├── .checking_tools ├── #check_scripts.R └── README_before_check_scripts.md ├── .gitattributes ├── .github └── ISSUE_TEMPLATE │ └── bug_report.md ├── AHM1_ch01 └── AHM1_01.1.R ├── AHM1_ch02 ├── AHM1_02.2.R ├── AHM1_02.4.R ├── AHM1_02.6.R └── AHM1_02.8.R ├── AHM1_ch03 └── AHM1_03_all_sections.R ├── AHM1_ch04 ├── AHM1_04.2.R ├── AHM1_04.3.R └── AHM1_04.5_Exercises.R ├── AHM1_ch05 ├── AHM1_05.03+04.R ├── AHM1_05.05.R ├── AHM1_05.06+07.R ├── AHM1_05.08.R ├── AHM1_05.09.R ├── AHM1_05.10.R ├── AHM1_05.11.R ├── AHM1_05.12.R ├── AHM1_05.13.R └── AHM1_05.14.R ├── AHM1_ch06 ├── AHM1_06.03.R ├── AHM1_06.04.R ├── AHM1_06.05.R ├── AHM1_06.06.R ├── AHM1_06.07.R ├── AHM1_06.08.R ├── AHM1_06.09+10.R ├── AHM1_06.11.R ├── AHM1_06.12.R ├── AHM1_06.13.R └── AHM1_06.16_Exercises.R ├── AHM1_ch07 ├── AHM1_07.03.R ├── AHM1_07.05.R ├── AHM1_07.06.R ├── AHM1_07.07.R ├── AHM1_07.08.1-4.R ├── AHM1_07.08.5.R └── AHM1_07.09.R ├── AHM1_ch08 ├── AHM1_08.02.R ├── AHM1_08.03.R ├── AHM1_08.04.R └── AHM1_08.05.R ├── AHM1_ch09 ├── AHM1_09.02.R ├── AHM1_09.03.R ├── AHM1_09.04.R ├── AHM1_09.05.R ├── AHM1_09.06.R ├── AHM1_09.07.R └── AHM1_09.08.R ├── AHM1_ch10 ├── AHM1_10.01.R ├── AHM1_10.03.R ├── AHM1_10.04.R ├── AHM1_10.05.R ├── AHM1_10.06.R ├── AHM1_10.07.R ├── AHM1_10.07_Bayes.R ├── AHM1_10.08.R ├── AHM1_10.09.R ├── AHM1_10.10.R ├── AHM1_10.11.R ├── AHM1_10.12.R └── AHM1_10.14.R ├── AHM1_ch11 ├── AHM1_11.02.R ├── AHM1_11.03.R ├── AHM1_11.05.R ├── AHM1_11.06.R ├── AHM1_11.07.R ├── AHM1_11.08.R ├── AHM1_11.09.R └── AHM1_11.10.R ├── AHM2_ch01 ├── AHM2_01.02.R ├── AHM2_01.03.R ├── AHM2_01.04.R ├── AHM2_01.05.1.R ├── AHM2_01.05.2.R ├── AHM2_01.05.3.R ├── AHM2_01.05.4.R ├── AHM2_01.06.R ├── AHM2_01.07.1.R ├── AHM2_01.07.1_sims1-9.R ├── AHM2_01.07.1_sims10.R ├── AHM2_01.07.2.R ├── AHM2_01.07.2extra.R ├── AHM2_01.07.3.R ├── AHM2_01.08.1.R └── AHM2_01.08.2.R ├── AHM2_ch02 ├── AHM2_02.02.R ├── AHM2_02.03.0.R ├── AHM2_02.03.1.R ├── AHM2_02.03.2_#noCode.R ├── AHM2_02.03.3+4.R ├── AHM2_02.04.1+2.R ├── AHM2_02.04.3.R ├── AHM2_02.05.1+2.R ├── AHM2_02.05.3.R ├── AHM2_02.05.4_#noCode.R ├── AHM2_02.05.5_#verySlow.R ├── AHM2_02.05.6+7.R ├── AHM2_02.06_#noCode.R ├── AHM2_02.07.R ├── AHM2_02.08.R ├── AHM2_02.09.R └── AHM2_02.10.R ├── AHM2_ch03 ├── AHM2_03.2.R ├── AHM2_03.3.R ├── AHM2_03.4.1-3.R ├── AHM2_03.4.4__WinBUGS.R ├── AHM2_03.4.4_nimble.R ├── AHM2_03.4.5__WinBUGS#crashProne.R └── AHM2_03.4.5_nimble.R ├── AHM2_ch04 ├── AHM2_04.03.R ├── AHM2_04.04.R ├── AHM2_04.05.R ├── AHM2_04.06.R ├── AHM2_04.07.R ├── AHM2_04.08.R ├── AHM2_04.09.1_Crossbills.R ├── AHM2_04.09.2_Crossbills.R ├── AHM2_04.09.3_Crossbills.R ├── AHM2_04.09.4.R ├── AHM2_04.09.5.R ├── AHM2_04.09.6.R ├── AHM2_04.09.7_#noCode.R ├── AHM2_04.10.1.R ├── AHM2_04.10.2.R ├── AHM2_04.10.3_#noCode.R ├── AHM2_04.11.R ├── AHM2_04.12.R └── AHM2_04.13.R ├── AHM2_ch05 ├── AHM2_05.2.R ├── AHM2_05.3.R ├── AHM2_05.4.R ├── AHM2_05.5.R ├── AHM2_05.6.R └── AHM2_05.7.R ├── AHM2_ch06 ├── AHM2_06.2_#noCode.R ├── AHM2_06.3.R ├── AHM2_06.4.1.R ├── AHM2_06.4.2.R ├── AHM2_06.4.3.R ├── AHM2_06.4.4.R └── AHM2_06.4.5.R ├── AHM2_ch07 ├── AHM2_07.2.R ├── AHM2_07.3.R ├── AHM2_07.4.R ├── AHM2_07.5.R ├── AHM2_07.6.R ├── AHM2_07.7.R └── AHM2_07.8_#no_code.R ├── AHM2_ch08 ├── AHM2_08.2.2.R ├── AHM2_08.2.3.R ├── AHM2_08.2.3_CRIplots.R ├── AHM2_08.3.R ├── AHM2_08.4.R ├── AHM2_08.5.1-3.R └── AHM2_08.5.4.R ├── AHM2_ch09 ├── AHM2_09.2.R ├── AHM2_09.2.R_without_RandomFields.R ├── AHM2_09.3.R ├── AHM2_09.3.R_without_RandomFields.R ├── AHM2_09.4.1__WinBUGS.R ├── AHM2_09.4.1__WinBUGS_without_RandomFields.R ├── AHM2_09.4.1_nimble.R ├── AHM2_09.4.1_nimble.R_without_RandomFields.R ├── AHM2_09.4.2.R ├── AHM2_09.4.2.R_without_RandomFields.R ├── AHM2_09.4.3__WinBUGS.R ├── AHM2_09.4.3__WinBUGS_without_RandomFields.R ├── AHM2_09.4.3_nimble.R ├── AHM2_09.4.3_nimble_without_RandomFields.R ├── AHM2_09.5__WinBUGS.R ├── AHM2_09.5_nimble.R ├── AHM2_09.6.1.R ├── AHM2_09.6.1_without_RandomFields.R └── AHM2_09.6.2.R ├── AHM2_ch10 ├── AHM2_10.2.R ├── 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