├── .github └── workflows │ └── build_wheels.yml ├── .gitignore ├── LICENCE ├── Makefile ├── README.md ├── docs └── opentims++ │ ├── Doxyfile │ ├── html │ ├── annotated.html │ ├── bc_s.png │ ├── bdwn.png │ ├── classTimsDataHandle-members.html │ ├── classTimsDataHandle.html │ ├── classTimsFrame-members.html │ ├── classTimsFrame.html │ ├── classes.html │ ├── closed.png │ ├── dir_58b0af57c101d586ec15999d26232799.html │ ├── doc.png │ ├── doxygen.css │ ├── doxygen.png │ ├── dynsections.js │ ├── files.html │ ├── folderclosed.png │ ├── folderopen.png │ ├── functions.html │ ├── functions_func.html │ ├── functions_vars.html │ ├── index.html │ ├── jquery.js │ ├── menu.js │ ├── menudata.js │ ├── nav_f.png │ ├── nav_g.png │ ├── nav_h.png │ ├── open.png │ ├── opentims_8h_source.html │ ├── search │ │ ├── all_0.html │ │ ├── all_0.js │ │ ├── all_1.html │ │ ├── all_1.js │ │ ├── all_2.html │ │ ├── all_2.js │ │ ├── all_3.html │ │ ├── all_3.js │ │ ├── all_4.html │ │ ├── all_4.js │ │ ├── all_5.html │ │ ├── all_5.js │ │ ├── all_6.html │ │ ├── all_6.js │ │ ├── all_7.html │ │ ├── all_7.js │ │ ├── all_8.html │ │ ├── all_8.js │ │ ├── all_9.html │ │ ├── all_9.js │ │ ├── all_a.html │ │ ├── all_a.js │ │ ├── all_b.html │ │ ├── all_b.js │ │ ├── classes_0.html │ │ ├── classes_0.js │ │ ├── close.png │ │ ├── functions_0.html │ │ ├── functions_0.js │ │ ├── functions_1.html │ │ ├── functions_1.js │ │ ├── functions_2.html │ │ ├── functions_2.js │ │ ├── functions_3.html │ │ ├── functions_3.js │ │ ├── functions_4.html │ │ ├── functions_4.js │ │ ├── functions_5.html │ │ ├── functions_5.js │ │ ├── functions_6.html │ │ ├── functions_6.js │ │ ├── functions_7.html │ │ ├── functions_7.js │ │ ├── functions_8.html │ │ ├── functions_8.js │ │ ├── functions_9.html │ │ ├── functions_9.js │ │ ├── functions_a.html │ │ ├── functions_a.js │ │ ├── functions_b.html │ │ ├── functions_b.js │ │ ├── mag_sel.png │ │ ├── nomatches.html │ │ ├── search.css │ │ ├── search.js │ │ ├── search_l.png │ │ ├── search_m.png │ │ ├── search_r.png │ │ ├── searchdata.js │ │ ├── variables_0.html │ │ ├── variables_0.js │ │ ├── variables_1.html │ │ ├── variables_1.js │ │ ├── variables_2.html │ │ └── variables_2.js │ ├── splitbar.png │ ├── sync_off.png │ ├── sync_on.png │ ├── tab_a.png │ ├── tab_b.png │ ├── tab_h.png │ ├── tab_s.png │ └── tabs.css │ └── mainpage++.md ├── examples ├── Makefile ├── get_data.R ├── get_data.cpp └── get_data.py ├── opentims++ ├── Makefile ├── bruker_api.h ├── converters.cpp ├── converters.h ├── libopentims_py.cpp ├── mio.hpp ├── opentims.cpp ├── opentims.h ├── opentims_all.cpp ├── opentims_all.h ├── opentims_pybind11.cpp ├── platform.h ├── platform_os.h ├── scan2inv_ion_mobility_converter.cpp ├── scan2inv_ion_mobility_converter.h ├── so_manager.cpp ├── so_manager.h ├── sqlite │ ├── sqlite3.c │ └── sqlite3.h ├── sqlite_helper.cpp ├── sqlite_helper.h ├── test.cpp ├── thread_mgr.cpp ├── thread_mgr.h ├── tof2mz_converter.cpp ├── tof2mz_converter.h └── zstd │ ├── zstd.h │ └── zstddeclib.c ├── opentimsj ├── build.sbt └── src │ └── main │ ├── native │ ├── Makefile │ ├── createHeaderFile.sh │ ├── timsj_TimsTOFExperimentReader.cpp │ └── timsj_TimsTOFExperimentReader.h │ └── scala │ ├── Example.scala │ └── timsj │ ├── TimsTOFExperimentReader.scala │ ├── TimsTOFFrameMetaData.scala │ └── TimsTOFRawFrame.scala ├── opentimspy ├── __init__.py ├── dimension_translations.py ├── misc.py ├── opentims++ ├── opentims.py ├── plotting.py └── sql.py ├── opentimsr ├── DESCRIPTION ├── NAMESPACE ├── R │ ├── RcppExports.R │ └── opentimsr.R ├── inst │ └── CITATION ├── man │ ├── CloseTIMS.Rd │ ├── MS1.Rd │ ├── OpenTIMS-class.Rd │ ├── OpenTIMS.Rd │ ├── download_bruker_proprietary_code.Rd │ ├── explore.tdf.tables.Rd │ ├── length-OpenTIMS-method.Rd │ ├── min_max_measurements.Rd │ ├── opentims_set_threads.Rd │ ├── peaks_per_frame_cnts.Rd │ ├── query.Rd │ ├── query_slice.Rd │ ├── range-OpenTIMS-method.Rd │ ├── retention_times.Rd │ ├── rt_query.Rd │ ├── setup_bruker_so.Rd │ ├── sub-OpenTIMS-method.Rd │ ├── table2df.Rd │ └── tables_names.Rd └── src │ ├── RcppExports.cpp │ ├── Rinterface.cpp │ ├── bruker_api.h │ ├── converters.cpp │ ├── converters.h │ ├── mio.h │ ├── opentims.cpp │ ├── opentims.h │ ├── opentimsr_types.h │ ├── platform.h │ ├── platform_os.h │ ├── scan2inv_ion_mobility_converter.cpp │ ├── scan2inv_ion_mobility_converter.h │ ├── so_manager.cpp │ ├── so_manager.h │ ├── thread_mgr.cpp │ ├── thread_mgr.h │ ├── tof2mz_converter.cpp │ ├── tof2mz_converter.h │ ├── zstd │ ├── zstd.h │ └── zstddeclib.c │ └── zstddec_cpl.c ├── pyproject.toml ├── rdocs.R ├── scripts ├── opentims_display_frame.py ├── opentims_extract_tdf.py ├── opentims_frame_sum.py ├── opentims_summary.py └── opentims_verify.py ├── setup.cfg ├── setup.py ├── speed.png └── test ├── getting_DDA_precursors.py ├── test.py ├── test_2.py ├── test_injection.py └── test_speed.py /.github/workflows/build_wheels.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/.github/workflows/build_wheels.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENCE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/LICENCE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/README.md -------------------------------------------------------------------------------- /docs/opentims++/Doxyfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/Doxyfile -------------------------------------------------------------------------------- /docs/opentims++/html/annotated.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/annotated.html -------------------------------------------------------------------------------- /docs/opentims++/html/bc_s.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/bc_s.png -------------------------------------------------------------------------------- /docs/opentims++/html/bdwn.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/bdwn.png -------------------------------------------------------------------------------- /docs/opentims++/html/classTimsDataHandle-members.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/classTimsDataHandle-members.html -------------------------------------------------------------------------------- /docs/opentims++/html/classTimsDataHandle.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/classTimsDataHandle.html -------------------------------------------------------------------------------- /docs/opentims++/html/classTimsFrame-members.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/classTimsFrame-members.html -------------------------------------------------------------------------------- /docs/opentims++/html/classTimsFrame.