├── .gitignore ├── README.md ├── bpline.py ├── docs ├── COPYING └── metagenomics_pipeline.py ├── pipeline ├── __init__.py ├── classes │ ├── __init__.py │ ├── blastfilter.py │ ├── config.py │ ├── constants.py │ └── filter.py ├── modules │ ├── README.md │ ├── __init__.py │ ├── mod_blast.py │ ├── mod_usearch.py │ └── mod_usearch6.py └── utils │ ├── __init__.py │ ├── b6lib.py │ ├── cmdlinehandler.py │ ├── fastalib.py │ ├── logger.py │ └── utils.py └── samples ├── sample-filters-config.ini ├── sample.b6.txt ├── sample.b6.txt.png ├── sample.fa ├── sample.fa.png └── sample_userch_db.wdb /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/meren/BLAST-filtering-pipeline/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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