├── .github └── workflows │ └── main.yml ├── .gitignore ├── .readthedocs.yml ├── LICENSE ├── README.md ├── copia ├── __init__.py ├── bootstrap.py ├── coverage.py ├── data.py ├── diversity.py ├── estimators.py ├── plot.py ├── rarefaction_extrapolation.py ├── simulation.py ├── stats.py └── utils.py ├── datasets ├── dum.csv └── trees.csv ├── docs ├── _config.yml ├── _toc.yml ├── copia.png ├── data.ipynb ├── estimation.ipynb ├── intro.md ├── rarefaction.ipynb ├── references.bib └── requirements.txt ├── notebooks ├── collection.ipynb └── shared_species.ipynb ├── requirements.txt ├── setup.py └── tests ├── test_estimators.py ├── test_shared.py └── test_stats.py /.github/workflows/main.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mikekestemont/copia/HEAD/.github/workflows/main.yml -------------------------------------------------------------------------------- /.gitignore: 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