail19.json: -------------------------------------------------------------------------------- 1 | {"Missing colon" null} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail2.json: -------------------------------------------------------------------------------- 1 | ["Unclosed array" -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail20.json: -------------------------------------------------------------------------------- 1 | {"Double colon":: null} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail21.json: -------------------------------------------------------------------------------- 1 | {"Comma instead of colon", null} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail22.json: -------------------------------------------------------------------------------- 1 | ["Colon instead of comma": false] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail23.json: -------------------------------------------------------------------------------- 1 | ["Bad value", truth] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail24.json: -------------------------------------------------------------------------------- 1 | ['single quote'] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail25.json: -------------------------------------------------------------------------------- 1 | [" tab character in string "] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail27.json: -------------------------------------------------------------------------------- 1 | ["line 2 | break"] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail28.json: -------------------------------------------------------------------------------- 1 | ["line\ 2 | break"] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail29.json: -------------------------------------------------------------------------------- 1 | [0e] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail30.json: -------------------------------------------------------------------------------- 1 | [0e+] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail31.json: -------------------------------------------------------------------------------- 1 | [0e+-1] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail32.json: -------------------------------------------------------------------------------- 1 | {"Comma instead if closing brace": true, -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail33.json: -------------------------------------------------------------------------------- 1 | ["mismatch"} -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail4.json: -------------------------------------------------------------------------------- 1 | ["extra comma",] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail5.json: -------------------------------------------------------------------------------- 1 | ["double extra comma",,] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail6.json: -------------------------------------------------------------------------------- 1 | [ , "<-- missing value"] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail7.json: -------------------------------------------------------------------------------- 1 | ["Comma after the close"], -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail8.json: -------------------------------------------------------------------------------- 1 | ["Extra close"]] -------------------------------------------------------------------------------- /libs/jsoncpp/test/jsonchecker/fail9.json: 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