├── 3DSAM-adapter ├── README.md ├── dataset │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ ├── base_dataset.cpython-39.pyc │ │ └── datasets.cpython-39.pyc │ ├── base_dataset.py │ └── datasets.py ├── modeling │ ├── image_encoder.py │ ├── mask_decoder.py │ └── prompt_encoder.py ├── test.py ├── test_auto.py ├── train.py ├── train_auto.py └── utils │ ├── __pycache__ │ ├── script_util.cpython-39.pyc │ └── util.cpython-39.pyc │ ├── model_util.py │ ├── script_util.py │ └── util.py ├── README.md ├── asset ├── datasets.png ├── result.png └── teaser.png ├── baselines ├── README.md ├── dataset │ ├── __init__.py │ ├── base_dataset.py │ └── datasets.py ├── modeling │ ├── TransBTS │ │ ├── IntmdSequential.py │ │ ├── PositionalEncoding.py │ │ ├── README.md │ │ ├── TransBTS │ │ │ └── TransBTS_downsample8x_skipconnection.py │ │ ├── TransBTS_downsample8x_skipconnection.py │ │ ├── Transformer.py │ │ ├── Unet_skipconnection.py │ │ └── __pycache__ │ │ │ ├── IntmdSequential.cpython-38.pyc │ │ │ ├── PositionalEncoding.cpython-38.pyc │ │ │ ├── TransBTS_downsample8x_skipconnection.cpython-38.pyc │ │ │ ├── Transformer.cpython-38.pyc │ │ │ └── Unet_skipconnection.cpython-38.pyc │ ├── basic_unet.py │ ├── nnFormer │ │ ├── __init__.py │ │ ├── generic_UNet.py │ │ ├── initialization.py │ │ ├── neural_network.py │ │ ├── nnFormer_acdc.py │ │ ├── nnFormer_seg.py │ │ ├── nnFormer_tumor.py │ │ └── utilities │ │ │ ├── __init__.py │ │ │ ├── nd_softmax.py │ │ │ ├── random_stuff.py │ │ │ └── to_torch.py │ ├── unetr.py │ ├── unetr_pp │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── dynunet_block.cpython-38.pyc │ │ │ ├── layers.cpython-38.pyc │ │ │ ├── model_components.cpython-38.pyc │ │ │ ├── neural_network.cpython-38.pyc │ │ │ ├── transformerblock.cpython-38.pyc │ │ │ └── unetr_pp.cpython-38.pyc │ │ ├── dynunet_block.py │ │ ├── generic_UNet.py │ │ ├── initialization.py │ │ ├── layers.py │ │ ├── model_components.py │ │ ├── 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