├── LICENSE ├── README.md ├── SECURITY.md ├── azure-pipelines.yml ├── examples ├── gb1_a60fb_unrelaxed_rank_1_model_5.pdb ├── gb1_a60fb_unrelaxed_rank_1_model_5.pdb.gz ├── gb1s.csv └── some_proteins.fasta ├── requirements.txt ├── scripts ├── extract.py └── extract_mif.py ├── sequence_models ├── __init__.py ├── aaindex.py ├── collaters.py ├── constants.py ├── convolutional.py ├── datasets.py ├── esm.py ├── flip_utils.py ├── gnn.py ├── gvp.py ├── layers.py ├── losses.py ├── metrics.py ├── mixup.py ├── pdb_utils.py ├── pretrained.py ├── samplers.py ├── structure.py ├── trRosetta.py ├── trRosetta_utils.py ├── utils.py └── vae.py ├── setup.py └── tests ├── conv_test.py ├── data_test.py ├── graphmodel_test ├── T1001.a3m ├── T1001.npz ├── T1001_loader.py └── graphmodel_decoder_test ├── loss_test.py ├── pdb_utils_test.py └── vae_test.py /LICENSE: -------------------------------------------------------------------------------- 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