├── .gitignore ├── README.md ├── _config.yml ├── data └── physeq.RData ├── html ├── ERDA.html ├── R.html ├── Rstudio.html ├── alpha.html ├── beta.html ├── cluster.html ├── compositionality.html ├── da.html ├── da2.html ├── dada2.html ├── errors.html ├── ggplot2.html ├── multi.html ├── network.html ├── omegasq.html ├── packages.html ├── pca.html ├── pheatmap.html ├── phyloseq_object.html ├── phyloseq_operations.html ├── prepare.html ├── stats.html ├── superlearn.html ├── venn.html ├── versions.html └── workflow.html ├── img ├── PD.png ├── erda1.png ├── erda10.png ├── erda2.png ├── erda3.png ├── erda4.png ├── erda5.png ├── erda6.png ├── erda7.png ├── erda8.png ├── erda9.png ├── pearson.png ├── spearman_pearson.png └── uf.jpg ├── index.md └── ipynb ├── ERDA.ipynb ├── R.ipynb ├── Rstudio.ipynb ├── alpha.ipynb ├── beta.ipynb ├── cluster.ipynb ├── compositionality.ipynb ├── da.ipynb ├── da2.ipynb ├── dada2.ipynb ├── errors.ipynb ├── ggplot2.ipynb ├── multi.ipynb ├── network.ipynb ├── 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