├── .github └── workflows │ ├── docs.yml │ └── qc.yml ├── .gitignore ├── LICENSE.txt ├── README.md ├── docs ├── DronReleaseWorkflow.md ├── MigrationNotes.md ├── cite.md ├── contributing.md ├── highest-id-by-release.md ├── history.md ├── img │ ├── AddingClasses.png │ └── inferred_subs.png ├── index.md ├── odk-workflows │ ├── ContinuousIntegration.md │ ├── EditorsWorkflow.md │ ├── ManageDocumentation.md │ ├── ReleaseWorkflow.md │ ├── RepoManagement.md │ ├── RepositoryFileStructure.md │ ├── SettingUpDockerForODK.md │ ├── UpdateImports.md │ ├── components.md │ └── index.md └── release-counts.md ├── mkdocs.yaml ├── patterns ├── definitions.owl └── pattern.owl └── src ├── metadata ├── README.md ├── dron.md └── dron.yml ├── ontology ├── Makefile ├── README-editors.md ├── catalog-v001.xml ├── config │ └── rename.tsv ├── dron-edit.owl ├── dron-idranges.owl ├── dron-odk.yaml ├── dron.Makefile ├── imports │ ├── apollo_sv_import.owl │ ├── apollo_sv_terms.txt │ ├── bfo_import.owl │ ├── bfo_terms.txt │ ├── chebi_import.owl │ ├── chebi_terms.txt │ ├── external_import.owl │ ├── go_import.owl │ ├── go_terms.txt │ ├── iao_import.owl │ ├── iao_terms.txt │ ├── obi_import.owl │ ├── obi_terms.txt │ ├── ogms_import.owl │ ├── ogms_terms.txt │ ├── omo_import.owl │ ├── omo_terms.txt │ ├── pato_import.owl │ ├── pato_terms.txt │ ├── pr_import.owl │ ├── pr_terms.txt │ ├── ro_import.owl │ ├── ro_terms.txt │ ├── uo_import.owl │ └── uo_terms.txt ├── mappings │ └── dron-chebi-mapping.csv ├── run.bat └── run.sh ├── scripts ├── collect-chebi-labels.sql ├── convert-dron-ldtab.sql ├── convert-ldtab-dron.sql ├── create-dron-tables.sql ├── create-rxnorm-tables.sql ├── fetch-rxnorm.sh ├── find-highest-obo-id-single-file.sh ├── find-highest-obo-id.sh ├── index-dron-tables.sql ├── index-rxnorm-tables.sql ├── load-dron-tables.sql ├── load-rxnorm-tables.sql ├── obsolete-dron-duplicates.sh ├── obsolete-dron-duplicates.sql ├── obsolete-dron-ingredients.sh ├── obsolete-dron-ingredients.sql ├── obsolete-terms.sh ├── obsolete-terms.sql ├── oldcatalog ├── prefix.tsv ├── report-problems.sql ├── run-command.sh ├── save-dron-tables.sql ├── update-dron-from-rxnorm.sql ├── update-labels.sql ├── update_repo.sh └── validate_id_ranges.sc ├── sparql ├── README.md ├── basic-report.sparql ├── class-count-by-prefix.sparql ├── dc-properties-violation.sparql ├── def-lacks-xref-violation.sparql ├── dron-classes-same-label-same-rxcui.sparql ├── dron-ingredient.sparql ├── dron-ndc.sparql ├── dron-rxnorm.sparql ├── dron_terms.sparql ├── edges.sparql ├── equivalent-classes-violation.sparql ├── inject-subset-declaration.ru ├── inject-synonymtype-declaration.ru ├── iri-range-violation.sparql ├── label-with-iri-violation.sparql ├── labels.sparql ├── multiple-replaced_by-violation.sparql ├── nolabels-violation.sparql ├── obsolete-violation.sparql ├── obsoletes.sparql ├── owldef-self-reference-violation.sparql ├── owldef-violation.sparql ├── postprocess-module.ru ├── preprocess-module.ru ├── redundant-subClassOf-violation.sparql ├── simple-seed.sparql ├── subsets-labeled.sparql ├── synonyms.sparql ├── terms.sparql └── xrefs.sparql └── templates ├── branded_drug.tsv ├── branded_drug_excipient.tsv ├── clinical_drug.tsv ├── clinical_drug_form.tsv ├── clinical_drug_form_disposition.tsv ├── clinical_drug_form_ingredient.tsv ├── clinical_drug_strength.tsv ├── disposition.tsv ├── dose_form.tsv ├── external_import.tsv ├── ingredient.tsv ├── ingredient_disposition.tsv ├── ndc_branded_drug.tsv ├── ndc_clinical_drug.tsv ├── obsolete.tsv ├── rxcui.tsv └── unit.tsv /.github/workflows/docs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mcwdsi/dron/HEAD/.github/workflows/docs.yml -------------------------------------------------------------------------------- /.github/workflows/qc.yml: -------------------------------------------------------------------------------- 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