├── .github └── workflows │ ├── deploy.yml │ └── tests.yml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── LICENSE ├── README.md ├── __init__.py ├── docs ├── Makefile ├── conf.py ├── index.rst └── requirements.txt ├── scripts └── pileup.py ├── setup.cfg ├── setup.py └── simplesam.py /.github/workflows/deploy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/.github/workflows/deploy.yml -------------------------------------------------------------------------------- /.github/workflows/tests.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/.github/workflows/tests.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/.gitignore -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/docs/conf.py -------------------------------------------------------------------------------- /docs/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/docs/index.rst -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- 1 | simplesam 2 | -------------------------------------------------------------------------------- /scripts/pileup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/scripts/pileup.py -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/setup.py -------------------------------------------------------------------------------- /simplesam.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mdshw5/simplesam/HEAD/simplesam.py --------------------------------------------------------------------------------