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/classTimsFrame.html -------------------------------------------------------------------------------- /docs/opentims++/html/classes.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/classes.html -------------------------------------------------------------------------------- /docs/opentims++/html/closed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/closed.png -------------------------------------------------------------------------------- /docs/opentims++/html/dir_58b0af57c101d586ec15999d26232799.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/dir_58b0af57c101d586ec15999d26232799.html -------------------------------------------------------------------------------- /docs/opentims++/html/doc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/doc.png -------------------------------------------------------------------------------- /docs/opentims++/html/doxygen.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/doxygen.css -------------------------------------------------------------------------------- /docs/opentims++/html/doxygen.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/doxygen.png -------------------------------------------------------------------------------- /docs/opentims++/html/dynsections.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/dynsections.js -------------------------------------------------------------------------------- /docs/opentims++/html/files.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/files.html -------------------------------------------------------------------------------- /docs/opentims++/html/folderclosed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/folderclosed.png -------------------------------------------------------------------------------- /docs/opentims++/html/folderopen.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/folderopen.png -------------------------------------------------------------------------------- /docs/opentims++/html/functions.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/functions.html -------------------------------------------------------------------------------- /docs/opentims++/html/functions_func.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/functions_func.html -------------------------------------------------------------------------------- /docs/opentims++/html/functions_vars.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/functions_vars.html -------------------------------------------------------------------------------- /docs/opentims++/html/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/index.html -------------------------------------------------------------------------------- /docs/opentims++/html/jquery.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/jquery.js -------------------------------------------------------------------------------- /docs/opentims++/html/menu.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/menu.js -------------------------------------------------------------------------------- /docs/opentims++/html/menudata.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/menudata.js -------------------------------------------------------------------------------- /docs/opentims++/html/nav_f.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/nav_f.png -------------------------------------------------------------------------------- /docs/opentims++/html/nav_g.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/nav_g.png -------------------------------------------------------------------------------- /docs/opentims++/html/nav_h.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/nav_h.png -------------------------------------------------------------------------------- /docs/opentims++/html/open.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/open.png -------------------------------------------------------------------------------- /docs/opentims++/html/opentims_8h_source.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/opentims_8h_source.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_0.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_0.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_0.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_0.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_1.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_1.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_2.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_2.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_2.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_3.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_3.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_3.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_3.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_4.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_4.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_4.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_4.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_5.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_5.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_5.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_5.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_6.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_6.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_6.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_6.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_7.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_7.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_7.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_7.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_8.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_8.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_8.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_8.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_9.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_9.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_9.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_9.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_a.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_a.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_a.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_a.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_b.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_b.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/all_b.