├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── SummaryReport.R ├── archive │ └── cervical.R ├── calibSim.R ├── plugin.R ├── pqueue.R ├── rcpp_hello_world.R ├── simulate.R └── zzz.R ├── README.org ├── clean.sh ├── data └── fhcrcData.rda ├── inst ├── develop_to_master.sh ├── doc │ ├── examples.html │ ├── examples.org │ ├── illness_death.png │ ├── index.html │ ├── index.org │ ├── rates.png │ ├── reporting.png │ └── tick_tock.png ├── include │ ├── RngStream.cpp │ ├── RngStream.h │ ├── c_optim.h │ ├── gsm.h │ ├── heap.h │ ├── microsimulation.h │ ├── rcpp_table.h │ ├── siena │ │ └── ssim.h │ ├── splines.h │ └── ssim.cc └── lib │ └── keeplib.txt ├── man ├── Classes.Rd ├── Data.Rd ├── Examples.Rd ├── Internal.Rd ├── MVK.Rd ├── RNGStream.Rd ├── SummaryReport.Rd ├── Utilities.Rd ├── discountedInterval.Rd ├── microsimulation-package.Rd └── simulate.Rd ├── microsimulation.Rproj ├── src ├── Makevars ├── Makevars.win ├── RngStream.cpp ├── archive │ ├── cervical.cpp │ └── person-r-20121231.cc ├── calibperson-r.cc ├── doc │ ├── Doxyfile │ ├── Makefile │ ├── fdl.txt │ ├── footer.html │ ├── header.html │ └── maindoc.h ├── gsm.cpp ├── illness-death.cpp ├── init.c ├── microsimulation.cc ├── person-r.cc ├── pqueue.cpp ├── rngstream-boost.hpp ├── rngstream-example.cpp ├── simple-example.cc ├── simple-example2.cc ├── splines.cpp └── ssim.cc ├── test ├── Rcpp-tests.R ├── RngStream-revised.cpp ├── RngStream-revised.h ├── TODO.org ├── cluster.sh ├── cluster_mic.R ├── rescreen.R ├── rngstream-c++-example.cpp ├── rngstream-c++11.hpp ├── submit_cluster.sh └── test_microsimulation.R └── tests ├── testthat.R └── testthat ├── test-callIllnessDeath.R └── test-callPersonSimulation2.R /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mclements/microsimulation/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: 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