├── .gitignore ├── .travis.yml ├── AUTHORS ├── CMake └── Modules │ ├── FindEigen.cmake │ ├── FindLibMeshb.cmake │ ├── FindMetis.cmake │ └── FindNuma.cmake ├── CMakeLists.txt ├── Doxyfile ├── LICENSE ├── README.md ├── codegen ├── fit_ellipsoid_3d.py └── generate_Steiner_ellipse_3d.py ├── debian ├── changelog ├── compat ├── control ├── copyright ├── dirs └── rules ├── docs ├── bibliography.bib ├── error_metrics.tex ├── images │ ├── EdgeFaceNodeMove.pdf │ ├── EdgeSplitCollapse.pdf │ ├── MergedMetrics.pdf │ ├── MeshOperations2D.pdf │ ├── Transformed_Elements.pdf │ └── edge2edge.pdf ├── install_omega_h.sh ├── interpolation.tex ├── introduction.tex ├── low_level_interface.tex ├── notation.tex ├── overview.tex ├── pragmatic.tex ├── presentation │ ├── Makefile │ ├── NUMA.pdf │ ├── SPARC64_VIIIfx.pdf │ ├── adapt_shock.png │ ├── bandwidth.pdf │ ├── pragmatic_slides.py │ └── westmere.pdf └── primer.tex ├── include ├── Coarsen.h ├── DeferredOperations.h ├── Edge.h ├── ElementProperty.h ├── GMFTools.h ├── HaloExchange.h ├── Mesh.h ├── MetricField.h ├── MetricTensor.h ├── PragmaticTypes.h ├── Refine.h ├── Smooth.h ├── Swapping.h ├── VTKTools.h ├── cpragmatic.h ├── generate_Steiner_ellipse_3d.h ├── mpi_tools.h ├── pragmatic.h └── ticker.h ├── python ├── adaptivity.py.in ├── adv_convergence.py ├── ellipse_convergence.py ├── inlet_example3D.py ├── maximal_example.py ├── mesh_metric2_example.py ├── minimal_example.py ├── minimal_example3D.py ├── minimal_example_minell.py ├── play_multigrid.py └── tests │ ├── test_adapt.py │ ├── test_detect_colinearity.py │ └── test_mesh_metric.py ├── src ├── cpragmatic.cpp ├── generate_Steiner_ellipse_3d.cpp ├── mpi_tools.cpp └── ticker.cpp ├── tests ├── CMakeLists.txt ├── benchmark-analysis.py ├── benchmark.sh ├── bin │ └── .gitignore ├── data │ ├── antarctic.vtu │ ├── ball.meshb │ ├── bearskull.vtu │ ├── box10x10.vtu │ ├── box10x10x10.vtu │ ├── box200x200.vtu │ ├── box20x20.vtu │ ├── box20x20x20.vtu │ ├── box50x50.vtu │ ├── box50x50x50.vtu │ ├── box5x5.vtu │ ├── box5x5x5.vtu │ ├── coarse_slab0003.vtu │ ├── cube-cylinder.meshb │ ├── cube-linear-00.meshb │ ├── cube.vtu │ ├── cube20x20x20.meshb │ ├── disc.meshb │ ├── doughnut.xml │ ├── doughnut_facets.xml │ ├── mesh2d.meshb │ ├── mesh2d.solb │ ├── mesh3d.meshb │ ├── mesh3d.solb │ ├── metric.xml │ ├── small_bidomain_slab.vtu │ ├── smooth_2d.vtu │ ├── square50x50.meshb │ ├── square5x5.meshb │ └── tohoku.meshb ├── run_benchmarks.py ├── src │ ├── benchmark_adapt_2d.cpp │ ├── benchmark_adapt_3d.cpp │ ├── benchmark_set.cpp │ ├── test_ElementProperty.cpp │ ├── test_adapt_2d.cpp │ ├── test_adapt_2d.mpi │ ├── test_adapt_3d.cpp │ ├── test_ballincube.cpp │ ├── test_coarsen_2d.cpp │ ├── test_coarsen_3d.cpp │ ├── test_coarsen_boundary_2d.cpp │ ├── test_coarsen_boundary_3d.cpp │ ├── test_discinsquare.cpp │ ├── test_eigen.cpp │ ├── test_generate_Steiner_ellipse_3d.cpp │ ├── test_gmf.cpp │ ├── test_gradation_3d.cpp │ ├── test_hessian_2d.cpp │ ├── test_hessian_3d.cpp │ ├── test_int_regions_2d.cpp │ ├── test_int_regions_3d.cpp │ ├── test_mpi_adapt_3d.cpp │ ├── test_mpi_adapt_3d.mpi │ ├── test_mpi_coarsen_2d.cpp │ ├── test_mpi_coarsen_2d.mpi │ ├── test_mpi_coarsen_3d.cpp │ ├── test_mpi_coarsen_3d.mpi │ ├── test_mpi_refine_2d.cpp │ ├── test_mpi_refine_2d.mpi │ ├── test_mpi_refine_3d.cpp │ ├── test_mpi_refine_3d.mpi │ ├── test_refine_2d.cpp │ ├── test_refine_3d.cpp │ ├── test_refine_unstructured_2d.cpp │ ├── test_refine_unstructured_3d.cpp │ ├── test_smooth_2d.cpp │ ├── test_smooth_2d.mpi │ ├── test_smooth_3d.cpp │ ├── test_smooth_3d.mpi │ ├── test_swap_2d.cpp │ ├── test_tohoku.cpp │ ├── test_ugawg_cube.cpp │ └── test_uniform_adapt_2d.cpp ├── tools │ └── jpeg2vtu.py └── unittest └── tools ├── coarsen_mesh_3d.cpp ├── jpeg2mesh.cpp ├── mesh2vtu.cpp ├── tecplot2mesh.cpp └── vtu2mesh.cpp /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/meshadaptation/pragmatic/HEAD/.gitignore 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