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/all_b.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/classes_0.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/classes_0.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/classes_0.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/classes_0.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/close.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/close.png -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_0.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_0.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_0.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_0.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_1.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_1.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_2.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_2.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_2.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_3.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_3.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_3.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_3.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_4.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_4.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_4.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_4.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_5.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_5.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_5.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_5.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_6.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_6.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_6.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_6.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_7.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_7.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_7.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_7.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_8.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_8.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_8.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_8.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_9.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_9.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_9.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_9.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_a.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_a.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_a.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_a.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_b.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_b.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/functions_b.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/functions_b.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/mag_sel.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/mag_sel.png -------------------------------------------------------------------------------- /docs/opentims++/html/search/nomatches.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/nomatches.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/search.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/search.css -------------------------------------------------------------------------------- /docs/opentims++/html/search/search.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/search.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/search_l.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/search_l.png -------------------------------------------------------------------------------- /docs/opentims++/html/search/search_m.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/search_m.png -------------------------------------------------------------------------------- /docs/opentims++/html/search/search_r.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/search_r.png -------------------------------------------------------------------------------- /docs/opentims++/html/search/searchdata.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/searchdata.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/variables_0.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/variables_0.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/variables_0.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/variables_0.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/variables_1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/variables_1.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/variables_1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/variables_1.js -------------------------------------------------------------------------------- /docs/opentims++/html/search/variables_2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/variables_2.html -------------------------------------------------------------------------------- /docs/opentims++/html/search/variables_2.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/search/variables_2.js -------------------------------------------------------------------------------- /docs/opentims++/html/splitbar.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/splitbar.png -------------------------------------------------------------------------------- /docs/opentims++/html/sync_off.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/sync_off.png -------------------------------------------------------------------------------- /docs/opentims++/html/sync_on.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/sync_on.png -------------------------------------------------------------------------------- /docs/opentims++/html/tab_a.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/tab_a.png -------------------------------------------------------------------------------- /docs/opentims++/html/tab_b.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/tab_b.png -------------------------------------------------------------------------------- /docs/opentims++/html/tab_h.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/tab_h.png -------------------------------------------------------------------------------- /docs/opentims++/html/tab_s.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/tab_s.png -------------------------------------------------------------------------------- /docs/opentims++/html/tabs.