├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── VStrains_logo.png ├── environment.yml ├── evals ├── quast_evaluation.py └── sampling.py ├── recipe └── meta.yaml ├── requirements.txt ├── setup.py ├── utils ├── VStrains_Alignment.py ├── VStrains_Decomposition.py ├── VStrains_Extension.py ├── VStrains_IO.py ├── VStrains_PE_Inference.py ├── VStrains_Preprocess.py ├── VStrains_SPAdes.py ├── VStrains_Utilities.py ├── __init__.py └── spades_wrapper.py └── vstrains /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/metagentools/VStrains/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/metagentools/VStrains/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: 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