├── .gitignore ├── Documentation ├── Building EMUs.md ├── Computer setup.md ├── Diagrams │ ├── EMU v1 fritzing diagram.fzz │ ├── EMU v1 fritzing diagram.pdf │ └── EMU v1 fritzing schematic.pdf ├── Downloading data.md ├── EMU Construction Video Script.pdf ├── EMU programming.md ├── Images │ ├── 100k-resistor.jpg │ ├── 128x64-oled.jpg │ ├── 330k-resistor.jpg │ ├── Esplorer-settings.png │ ├── IMG_6076.JPG │ ├── aa-battery.jpg │ ├── ads1115.jpg │ ├── battery-holder.jpg │ ├── bh1750.jpg │ ├── bme280.jpg │ ├── breadboard.jpg │ ├── container.jpg │ ├── cp2102.jpg │ ├── cr2032.jpg │ ├── d1-mini.jpg │ ├── ds3231.jpg │ ├── dupont-10cm-mf.jpg │ ├── dupont-30cm-ff.jpg │ ├── dupont-30cm-mf.jpg │ ├── dupont-shells.jpg │ ├── heat-shrink-tubing.jpg │ ├── jakemy-wire-cutter.jpg │ ├── jumper-wires.jpg │ ├── nanoprotech.jpg │ ├── ndp6020p.jpg │ ├── pin-headers.jpg │ ├── resistor-kit.jpg │ ├── silicone-conformal.jpg │ ├── soil-moisture-probe.jpg │ ├── solder-stand.jpg │ ├── solder-tip-cleaner.jpg │ ├── solder-wire.jpg │ ├── victor-81d.jpg │ ├── voxlink-usb.jpg │ └── yihua-947.jpg ├── Lua resources.md ├── Parts list.md ├── Readme.md └── Troubleshooting.md ├── Drivers ├── CH340G - Mac.zip ├── CH340G - Windows - v3.4.2014.8.zip └── Readme.md ├── EMU-Analysis ├── Analyses │ ├── Calibration │ │ ├── Calibration.Rmd │ │ ├── Calibration.md │ │ ├── Calibration_files │ │ │ └── figure-html │ │ │ │ ├── Light_model_comparison-1.pdf │ │ │ │ ├── Light_model_comparison-1.png │ │ │ │ ├── Light_predict-1.pdf │ │ │ │ ├── Light_predict-1.png │ │ │ │ ├── Light_quad_calibration-1.pdf │ │ │ │ ├── Light_quad_calibration-1.png │ │ │ │ ├── Soil_predict_comparison-1.pdf │ │ │ │ ├── Soil_predict_comparison-1.png │ │ │ │ ├── Soil_probes_over_time-1.pdf │ │ │ │ ├── Soil_probes_over_time-1.png │ │ │ │ ├── Soil_quad_calibration-1.pdf │ │ │ │ └── Soil_quad_calibration-1.png │ │ ├── gold-soil-calibration.csv │ │ ├── light-calibration.csv │ │ └── silver-soil-calibration.csv │ └── Fenton Hypotheses │ │ ├── Fenton Hypotheses.Rmd │ │ ├── Fenton_Hypotheses.md │ │ ├── Fenton_Hypotheses_files │ │ └── figure-html │ │ │ ├── Hourly_Differences-1.pdf │ │ │ ├── Hourly_Differences-1.png │ │ │ ├── Hourly_Means-1.pdf │ │ │ ├── Hourly_Means-1.png │ │ │ ├── Soil_Gradient-1.pdf │ │ │ └── Soil_Gradient-1.png │ │ ├── Paired-T-tests.Rmd │ │ ├── Paired-T-tests.md │ │ ├── Sensor-Comparison.Rmd │ │ ├── Sensor-Comparison.md │ │ ├── Sensor-Comparison_files │ │ └── figure-html │ │ │ ├── Humid_Comp-1.pdf │ │ │ ├── Humid_Comp-1.png │ │ │ ├── Humid_Diff-1.pdf │ │ │ ├── Humid_Diff-1.png │ │ │ ├── Temp_Comp_Hobo-1.pdf │ │ │ ├── Temp_Comp_Hobo-1.png │ │ │ ├── Temp_Comp_iButton-1.pdf │ │ │ ├── Temp_Comp_iButton-1.png │ │ │ ├── Temp_Comp_iButton_Hobo-1.pdf │ │ │ ├── Temp_Comp_iButton_Hobo-1.png │ │ │ ├── Temp_Diff_Hobo-1.pdf │ │ │ ├── Temp_Diff_Hobo-1.png │ │ │ ├── Temp_Diff_iButton-1.pdf │ │ │ ├── Temp_Diff_iButton-1.png │ │ │ ├── Temp_Humid_Comp-1.pdf │ │ │ └── Temp_Humid_Comp-1.png │ │ ├── Transect Comparison Models.Rmd │ │ ├── Transect_Comparison_Models.md │ │ ├── Transect_Comparison_Models_files │ │ └── figure-html │ │ │ ├── Humid_Comp-1.pdf │ │ │ ├── Humid_Comp-1.png │ │ │ ├── Humid_Comp-2.pdf │ │ │ ├── Humid_Comp-2.png │ │ │ ├── Humid_Comp-3.pdf │ │ │ ├── Humid_Comp-3.png │ │ │ ├── Humid_Comp-4.pdf │ │ │ ├── Humid_Comp-4.png │ │ │ ├── Humid_Comp-5.pdf │ │ │ ├── Humid_Comp-5.png │ │ │ ├── PFD_Comp-1.pdf │ │ │ ├── PFD_Comp-1.png │ │ │ ├── PFD_Comp-2.pdf │ │ │ ├── PFD_Comp-2.png │ │ │ ├── PFD_Comp-3.pdf │ │ │ ├── PFD_Comp-3.png │ │ │ ├── PFD_Comp-4.pdf │ │ │ ├── PFD_Comp-4.png │ │ │ ├── PFD_Comp-5.pdf │ │ │ ├── PFD_Comp-5.png │ │ │ ├── Temp_Comp-1.pdf │ │ │ ├── Temp_Comp-1.png │ │ │ ├── Temp_Comp-2.pdf │ │ │ ├── Temp_Comp-2.png │ │ │ ├── Temp_Comp-3.pdf │ │ │ ├── Temp_Comp-3.png │ │ │ ├── Temp_Comp-4.pdf │ │ │ ├── Temp_Comp-4.png │ │ │ ├── Temp_Comp-5.pdf │ │ │ ├── Temp_Comp-5.png │ │ │ ├── VWC_Comp-1.pdf │ │ │ ├── VWC_Comp-1.png │ │ │ ├── VWC_Comp-2.pdf │ │ │ ├── VWC_Comp-2.png │ │ │ ├── VWC_Comp-3.pdf │ │ │ ├── VWC_Comp-3.png │ │ │ ├── VWC_Comp-4.pdf │ │ │ ├── VWC_Comp-4.png │ │ │ ├── VWC_Comp-5.pdf │ │ │ └── VWC_Comp-5.png │ │ ├── Within-Transect Models.Rmd │ │ ├── Within-Transect_Models.md │ │ ├── Within-Transect_Models_files │ │ └── figure-html │ │ │ ├── Meadow_Humid-1.pdf │ │ │ ├── Meadow_Humid-1.png │ │ │ ├── Meadow_Humid-2.pdf │ │ │ ├── Meadow_Humid-2.png │ │ │ ├── Meadow_Humid-3.pdf │ │ │ ├── Meadow_Humid-3.png │ │ │ ├── Meadow_Humid-4.pdf │ │ │ ├── Meadow_Humid-4.png │ │ │ ├── Meadow_PFD-1.pdf │ │ │ ├── Meadow_PFD-1.png │ │ │ ├── Meadow_PFD-2.pdf │ │ │ ├── Meadow_PFD-2.png │ │ │ ├── Meadow_PFD-3.pdf │ │ │ ├── Meadow_PFD-3.png │ │ │ ├── Meadow_PFD-4.pdf │ │ │ ├── Meadow_PFD-4.png │ │ │ ├── Meadow_Temp-1.pdf │ │ │ ├── Meadow_Temp-1.png │ │ │ ├── Meadow_Temp-2.pdf │ │ │ ├── Meadow_Temp-2.png │ │ │ ├── Meadow_Temp-3.pdf │ │ │ ├── Meadow_Temp-3.png │ │ │ ├── Meadow_Temp-4.pdf │ │ │ ├── Meadow_Temp-4.png │ │ │ ├── Meadow_VWC-1.pdf │ │ │ ├── Meadow_VWC-1.png │ │ │ ├── Meadow_VWC-2.pdf │ │ │ ├── Meadow_VWC-2.png │ │ │ ├── Meadow_VWC-3.pdf │ │ │ ├── Meadow_VWC-3.png │ │ │ ├── Meadow_VWC-4.pdf │ │ │ ├── Meadow_VWC-4.png │ │ │ ├── Woods_Humid-1.pdf │ │ │ ├── Woods_Humid-1.png │ │ │ ├── Woods_Humid-2.pdf │ │ │ ├── Woods_Humid-2.png │ │ │ ├── Woods_Humid-3.pdf │ │ │ ├── Woods_Humid-3.png │ │ │ ├── Woods_Humid-4.pdf │ │ │ ├── Woods_Humid-4.png │ │ │ ├── Woods_PFD-1.pdf │ │ │ ├── Woods_PFD-1.png │ │ │ ├── Woods_PFD-2.pdf │ │ │ ├── Woods_PFD-2.png │ │ │ ├── Woods_PFD-3.pdf │ │ │ ├── Woods_PFD-3.png │ │ │ ├── Woods_PFD-4.pdf │ │ │ ├── Woods_PFD-4.png │ │ │ ├── Woods_Temp-1.pdf │ │ │ ├── Woods_Temp-1.png │ │ │ ├── Woods_Temp-2.pdf │ │ │ ├── Woods_Temp-2.png │ │ │ ├── Woods_Temp-3.pdf │ │ │ ├── Woods_Temp-3.png │ │ │ ├── Woods_Temp-4.pdf │ │ │ ├── Woods_Temp-4.png │ │ │ ├── Woods_VWC-1.pdf │ │ │ ├── Woods_VWC-1.png │ │ │ ├── Woods_VWC-2.pdf │ │ │ ├── Woods_VWC-2.png │ │ │ ├── Woods_VWC-3.pdf │ │ │ ├── Woods_VWC-3.png │ │ │ ├── Woods_VWC-4.pdf │ │ │ ├── Woods_VWC-4.png │ │ │ ├── within-transects plots-1.pdf │ │ │ └── within-transects plots-1.png │ │ └── transect.coeff.csv ├── Data │ ├── EMU-6-21 │ │ ├── Charlotte-data.csv │ │ ├── FM1.csv │ │ ├── FM2.csv │ │ ├── FM3.csv │ │ ├── FM4.csv │ │ ├── FW1.csv │ │ ├── FW2.csv │ │ ├── FW3.csv │ │ ├── FW4.csv │ │ ├── Marie-data.csv │ │ ├── MaryLee-data.csv │ │ ├── Natalie-data.csv │ │ ├── Roger-data.csv │ │ ├── Santiago-data.csv │ │ ├── Simon-data.csv │ │ ├── Simona-data.csv │ │ ├── fentondata-all.csv │ │ └── ibuttons-combined.csv │ ├── Fenton-soil │ │ └── Fenton_soil_calibration.csv │ ├── emu-sitedata-v2.csv │ └── licor-calibration │ │ └── licor-calibration.csv ├── EMU-Analysis.Rproj ├── Fenton-data-processor.R └── Readme.md ├── EMU-Software ├── Readme.md ├── config.lua ├── init.lua └── measure.lua ├── Firmware ├── README.md └── nodemcu-master-17-modules-2018-09-28-14-42-18-float.bin ├── LICENSE.md ├── Modules ├── Readme.md ├── ads1115 │ ├── Readme.md │ ├── ads1115.lua │ ├── 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