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/html/tabs.css -------------------------------------------------------------------------------- /docs/opentims++/mainpage++.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/docs/opentims++/mainpage++.md -------------------------------------------------------------------------------- /examples/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/examples/Makefile -------------------------------------------------------------------------------- /examples/get_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/examples/get_data.R -------------------------------------------------------------------------------- /examples/get_data.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/examples/get_data.cpp -------------------------------------------------------------------------------- /examples/get_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/examples/get_data.py -------------------------------------------------------------------------------- /opentims++/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/Makefile -------------------------------------------------------------------------------- /opentims++/bruker_api.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/bruker_api.h -------------------------------------------------------------------------------- /opentims++/converters.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/converters.cpp -------------------------------------------------------------------------------- /opentims++/converters.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/converters.h -------------------------------------------------------------------------------- /opentims++/libopentims_py.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/libopentims_py.cpp -------------------------------------------------------------------------------- /opentims++/mio.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/mio.hpp -------------------------------------------------------------------------------- /opentims++/opentims.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/opentims.cpp -------------------------------------------------------------------------------- /opentims++/opentims.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/opentims.h -------------------------------------------------------------------------------- /opentims++/opentims_all.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/opentims_all.cpp -------------------------------------------------------------------------------- /opentims++/opentims_all.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/opentims_all.h -------------------------------------------------------------------------------- /opentims++/opentims_pybind11.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/opentims_pybind11.cpp -------------------------------------------------------------------------------- /opentims++/platform.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/platform.h -------------------------------------------------------------------------------- /opentims++/platform_os.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/platform_os.h -------------------------------------------------------------------------------- /opentims++/scan2inv_ion_mobility_converter.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/scan2inv_ion_mobility_converter.cpp -------------------------------------------------------------------------------- /opentims++/scan2inv_ion_mobility_converter.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/scan2inv_ion_mobility_converter.h -------------------------------------------------------------------------------- /opentims++/so_manager.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/so_manager.cpp -------------------------------------------------------------------------------- /opentims++/so_manager.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/so_manager.h -------------------------------------------------------------------------------- /opentims++/sqlite/sqlite3.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/sqlite/sqlite3.c -------------------------------------------------------------------------------- /opentims++/sqlite/sqlite3.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/sqlite/sqlite3.h -------------------------------------------------------------------------------- /opentims++/sqlite_helper.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/sqlite_helper.cpp -------------------------------------------------------------------------------- /opentims++/sqlite_helper.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/sqlite_helper.h -------------------------------------------------------------------------------- /opentims++/test.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/test.cpp -------------------------------------------------------------------------------- /opentims++/thread_mgr.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/thread_mgr.cpp -------------------------------------------------------------------------------- /opentims++/thread_mgr.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/thread_mgr.h -------------------------------------------------------------------------------- /opentims++/tof2mz_converter.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/tof2mz_converter.cpp -------------------------------------------------------------------------------- /opentims++/tof2mz_converter.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/tof2mz_converter.h -------------------------------------------------------------------------------- /opentims++/zstd/zstd.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/zstd/zstd.h -------------------------------------------------------------------------------- /opentims++/zstd/zstddeclib.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentims++/zstd/zstddeclib.c -------------------------------------------------------------------------------- /opentimsj/build.sbt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/build.sbt -------------------------------------------------------------------------------- /opentimsj/src/main/native/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/native/Makefile -------------------------------------------------------------------------------- /opentimsj/src/main/native/createHeaderFile.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/native/createHeaderFile.sh -------------------------------------------------------------------------------- /opentimsj/src/main/native/timsj_TimsTOFExperimentReader.