├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── RcppExports.R ├── genNullSeqs.R ├── gkmsvm_classify.R ├── gkmsvm_delta.R ├── gkmsvm_kernel.R ├── gkmsvm_train.R └── gkmsvm_trainCV.R ├── gkmSVM.Rproj ├── man ├── genNullSeqs.Rd ├── gkmSVM-package.Rd ├── gkmsvm_classify.Rd ├── gkmsvm_delta.Rd ├── gkmsvm_kernel.Rd ├── gkmsvm_train.Rd └── gkmsvm_trainCV.Rd └── src ├── CalcWmML.cpp ├── CalcWmML.h ├── CbinMMtable.cpp ├── CbinMMtable.h ├── CbinMMtree.cpp ├── CbinMMtree.h ├── CiDLPasses.cpp ├── CiDLPasses.h ├── Converter.cpp ├── Converter.h ├── CountKLmers.cpp ├── CountKLmers.h ├── CountKLmersGeneral.cpp ├── CountKLmersGeneral.h ├── CountKLmersH.cpp ├── CountKLmersH.h ├── EstimLogRatio.cpp ├── EstimLogRatio.h ├── GTree.cpp ├── GTree.h ├── GTree2.cpp ├── GTree2.h ├── GTreeLeafData.cpp ├── GTreeLeafData.h ├── GTreeLeafData2.cpp ├── GTreeLeafData2.h ├── KLmer.cpp ├── KLmer.h ├── LKTree.cpp ├── LKTree.h ├── LList.cpp ├── LList.h ├── LTree.cpp ├── LTree.h ├── LTreeS.cpp ├── LTreeS.h ├── LTreef.cpp ├── LTreef.h ├── MLEstimKLmers.cpp ├── MLEstimKLmers.h ├── MLEstimKLmersLog.cpp ├── MLEstimKLmersLog.h ├── RcppExports.cpp ├── SVMtrain.cpp ├── SVMtrain.h ├── Sequence.cpp ├── Sequence.h ├── SequenceData.cpp ├── SequenceData.h ├── SequenceNames.cpp ├── SequenceNames.h ├── gkmCommonLib.cpp ├── gkmsvm_classify.cpp ├── gkmsvm_kernel.cpp ├── global.cpp ├── global.h ├── globalTypeDefs.h ├── globalvar.h ├── mainGkmKernel.cpp ├── mainSVMclassify.cpp └── mainSVMtrain.cpp /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mghandi/gkmSVM/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mghandi/gkmSVM/HEAD/LICENSE -------------------------------------------------------------------------------- /NAMESPACE: 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