├── .gitignore ├── .travis.yml ├── CMakeLists.txt ├── COPYING.md ├── INSTALL.md ├── LICENSE.GPL ├── LICENSE.LGPL ├── LICENSE.sequenceParser ├── README.md ├── USAGE.md ├── examples ├── README.md ├── lsFile.py ├── lsFolder.py └── lsSequence.py ├── src ├── CMakeLists.txt └── sequenceParser │ ├── FrameRange.cpp │ ├── FrameRange.hpp │ ├── FrameRange.i │ ├── Item.cpp │ ├── Item.hpp │ ├── Item.i │ ├── ItemStat.cpp │ ├── ItemStat.hpp │ ├── ItemStat.i │ ├── Sequence.cpp │ ├── Sequence.hpp │ ├── Sequence.i │ ├── Sequence.tcc │ ├── common.hpp │ ├── common.i │ ├── detail │ ├── FileNumbers.cpp │ ├── FileNumbers.hpp │ ├── FileStrings.cpp │ ├── FileStrings.hpp │ ├── analyze.cpp │ └── analyze.hpp │ ├── detector.cpp │ ├── detector.hpp │ ├── detector.i │ ├── filesystem.cpp │ ├── filesystem.hpp │ ├── filesystem.i │ ├── sequenceParser.i │ ├── system.hpp │ ├── utils.cpp │ └── utils.hpp ├── test ├── java │ └── StatLibraryTestMain.java └── pyTest │ ├── __init__.py │ ├── testBrowse.py │ ├── testFileDetection.py │ ├── testLink.py │ ├── testMultiPadding.py │ ├── testMultiSequence.py │ ├── testNegativeSequence.py │ ├── testStat.py │ └── testStringSequenceDetection.py └── tools ├── docker └── centos6 │ ├── Dockerfile │ ├── README.md │ └── build.sh └── travis ├── build.sh ├── gcc.generate.coverage.sh ├── gcc.install.coverage.sh └── python.nosetests.sh /.gitignore: -------------------------------------------------------------------------------- 1 | # temporary files 2 | *~ 3 | .*.swp # vim 4 | *.flc # xemacs 5 | .DS_Store # MacOS 6 | Thumbs.db # Windows 7 | 8 | # python 9 | *.pyc 10 | 11 | # ignore scons config file (which is user specific) 12 | /*.sconf 13 | 14 | # removing dist folder : folder receiving the compilation products 15 | /dist 16 | /.dist 17 | 18 | # datas or personal files 19 | /data 20 | /scripts 21 | /*.sh 22 | 23 | # tests 24 | /.tests 25 | 26 | # in case uncrustify.sh script fails, do not commit the temporary file 27 | /files_to_uncrustify_delete_me.txt 28 | 29 | # in case scons configure fails, do not commit the temporary file 30 | /config.log 31 | 32 | # temporary files 33 | /*.xml 34 | /*.dot 35 | /*.log 36 | 37 | /nbproject 38 | 39 | # visual projects 40 | *.sln 41 | *.suo 42 | *.vcxproj 43 | *.vcxproj.* 44 | # visual projects create log files into directories 45 | Debug 46 | Release 47 | Production 48 | 49 | /python/sequenceParser.py 50 | /python/sequenceParser_wrap.cxx 51 | -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- 1 | # Use container-based infrastructure 2 | sudo: required 3 | services: 4 | - docker 5 | 6 | language: cpp 7 | 8 | os: 9 | - linux 10 | 11 | compiler: 12 | - gcc 13 | - clang 14 | 15 | env: 16 | global: 17 | - SEQUENCEPARSER_BUILD=${TRAVIS_BUILD_DIR}/build-sequenceparser 18 | - SEQUENCEPARSER_INSTALL=${TRAVIS_BUILD_DIR}/install-sequenceparser 19 | - CI_NODE_TOTAL=2 20 | matrix: 21 | - PYTHON_VERSION=2.7 22 | - PYTHON_VERSION=3.4 23 | 24 | # This results in a 2×2x2 build matrix. 