├── .github ├── CIVMBanner.png ├── classifier_results.png ├── cnn_structure.png ├── multi_contrast.png └── segmentations.png ├── Crawler ├── crawler.py ├── crawler_radiomics.py ├── crawler_segmentation.py ├── data_management.py ├── montage_ppt.py └── utilities.py ├── LICENSE ├── README.md ├── Radiomics ├── Nifti_float_to_16bit.py ├── compare_animal_changes.py ├── compute_radiomic_maps.py ├── radiomic_calculations_batch.py ├── radiomic_functions.py ├── radiomic_map_visualization.py └── radiomics_classifications.py ├── Segmentation ├── Segmentation.py ├── eval_performance.py ├── load_datasets.py ├── model_keras.py └── sample_n4_correction.py ├── Utilities ├── nifti_to_dicom.py ├── overlay_ims.py ├── remove_empty_results.py └── show_segmentations.py └── requirements.txt /.github/CIVMBanner.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdholbrook/MRI_Segmentation_Radiomics/HEAD/.github/CIVMBanner.png 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