├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── NAMESPACE ├── R ├── DHessDrho.stand.R ├── DHessDrho_linpreds.R ├── DHessDrho_mgks.R ├── DHessDrho_nexpsm.R ├── DHessDrho_si.R ├── DllkDbeta.stand.R ├── DllkDbeta_linpreds.R ├── DllkDbeta_nested.R ├── DllkDbeta_si.R ├── DllkDmu_to_DllkDeta.R ├── I_DhDr.R ├── I_Hess.R ├── I_Ppen.R ├── I_build_effects.R ├── I_build_nested_pspline_basis.R ├── I_compile_formula.R ├── I_contract2.R ├── I_contract3_vect.R ├── I_create_subset_llk.R ├── I_diagPen.R ├── I_eval_penalties.R ├── I_eval_ridge_penalties.R ├── I_getBmatrix.R ├── I_get_eff_eval_general.R ├── I_get_jacobian_nested.R ├── I_my_smooth_construct_bs_smooth_spec.R ├── I_pen_var_gen.R ├── I_pen_var_si.R ├── I_predict_matrix_mgks.R ├── I_predict_matrix_nexpsm.R ├── I_predict_matrix_si.R ├── I_psp.R ├── I_resid_exp_fam.R ├── I_sumChi2.R ├── I_vec_to_sym_mat.R ├── I_wrap_nested_basis.R ├── Predict.matrix.nested.R ├── RcppExports.R ├── basis_bspline.R ├── build_family.R ├── build_family_nl.R ├── bundle_binomial.R ├── bundle_gaussian.R ├── bundle_gpd.R ├── bundle_poisson.R ├── bundle_shash.R ├── check_deriv.R ├── check_deriv_auto.R ├── chicago_data.R ├── eff_mgks.R ├── eff_nexpsm.R ├── eff_si.R ├── eff_stand.R ├── expsmooth.R ├── fam_binomial.R ├── fam_gaussian.R ├── fam_gpd.R ├── fam_poisson.R ├── fam_shash.R ├── fam_stackProb.R ├── fix_family_link.R ├── gamFactory.R ├── gam_nl.R ├── generic_functions.R ├── linextr.R ├── linpreds.R ├── llk_binomial.R ├── llk_gaussian.R ├── llk_gpd.R ├── llk_poisson.R ├── llk_shash.R ├── llk_test.R ├── make_link.R ├── mgks.R ├── pen_var.R ├── penreg.R ├── postproc_gam_nl.R ├── predict.gamnl.R ├── prep_info.R ├── prepare_link.R ├── s_nest.R ├── smooth_construct_mgks_smooth_spec.R ├── smooth_construct_nexpsm_smooth_spec.R ├── smooth_construct_si_smooth_spec.R ├── summary_gamnl.R ├── symmat2vec.R ├── trans_xxx.R └── wrap_der_fun.R ├── README.md ├── appveyor.yml ├── gamFactory_files ├── figure-gfm │ ├── unnamed-chunk-11-1.png │ ├── unnamed-chunk-15-1.png │ ├── unnamed-chunk-16-1.png │ ├── unnamed-chunk-7-1.png │ └── unnamed-chunk-8-1.png ├── figure-html │ ├── gamFactory-10-1.png │ ├── gamFactory-11-1.png │ ├── gamFactory-17-1.png │ ├── gamFactory-18-1.png │ ├── gamFactory-19-1.png │ ├── gamFactory-23-1.png │ ├── gamFactory-24-1.png │ ├── gamFactory-26-1.png │ ├── gamFactory-28-1.png │ ├── gamFactory-29-1.png │ ├── gamFactory-36-1.png │ ├── gamFactory-37-1.png │ ├── gamFactory-40-1.png │ ├── gamFactory-44-1.png │ ├── gamFactory-45-1.png │ ├── gamFactory-5-1.png │ └── gamFactory-9-1.png ├── figure-latex │ ├── gamFactory-10-1.pdf │ ├── gamFactory-11-1.pdf │ ├── gamFactory-17-1.pdf │ ├── gamFactory-18-1.pdf │ ├── gamFactory-19-1.pdf │ ├── gamFactory-23-1.pdf │ ├── gamFactory-24-1.pdf │ ├── gamFactory-26-1.pdf │ ├── gamFactory-28-1.pdf │ ├── gamFactory-29-1.pdf │ ├── gamFactory-36-1.pdf │ ├── gamFactory-37-1.pdf │ ├── gamFactory-40-1.pdf │ ├── gamFactory-44-1.pdf │ ├── gamFactory-45-1.pdf │ ├── gamFactory-5-1.pdf │ └── gamFactory-9-1.pdf ├── figure-markdown_github │ ├── unnamed-chunk-11-1.png │ ├── unnamed-chunk-15-1.png │ ├── unnamed-chunk-16-1.png │ ├── unnamed-chunk-7-1.png │ └── unnamed-chunk-8-1.png └── figure-markdown_strict │ ├── gamFactory-10-1.png │ ├── gamFactory-11-1.png │ ├── gamFactory-5-1.png │ └── gamFactory-9-1.png ├── man ├── DHessDrho.Rd ├── DHessDrho.easy.Rd ├── DHessDrho.linpreds.Rd ├── DHessDrho.mgks.Rd ├── DHessDrho.nexpsm.Rd ├── DHessDrho.si.Rd ├── DHessDrho.stand.Rd ├── DllkDbeta.Rd ├── DllkDbeta.linpreds.Rd ├── DllkDbeta.nested.Rd ├── DllkDbeta.si.Rd ├── DllkDbeta.stand.Rd ├── Predict.matrix.nested.Rd ├── basis_bspline.Rd ├── build_family.Rd ├── build_family_nl.Rd ├── bundle_binomial.Rd ├── bundle_gaussian.Rd ├── bundle_gpd.Rd ├── bundle_poisson.Rd ├── bundle_shash.Rd ├── check_deriv.Rd ├── check_deriv_auto.Rd ├── chicago_data.Rd ├── eff_mgks.Rd ├── eff_nexpsm.Rd ├── eff_si.Rd ├── eff_stand.Rd ├── expsmooth.Rd ├── fam_binomial.Rd ├── fam_gaussian.Rd ├── fam_gpd.Rd ├── fam_poisson.Rd ├── fam_shash.Rd ├── fam_stackProb.Rd ├── fix_family_link.Rd ├── gamFactory.Rd ├── gam_nl.Rd ├── linextr.Rd ├── linpreds.Rd ├── llk_binomial.Rd ├── llk_gaussian.Rd ├── llk_gpd.Rd ├── llk_poisson.Rd ├── llk_shash.Rd ├── llk_test.Rd ├── make_link.Rd ├── mgks.Rd ├── pen_var.Rd ├── penreg.Rd ├── postproc_gam_nl.Rd ├── predict.gamnl.Rd ├── prep_info.Rd ├── prepare_link.Rd ├── s_nest.Rd ├── smooth.construct.mgks.smooth.spec.Rd ├── smooth.construct.nexpsm.smooth.spec.Rd ├── smooth.construct.si.smooth.spec.Rd ├── summary.Rd ├── symmat2vec.Rd ├── trans_xxx.Rd └── wrap_der_fun.Rd ├── src ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── expsmooth.cpp └── mgks.cpp └── vignettes ├── .gitignore ├── gamFactory.md └── gamFactory.rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mfasiolo/gamFactory/HEAD/.Rbuildignore 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