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/native/timsj_TimsTOFExperimentReader.cpp -------------------------------------------------------------------------------- /opentimsj/src/main/native/timsj_TimsTOFExperimentReader.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/native/timsj_TimsTOFExperimentReader.h -------------------------------------------------------------------------------- /opentimsj/src/main/scala/Example.scala: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/scala/Example.scala -------------------------------------------------------------------------------- /opentimsj/src/main/scala/timsj/TimsTOFExperimentReader.scala: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/scala/timsj/TimsTOFExperimentReader.scala -------------------------------------------------------------------------------- /opentimsj/src/main/scala/timsj/TimsTOFFrameMetaData.scala: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/scala/timsj/TimsTOFFrameMetaData.scala -------------------------------------------------------------------------------- /opentimsj/src/main/scala/timsj/TimsTOFRawFrame.scala: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsj/src/main/scala/timsj/TimsTOFRawFrame.scala -------------------------------------------------------------------------------- /opentimspy/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimspy/__init__.py -------------------------------------------------------------------------------- /opentimspy/dimension_translations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimspy/dimension_translations.py -------------------------------------------------------------------------------- /opentimspy/misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimspy/misc.py -------------------------------------------------------------------------------- /opentimspy/opentims++: -------------------------------------------------------------------------------- 1 | ../opentims++ -------------------------------------------------------------------------------- /opentimspy/opentims.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimspy/opentims.py -------------------------------------------------------------------------------- /opentimspy/plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimspy/plotting.py -------------------------------------------------------------------------------- /opentimspy/sql.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimspy/sql.py -------------------------------------------------------------------------------- /opentimsr/DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/DESCRIPTION -------------------------------------------------------------------------------- /opentimsr/NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/NAMESPACE -------------------------------------------------------------------------------- /opentimsr/R/RcppExports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/R/RcppExports.R -------------------------------------------------------------------------------- /opentimsr/R/opentimsr.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/R/opentimsr.R -------------------------------------------------------------------------------- /opentimsr/inst/CITATION: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /opentimsr/man/CloseTIMS.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/CloseTIMS.Rd -------------------------------------------------------------------------------- /opentimsr/man/MS1.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/MS1.Rd -------------------------------------------------------------------------------- /opentimsr/man/OpenTIMS-class.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/OpenTIMS-class.Rd -------------------------------------------------------------------------------- /opentimsr/man/OpenTIMS.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/OpenTIMS.Rd -------------------------------------------------------------------------------- /opentimsr/man/download_bruker_proprietary_code.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/download_bruker_proprietary_code.Rd -------------------------------------------------------------------------------- /opentimsr/man/explore.tdf.tables.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/explore.tdf.tables.Rd -------------------------------------------------------------------------------- /opentimsr/man/length-OpenTIMS-method.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/length-OpenTIMS-method.Rd -------------------------------------------------------------------------------- /opentimsr/man/min_max_measurements.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/min_max_measurements.Rd -------------------------------------------------------------------------------- /opentimsr/man/opentims_set_threads.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/opentims_set_threads.Rd -------------------------------------------------------------------------------- /opentimsr/man/peaks_per_frame_cnts.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/peaks_per_frame_cnts.Rd -------------------------------------------------------------------------------- /opentimsr/man/query.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/query.Rd -------------------------------------------------------------------------------- /opentimsr/man/query_slice.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/query_slice.Rd -------------------------------------------------------------------------------- /opentimsr/man/range-OpenTIMS-method.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/range-OpenTIMS-method.Rd -------------------------------------------------------------------------------- /opentimsr/man/retention_times.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/retention_times.Rd -------------------------------------------------------------------------------- /opentimsr/man/rt_query.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/rt_query.Rd -------------------------------------------------------------------------------- /opentimsr/man/setup_bruker_so.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/setup_bruker_so.Rd -------------------------------------------------------------------------------- /opentimsr/man/sub-OpenTIMS-method.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/sub-OpenTIMS-method.Rd -------------------------------------------------------------------------------- /opentimsr/man/table2df.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/table2df.Rd -------------------------------------------------------------------------------- /opentimsr/man/tables_names.