├── .gitignore ├── LICENSE ├── README.md ├── casename_files ├── oai-zib │ ├── test_cases.txt │ └── train_cases.txt └── verse19 │ ├── readme.txt │ ├── test_cases.txt │ └── train_cases.txt ├── config_files ├── inference │ ├── eval_config_femur_ad_orth_slices.yml │ ├── eval_config_femur_ad_paral_slices.yml │ ├── eval_config_femur_rn.yml │ ├── eval_config_verse_ad_orth_slices.yml │ ├── eval_config_verse_ad_paral_slices.yml │ └── eval_config_verse_rn.yml └── training │ ├── train_config_femur_thick_ad.yml │ ├── train_config_femur_thick_rn.yml │ ├── train_config_femur_thin_ad.yml │ ├── train_config_femur_thin_rn.yml │ ├── train_config_verse_thick_ad.yml │ ├── train_config_verse_thick_rn.yml │ ├── train_config_verse_thin_ad.yml │ └── train_config_verse_thin_rn.yml ├── eval_config_default.yml ├── figures ├── oai.png ├── teaser.png └── verse.png ├── impl_recon ├── __init__.py ├── eval.py ├── models │ ├── __init__.py │ └── implicits.py ├── tests │ ├── __init__.py │ ├── test_data_generation.py │ └── test_geometry_utils.py ├── train.py └── utils │ ├── __init__.py │ ├── config_io.py │ ├── data_generation.py │ ├── geometry_utils.py │ ├── image_utils.py │ ├── impl_utils.py │ ├── io_utils.py │ ├── nn_utils.py │ └── patch_utils.py ├── paths_config_default.yml ├── preprocessing └── extract_vertebra.py ├── requirements-dev.txt ├── requirements.txt ├── setup.cfg ├── surface_distance ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── __init__.py ├── lookup_tables.py ├── metrics.py └── tests │ ├── __init__.py │ └── test_metrics.py ├── train_config_default.yml └── training_plots.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/menzelab/implicit-shape-reconstruction/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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