├── .github └── workflows │ ├── PNM_matlab.yml │ └── documentation.yaml ├── .gitignore ├── CITATION.cff ├── LICENSE ├── README.md ├── _build └── doctrees │ ├── README.doctree │ ├── User_Manual.doctree │ ├── api.doctree │ ├── api │ └── sourceCode.doctree │ ├── feature-a.doctree │ └── index.doctree ├── doc ├── Makefile ├── README.md ├── User_Manual.md ├── _build │ ├── doctrees │ │ ├── User_Manual.doctree │ │ ├── api.doctree │ │ ├── api │ │ │ └── sourceCode.doctree │ │ ├── environment.pickle │ │ └── index.doctree │ └── html │ │ ├── .buildinfo │ │ ├── User_Manual.html │ │ ├── _static │ │ ├── _sphinx_javascript_frameworks_compat.js │ │ ├── basic.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── file.png │ │ ├── jquery-3.6.0.js │ │ ├── jquery.js │ │ ├── language_data.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── sphinx_highlight.js │ │ ├── underscore-1.13.1.js │ │ └── underscore.js │ │ ├── api.html │ │ ├── api │ │ └── sourceCode.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── search.html │ │ └── searchindex.js ├── api.rst ├── api │ └── sourceCode.rst ├── conf.py ├── index.rst ├── make.bat └── structureOfNetworkDataFiles.pdf ├── results ├── PNM.gif ├── drain.png ├── imb.png ├── quasi.png ├── simple_9_homogen_highAR │ ├── simple_9_homogen_highAR_PSD.jpg │ ├── simple_9_homogen_highAR_Pc-KrCurves_Drainage-Imbibition.jpg │ ├── simple_9_homogen_highAR_PressureDistribution.jpg │ ├── simple_9_homogen_highAR_TSD.jpg │ ├── simple_9_homogen_highAR_stocastic.txt │ ├── simple_9_homogen_highAR_twoPhaseFlowReport.txt │ └── visualization │ │ ├── simple_9_homogen_highAR_Initializing_000.vtk │ │ ├── simple_9_homogen_highAR_PD_001.vtk │ │ ├── simple_9_homogen_highAR_PD_002.vtk │ │ ├── simple_9_homogen_highAR_PD_003.vtk │ │ ├── simple_9_homogen_highAR_PD_004.vtk │ │ ├── simple_9_homogen_highAR_PD_005.vtk │ │ ├── simple_9_homogen_highAR_PD_006.vtk │ │ ├── simple_9_homogen_highAR_PD_007.vtk │ │ ├── simple_9_homogen_highAR_PD_008.vtk │ │ ├── simple_9_homogen_highAR_PD_009.vtk │ │ ├── simple_9_homogen_highAR_PD_010.vtk │ │ ├── simple_9_homogen_highAR_PD_011.vtk │ │ ├── simple_9_homogen_highAR_PD_012.vtk │ │ ├── simple_9_homogen_highAR_PD_013.vtk │ │ ├── simple_9_homogen_highAR_PD_014.vtk │ │ ├── simple_9_homogen_highAR_PD_015.vtk │ │ ├── simple_9_homogen_highAR_PD_016.vtk │ │ ├── simple_9_homogen_highAR_PD_017.vtk │ │ ├── simple_9_homogen_highAR_PD_018.vtk │ │ ├── simple_9_homogen_highAR_PD_019.vtk │ │ ├── simple_9_homogen_highAR_PD_020.vtk │ │ ├── simple_9_homogen_highAR_PD_021.vtk │ │ ├── simple_9_homogen_highAR_PD_022.vtk │ │ ├── simple_9_homogen_highAR_PD_023.vtk │ │ ├── simple_9_homogen_highAR_PD_024.vtk │ │ ├── simple_9_homogen_highAR_PD_025.vtk │ │ ├── simple_9_homogen_highAR_PD_026.vtk │ │ ├── simple_9_homogen_highAR_PD_027.vtk │ │ ├── simple_9_homogen_highAR_PD_028.vtk │ │ ├── simple_9_homogen_highAR_SI_001.vtk │ │ ├── simple_9_homogen_highAR_SI_002.vtk │ │ ├── simple_9_homogen_highAR_SI_003.vtk │ │ ├── simple_9_homogen_highAR_SI_004.vtk │ │ ├── simple_9_homogen_highAR_SI_005.vtk │ │ ├── simple_9_homogen_highAR_SI_006.vtk │ │ ├── simple_9_homogen_highAR_SI_007.vtk │ │ ├── simple_9_homogen_highAR_SI_008.vtk │ │ ├── simple_9_homogen_highAR_SI_009.vtk │ │ ├── simple_9_homogen_highAR_SI_010.vtk │ │ ├── simple_9_homogen_highAR_SI_011.vtk │ │ ├── simple_9_homogen_highAR_SI_012.vtk │ │ ├── simple_9_homogen_highAR_SI_013.vtk │ │ ├── simple_9_homogen_highAR_SI_014.vtk │ │ ├── simple_9_homogen_highAR_SI_015.vtk │ │ ├── simple_9_homogen_highAR_SI_016.vtk │ │ ├── simple_9_homogen_highAR_SI_017.vtk │ │ ├── simple_9_homogen_highAR_SI_018.vtk │ │ ├── simple_9_homogen_highAR_SI_019.vtk │ │ ├── simple_9_homogen_highAR_SI_020.vtk │ │ ├── simple_9_homogen_highAR_SI_021.vtk │ │ ├── simple_9_homogen_highAR_SI_022.vtk │ │ ├── simple_9_homogen_highAR_SI_023.vtk │ │ └── simple_9_homogen_highAR_SI_024.vtk └── simple_9_homogen_lowAR │ ├── simple_9_homogen_lowAR_PSD.jpg │ ├── simple_9_homogen_lowAR_Pc-KrCurves_Drainage-Imbibition.jpg │ ├── simple_9_homogen_lowAR_PressureDistribution.jpg │ ├── simple_9_homogen_lowAR_TSD.jpg │ ├── simple_9_homogen_lowAR_stocastic.txt │ ├── simple_9_homogen_lowAR_twoPhaseFlowReport.txt │ └── visualization │ ├── simple_9_homogen_lowAR_Initializing_000.vtk │ ├── simple_9_homogen_lowAR_PD_001.vtk │ ├── simple_9_homogen_lowAR_PD_002.vtk │ ├── simple_9_homogen_lowAR_PD_003.vtk │ ├── simple_9_homogen_lowAR_PD_004.vtk │ ├── simple_9_homogen_lowAR_PD_005.vtk │ ├── simple_9_homogen_lowAR_PD_006.vtk │ ├── simple_9_homogen_lowAR_PD_007.vtk │ ├── simple_9_homogen_lowAR_PD_008.vtk │ ├── simple_9_homogen_lowAR_PD_009.vtk │ ├── simple_9_homogen_lowAR_PD_010.vtk │ ├── simple_9_homogen_lowAR_PD_011.vtk │ ├── simple_9_homogen_lowAR_PD_012.vtk │ ├── simple_9_homogen_lowAR_PD_013.vtk │ ├── simple_9_homogen_lowAR_PD_014.vtk │ ├── simple_9_homogen_lowAR_PD_015.vtk │ ├── simple_9_homogen_lowAR_PD_016.vtk │ ├── simple_9_homogen_lowAR_PD_017.vtk │ ├── simple_9_homogen_lowAR_PD_018.vtk │ ├── simple_9_homogen_lowAR_PD_019.vtk │ ├── simple_9_homogen_lowAR_PD_020.vtk │ ├── simple_9_homogen_lowAR_PD_021.vtk │ ├── simple_9_homogen_lowAR_PD_022.vtk │ ├── simple_9_homogen_lowAR_PD_023.vtk │ ├── simple_9_homogen_lowAR_PD_024.vtk │ ├── simple_9_homogen_lowAR_PD_025.vtk │ ├── simple_9_homogen_lowAR_PD_026.vtk │ ├── simple_9_homogen_lowAR_SI_001.vtk │ ├── simple_9_homogen_lowAR_SI_002.vtk │ ├── simple_9_homogen_lowAR_SI_003.vtk │ ├── simple_9_homogen_lowAR_SI_004.vtk │ ├── simple_9_homogen_lowAR_SI_005.vtk │ ├── simple_9_homogen_lowAR_SI_006.vtk │ ├── simple_9_homogen_lowAR_SI_007.vtk │ ├── simple_9_homogen_lowAR_SI_008.vtk │ ├── simple_9_homogen_lowAR_SI_009.vtk │ ├── simple_9_homogen_lowAR_SI_010.vtk │ ├── simple_9_homogen_lowAR_SI_011.vtk │ ├── simple_9_homogen_lowAR_SI_012.vtk │ ├── simple_9_homogen_lowAR_SI_013.vtk │ ├── simple_9_homogen_lowAR_SI_014.vtk │ ├── simple_9_homogen_lowAR_SI_015.vtk │ ├── simple_9_homogen_lowAR_SI_016.vtk │ ├── simple_9_homogen_lowAR_SI_017.vtk │ ├── simple_9_homogen_lowAR_SI_018.vtk │ ├── simple_9_homogen_lowAR_SI_019.vtk │ ├── simple_9_homogen_lowAR_SI_020.vtk │ ├── simple_9_homogen_lowAR_SI_021.vtk │ ├── simple_9_homogen_lowAR_SI_022.vtk │ ├── simple_9_homogen_lowAR_SI_023.vtk │ ├── simple_9_homogen_lowAR_SI_024.vtk │ ├── simple_9_homogen_lowAR_SI_025.vtk │ ├── simple_9_homogen_lowAR_SI_026.vtk │ ├── simple_9_homogen_lowAR_SI_027.vtk │ ├── simple_9_homogen_lowAR_SI_028.vtk │ ├── simple_9_homogen_lowAR_SI_029.vtk │ ├── simple_9_homogen_lowAR_SI_030.vtk │ ├── simple_9_homogen_lowAR_SI_031.vtk │ ├── simple_9_homogen_lowAR_SI_032.vtk │ ├── simple_9_homogen_lowAR_SI_033.vtk │ └── simple_9_homogen_lowAR_SI_034.vtk └── src ├── +quasiStatic ├── @Element │ ├── Element.m │ ├── calculateConductance_Drainage.m │ ├── calculateConductance_Imbibition.m │ ├── calculateConductance_Imbibition_Patzek_Piri.m │ ├── calculateConductance_Imbibition_Valvatne.m │ ├── calculateConductance_Imbibition_Zolfaghari.m │ ├── calculateElementsProperties.m │ ├── calculateThresholdPressureLayerCollapse.m │ ├── calculateThresholdPressureLayerCollapse_Piri.m │ ├── calculateThresholdPressurePistonLike_Imbibition.m │ ├── calculateThresholdPressurePistonLike_Imbibition_Patzek_2003.m │ ├── calculateThresholdPressurePistonLike_Imbibition_Raeini.m │ ├── calculateThresholdPressurePistonLike_drainage.m │ ├── calculateThresholdPressureSnapOff.m │ ├── calculateThresholdPressureSnapOff_Patzek.m │ ├── calculateThresholdPressureSnapOff_Valvatne.m │ └── nonWettingLayerExistance.m ├── @Fluids │ └── Fluids.m ├── @IO │ ├── IO.m │ ├── output_networkStochasticAndPlotInfo_singlePhaseFlow.m │ ├── output_networkStochasticAndPlotInfo_twoPhaseFlow.m │ └── visualization.m ├── @Link │ └── Link.m ├── @Network │ ├── Network.m │ ├── calculateAbsolutePermeability.m │ ├── calculateConductance_and_Saturation_Drainage.m │ ├── calculateConductance_and_Saturation_Imbibition.m │ ├── calculateFlowRate.m │ ├── calculatePressureDistribution_TwoPhases.m │ ├── calculatePressureDistribution_singlePhaseFlow.m │ ├── calculateRelativePermeability_Drainage.m │ ├── calculateRelativePermeability_Imbibition.m │ ├── clustering_nonWettingPhase.m │ ├── clustering_wettingPhase.m │ ├── primaryDrainage.m │ ├── primaryDrainage_20191207.m │ ├── secondaryImbibition.m │ ├── secondaryImbibition_20191207.m │ └── secondaryImbibition_20191207new.m └── @Node │ ├── Node.m │ ├── calculateThresholdPressurePoreBodyFilling.m │ ├── calculateThresholdPressurePoreBodyFilling_Blunt1.m │ ├── calculateThresholdPressurePoreBodyFilling_Blunt2.m │ ├── calculateThresholdPressurePoreBodyFilling_Oren1.m │ ├── calculateThresholdPressurePoreBodyFilling_Oren2.m │ ├── calculateThresholdPressurePoreBodyFilling_Patzek.m │ ├── calculateThresholdPressurePoreBodyFilling_Piri.m │ └── calculateThresholdPressurePoreBodyFilling_Valvatne.m ├── Drainage.xlsx ├── DrainageData.mat ├── Imbibition.xlsx ├── ImbibitionData.mat ├── datasets └── NetworkDataFiles │ ├── A1_link1.dat │ ├── A1_link2.dat │ ├── A1_node1.dat │ ├── A1_node2.dat │ ├── A1_sub1_link1.dat │ ├── A1_sub1_link2.dat │ ├── A1_sub1_node1.dat │ ├── A1_sub1_node2.dat │ ├── Berea_big_link1.dat │ ├── Berea_big_link2.dat │ ├── Berea_big_node1.dat │ ├── Berea_big_node2.dat │ ├── Berea_link1.dat │ ├── Berea_link2.dat │ ├── Berea_node1.dat │ ├── Berea_node2.dat │ ├── C1_link1.dat │ ├── C1_link2.dat │ ├── C1_node1.dat │ ├── C1_node2.dat │ ├── C2_link1.dat │ ├── C2_link2.dat │ ├── C2_node1.dat │ ├── C2_node2.dat │ ├── CARB_link1.dat │ ├── CARB_link2.dat │ ├── CARB_node1.dat │ ├── CARB_node2.dat │ ├── Rock_link1.dat │ ├── Rock_link2.dat │ ├── Rock_node1.dat │ ├── Rock_node2.dat │ ├── simpleRaoof_link1.dat │ ├── simpleRaoof_link2.dat │ ├── simpleRaoof_node1.dat │ ├── simpleRaoof_node2.dat │ ├── simple_1000_link1.dat │ ├── simple_1000_link2.dat │ ├── simple_1000_node1.dat │ ├── simple_1000_node2.dat │ ├── simple_1000_sub1_link1.dat │ ├── simple_1000_sub1_link2.dat │ ├── simple_1000_sub1_node1.dat │ ├── simple_1000_sub1_node2.dat │ ├── simple_3_link1.dat │ ├── simple_3_link2.dat │ ├── simple_3_node1.dat │ ├── simple_3_node2.dat │ ├── simple_9_diffGeometry_link1.dat │ ├── simple_9_diffGeometry_link2.dat │ ├── simple_9_diffGeometry_node1.dat │ ├── simple_9_diffGeometry_node2.dat │ ├── simple_9_homogen_highAR_link1.dat │ ├── simple_9_homogen_highAR_link2.dat │ ├── simple_9_homogen_highAR_node1.dat │ ├── simple_9_homogen_highAR_node2.dat │ ├── simple_9_homogen_link1.dat │ ├── simple_9_homogen_link2.dat │ ├── simple_9_homogen_lowAR_link1.dat │ ├── simple_9_homogen_lowAR_link2.dat │ ├── simple_9_homogen_lowAR_node1.dat │ ├── simple_9_homogen_lowAR_node2.dat │ ├── simple_9_homogen_node1.dat │ ├── simple_9_homogen_node2.dat │ ├── simple_9_link1.dat │ ├── simple_9_link2.dat │ ├── simple_9_node1.dat │ ├── simple_9_node2.dat │ ├── simplest_link1.dat │ ├── simplest_link2.dat │ ├── simplest_node1.dat │ └── simplest_node2.dat ├── main.m ├── results ├── simple_9_homogen_highAR │ ├── simple_9_homogen_highAR_PSD.jpg │ ├── simple_9_homogen_highAR_Pc-KrCurves_Drainage-Imbibition.jpg │ ├── simple_9_homogen_highAR_PressureDistribution.jpg │ ├── simple_9_homogen_highAR_TSD.jpg │ ├── simple_9_homogen_highAR_stocastic.txt │ ├── simple_9_homogen_highAR_twoPhaseFlowReport.txt │ └── visualization │ │ ├── simple_9_homogen_highAR_Initializing_000.vtk │ │ ├── simple_9_homogen_highAR_PD_001.vtk │ │ ├── simple_9_homogen_highAR_PD_002.vtk │ │ ├── simple_9_homogen_highAR_PD_003.vtk │ │ ├── simple_9_homogen_highAR_PD_004.vtk │ │ ├── simple_9_homogen_highAR_PD_005.vtk │ │ ├── simple_9_homogen_highAR_PD_006.vtk │ │ ├── simple_9_homogen_highAR_PD_007.vtk │ │ ├── simple_9_homogen_highAR_PD_008.vtk │ │ ├── simple_9_homogen_highAR_PD_009.vtk │ │ ├── simple_9_homogen_highAR_PD_010.vtk │ │ ├── simple_9_homogen_highAR_PD_011.vtk │ │ ├── simple_9_homogen_highAR_PD_012.vtk │ │ ├── simple_9_homogen_highAR_PD_013.vtk │ │ ├── simple_9_homogen_highAR_PD_014.vtk │ │ ├── simple_9_homogen_highAR_PD_015.vtk │ │ ├── simple_9_homogen_highAR_PD_016.vtk │ │ ├── simple_9_homogen_highAR_PD_017.vtk │ │ ├── simple_9_homogen_highAR_PD_018.vtk │ │ ├── simple_9_homogen_highAR_PD_019.vtk │ │ ├── simple_9_homogen_highAR_PD_020.vtk │ │ ├── simple_9_homogen_highAR_PD_021.vtk │ │ ├── simple_9_homogen_highAR_PD_022.vtk │ │ ├── simple_9_homogen_highAR_PD_023.vtk │ │ ├── simple_9_homogen_highAR_PD_024.vtk │ │ ├── simple_9_homogen_highAR_PD_025.vtk │ │ ├── simple_9_homogen_highAR_PD_026.vtk │ │ ├── simple_9_homogen_highAR_PD_027.vtk │ │ ├── simple_9_homogen_highAR_PD_028.vtk │ │ ├── simple_9_homogen_highAR_SI_001.vtk │ │ ├── simple_9_homogen_highAR_SI_002.vtk │ │ ├── simple_9_homogen_highAR_SI_003.vtk │ │ ├── simple_9_homogen_highAR_SI_004.vtk │ │ ├── simple_9_homogen_highAR_SI_005.vtk │ │ ├── simple_9_homogen_highAR_SI_006.vtk │ │ ├── simple_9_homogen_highAR_SI_007.vtk │ │ ├── simple_9_homogen_highAR_SI_008.vtk │ │ ├── simple_9_homogen_highAR_SI_009.vtk │ │ ├── simple_9_homogen_highAR_SI_010.vtk │ │ ├── simple_9_homogen_highAR_SI_011.vtk │ │ ├── simple_9_homogen_highAR_SI_012.vtk │ │ ├── simple_9_homogen_highAR_SI_013.vtk │ │ ├── simple_9_homogen_highAR_SI_014.vtk │ │ ├── simple_9_homogen_highAR_SI_015.vtk │ │ ├── simple_9_homogen_highAR_SI_016.vtk │ │ ├── simple_9_homogen_highAR_SI_017.vtk │ │ ├── simple_9_homogen_highAR_SI_018.vtk │ │ ├── simple_9_homogen_highAR_SI_019.vtk │ │ ├── simple_9_homogen_highAR_SI_020.vtk │ │ ├── simple_9_homogen_highAR_SI_021.vtk │ │ ├── simple_9_homogen_highAR_SI_022.vtk │ │ ├── simple_9_homogen_highAR_SI_023.vtk │ │ └── simple_9_homogen_highAR_SI_024.vtk └── visualization │ ├── _Initializing_000.vtk │ ├── _PD_001.vtk │ ├── _PD_002.vtk │ ├── _PD_003.vtk │ ├── _PD_004.vtk │ ├── _PD_005.vtk │ ├── _PD_006.vtk │ ├── _PD_007.vtk │ ├── _PD_008.vtk │ ├── _PD_009.vtk │ ├── _PD_010.vtk │ ├── _PD_011.vtk │ ├── _PD_012.vtk │ ├── _PD_013.vtk │ ├── _PD_014.vtk │ ├── _PD_015.vtk │ 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