├── .gitignore ├── README.md ├── docker ├── Dockerfile.cpu └── README.md ├── fit.py ├── prostatesegmenter ├── __init__.py ├── data.py ├── data │ ├── mean_train.npy │ └── test │ │ ├── Case1-t2ax-intraop.nrrd │ │ ├── Case1-t2ax-intraop_label.nrrd │ │ └── README.md ├── model.py ├── nets │ ├── __init__.py │ └── unet1.py ├── segmenter.py └── utils.py └── test.sh /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Prostate-Segmenter 2 | -------------------------------------------------------------------------------- /docker/Dockerfile.cpu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/docker/Dockerfile.cpu -------------------------------------------------------------------------------- /docker/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/docker/README.md -------------------------------------------------------------------------------- /fit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/fit.py -------------------------------------------------------------------------------- /prostatesegmenter/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /prostatesegmenter/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/data.py -------------------------------------------------------------------------------- /prostatesegmenter/data/mean_train.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/data/mean_train.npy -------------------------------------------------------------------------------- /prostatesegmenter/data/test/Case1-t2ax-intraop.nrrd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/data/test/Case1-t2ax-intraop.nrrd -------------------------------------------------------------------------------- /prostatesegmenter/data/test/Case1-t2ax-intraop_label.nrrd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/data/test/Case1-t2ax-intraop_label.nrrd -------------------------------------------------------------------------------- /prostatesegmenter/data/test/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/data/test/README.md -------------------------------------------------------------------------------- /prostatesegmenter/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/model.py -------------------------------------------------------------------------------- /prostatesegmenter/nets/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /prostatesegmenter/nets/unet1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/nets/unet1.py -------------------------------------------------------------------------------- /prostatesegmenter/segmenter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/segmenter.py -------------------------------------------------------------------------------- /prostatesegmenter/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/prostatesegmenter/utils.py -------------------------------------------------------------------------------- /test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mehrtash/Prostate-Segmenter/HEAD/test.sh --------------------------------------------------------------------------------