├── ArterialTree.py ├── Data ├── P1_whole_brain_BraVa.swc ├── example_centerline_ICA.swc ├── example_centerline_ICA_edg.txt ├── example_centerline_ICA_nds.txt ├── ideal_model.txt └── straight_tube.swc ├── Documentation ├── ICA.png ├── abstract.png ├── class_diagram.png ├── demo_software_angle_x2.mp4 ├── demo_software_editionx2.mp4 ├── graph_representation.png ├── ideal.png ├── mesh_stenosis.png ├── simulation.png └── whole_brain.png ├── Editor.py ├── Install ├── launcher.sh ├── meshing.yml └── module_check.py ├── LICENSE ├── Model.py ├── Nfurcation.py ├── Others └── segmentation_to_centerlines.py ├── Output ├── OpenFoam │ ├── 0 │ │ ├── U │ │ └── p │ └── constant │ │ └── polyMesh │ │ ├── boundary │ │ ├── faces │ │ ├── neighbour │ │ ├── owner │ │ └── points ├── bifurcation_mesh.vtk ├── surface_mesh.vtk ├── surface_mesh_closed.vtk ├── surface_mesh_ideal_model.vtk ├── surface_mesh_stenosis.vtk └── volume_mesh.vtk ├── README.md ├── Simulation.py ├── Spline.py ├── main.py ├── pathology_templates └── default │ ├── crsec_000.txt │ ├── crsec_001.txt │ ├── crsec_002.txt │ ├── crsec_003.txt │ ├── crsec_004.txt │ ├── crsec_005.txt │ ├── crsec_006.txt │ ├── crsec_007.txt │ ├── crsec_008.txt │ ├── crsec_009.txt │ └── info.txt └── utils.py /ArterialTree.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/megdec/vascularmd/HEAD/ArterialTree.py -------------------------------------------------------------------------------- /Data/P1_whole_brain_BraVa.swc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/megdec/vascularmd/HEAD/Data/P1_whole_brain_BraVa.swc -------------------------------------------------------------------------------- /Data/example_centerline_ICA.swc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/megdec/vascularmd/HEAD/Data/example_centerline_ICA.swc 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