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/man/tables_names.Rd -------------------------------------------------------------------------------- /opentimsr/src/RcppExports.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/RcppExports.cpp -------------------------------------------------------------------------------- /opentimsr/src/Rinterface.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/Rinterface.cpp -------------------------------------------------------------------------------- /opentimsr/src/bruker_api.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/bruker_api.h -------------------------------------------------------------------------------- /opentimsr/src/converters.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/converters.cpp -------------------------------------------------------------------------------- /opentimsr/src/converters.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/converters.h -------------------------------------------------------------------------------- /opentimsr/src/mio.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/mio.h -------------------------------------------------------------------------------- /opentimsr/src/opentims.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/opentims.cpp -------------------------------------------------------------------------------- /opentimsr/src/opentims.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/opentims.h -------------------------------------------------------------------------------- /opentimsr/src/opentimsr_types.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/opentimsr_types.h -------------------------------------------------------------------------------- /opentimsr/src/platform.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/platform.h -------------------------------------------------------------------------------- /opentimsr/src/platform_os.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/platform_os.h -------------------------------------------------------------------------------- /opentimsr/src/scan2inv_ion_mobility_converter.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/scan2inv_ion_mobility_converter.cpp -------------------------------------------------------------------------------- /opentimsr/src/scan2inv_ion_mobility_converter.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/scan2inv_ion_mobility_converter.h -------------------------------------------------------------------------------- /opentimsr/src/so_manager.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/so_manager.cpp -------------------------------------------------------------------------------- /opentimsr/src/so_manager.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/so_manager.h -------------------------------------------------------------------------------- /opentimsr/src/thread_mgr.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/thread_mgr.cpp -------------------------------------------------------------------------------- /opentimsr/src/thread_mgr.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/thread_mgr.h -------------------------------------------------------------------------------- /opentimsr/src/tof2mz_converter.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/tof2mz_converter.cpp -------------------------------------------------------------------------------- /opentimsr/src/tof2mz_converter.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/tof2mz_converter.h -------------------------------------------------------------------------------- /opentimsr/src/zstd/zstd.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/zstd/zstd.h -------------------------------------------------------------------------------- /opentimsr/src/zstd/zstddeclib.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/zstd/zstddeclib.c -------------------------------------------------------------------------------- /opentimsr/src/zstddec_cpl.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/opentimsr/src/zstddec_cpl.c -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/pyproject.toml -------------------------------------------------------------------------------- /rdocs.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/rdocs.R -------------------------------------------------------------------------------- /scripts/opentims_display_frame.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/scripts/opentims_display_frame.py -------------------------------------------------------------------------------- /scripts/opentims_extract_tdf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/scripts/opentims_extract_tdf.py -------------------------------------------------------------------------------- /scripts/opentims_frame_sum.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/scripts/opentims_frame_sum.py -------------------------------------------------------------------------------- /scripts/opentims_summary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/scripts/opentims_summary.py -------------------------------------------------------------------------------- /scripts/opentims_verify.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/scripts/opentims_verify.py -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/setup.cfg -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/setup.py -------------------------------------------------------------------------------- /speed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/speed.png -------------------------------------------------------------------------------- /test/getting_DDA_precursors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/test/getting_DDA_precursors.py -------------------------------------------------------------------------------- /test/test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/test/test.py -------------------------------------------------------------------------------- /test/test_2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/test/test_2.py -------------------------------------------------------------------------------- /test/test_injection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/test/test_injection.py -------------------------------------------------------------------------------- /test/test_speed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/michalsta/opentims/HEAD/test/test_speed.py --------------------------------------------------------------------------------