├── Format16STrees.R ├── LICENSE ├── MakeHeatmap.R ├── MakeSpeciesHeatmap.R ├── README.md ├── RibDif.sh ├── RibDif.yml ├── default.primers ├── img ├── Phaeobacter-V3V4_clusterdistri.png ├── Phaeobacter-V3V4_confusionmat.png ├── Pseudoalteromonas-V3V4_clusterdistri.png └── Pseudoalteromonas-V3V4_confusionmat.png ├── in_silico_PCR.pl └── run16sSummary.R /Format16STrees.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/Format16STrees.R -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/LICENSE -------------------------------------------------------------------------------- /MakeHeatmap.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/MakeHeatmap.R -------------------------------------------------------------------------------- /MakeSpeciesHeatmap.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/MakeSpeciesHeatmap.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/README.md -------------------------------------------------------------------------------- /RibDif.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/RibDif.sh -------------------------------------------------------------------------------- /RibDif.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/RibDif.yml -------------------------------------------------------------------------------- /default.primers: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/default.primers -------------------------------------------------------------------------------- /img/Phaeobacter-V3V4_clusterdistri.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/img/Phaeobacter-V3V4_clusterdistri.png -------------------------------------------------------------------------------- /img/Phaeobacter-V3V4_confusionmat.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/img/Phaeobacter-V3V4_confusionmat.png -------------------------------------------------------------------------------- /img/Pseudoalteromonas-V3V4_clusterdistri.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/img/Pseudoalteromonas-V3V4_clusterdistri.png -------------------------------------------------------------------------------- /img/Pseudoalteromonas-V3V4_confusionmat.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/img/Pseudoalteromonas-V3V4_confusionmat.png -------------------------------------------------------------------------------- /in_silico_PCR.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/in_silico_PCR.pl -------------------------------------------------------------------------------- /run16sSummary.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikaells/RibDif/HEAD/run16sSummary.R --------------------------------------------------------------------------------