25 | # Where the variables are: os / compiler / python version 26 | 27 | addons: 28 | apt: 29 | sources: ['boost-latest', 'kalakris-cmake', 'pythonxy-devel'] 30 | packages: 31 | - cmake 32 | - swig 33 | - libboost1.55-all-dev 34 | - python-dev 35 | - python-nose 36 | - python3-dev 37 | - python3-nose 38 | 39 | cache: 40 | # Caching Ubuntu packages 41 | apt: true 42 | 43 | before_script: 44 | - env | sort 45 | - date -u 46 | - uname -a 47 | - if [ ${CC} = "gcc" ]; then ./tools/travis/gcc.install.coverage.sh; fi 48 | 49 | script: 50 | - tools/travis/build.sh 51 | - tools/travis/python.nosetests.sh 52 | 53 | after_success: 54 | - if [ ${CC} = "gcc" ]; then ./tools/travis/gcc.generate.coverage.sh; fi 55 | 56 | after_failure: 57 | - cat ${SEQUENCEPARSER_BUILD}/CMakeFiles/CMakeOutput.log 58 | -------------------------------------------------------------------------------- /CMakeLists.txt: -------------------------------------------------------------------------------- 1 | cmake_minimum_required(VERSION 2.8) 2 | 3 | project(sequenceParser) 4 | 5 | # Get SequenceParser versions 6 | # SEQUENCEPARSER_VERSION_MAJOR 7 | # SEQUENCEPARSER_VERSION_MINOR 8 | # SEQUENCEPARSER_VERSION_MICRO 9 | # SEQUENCEPARSER_VERSION 10 | file(STRINGS "src/sequenceParser/common.hpp" _avtranscoder_VERSION_HPP_CONTENTS REGEX "#define SEQUENCEPARSER_VERSION_") 11 | foreach(v MAJOR MINOR MICRO) 12 | if("${_avtranscoder_VERSION_HPP_CONTENTS}" MATCHES "#define SEQUENCEPARSER_VERSION_${v} ([0-9]+)") 13 | set(SEQUENCEPARSER_VERSION_${v} "${CMAKE_MATCH_1}") 14 | else() 15 | set(SEQUENCEPARSER_RETRIEVE_VERSION_FAILED 1) 16 | endif() 17 | endforeach() 18 | unset(_avtranscoder_VERSION_HPP_CONTENTS) 19 | 20 | set(SEQUENCEPARSER_VERSION "${SEQUENCEPARSER_VERSION_MAJOR}.${SEQUENCEPARSER_VERSION_MINOR}.${SEQUENCEPARSER_VERSION_MICRO}") 21 | 22 | if(SEQUENCEPARSER_RETRIEVE_VERSION_FAILED) 23 | message(SEND_ERROR "Failed to retrieve SequenceParser version: ${SEQUENCEPARSER_VERSION}") 24 | else() 25 | message(STATUS "SequenceParser version is ${SEQUENCEPARSER_VERSION}") 26 | endif() 27 | 28 | # Diplay commands being ran by CMake 29 | set(CMAKE_VERBOSE_MAKEFILE OFF) 30 | 31 | # The install rule does not depend on all, i.e. everything will not be built before installing 32 | set(CMAKE_SKIP_INSTALL_ALL_DEPENDENCY TRUE) 33 | 34 | # CPP flags on debug / release mode 35 | if(MSVC) 36 | set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} /MTd") 37 | set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} /MT") 38 | else() 39 | set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -fPIC -g") 40 | set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -fPIC -O3") 41 | endif() 42 | 43 | # CPP flag to create code coverage report 44 | if(SEQUENCEPARSER_COVERAGE) 45 | message("Add coverage build option.") 46 | set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} --coverage") 47 | endif() 48 | 49 | # Build library 50 | add_subdirectory(src) 51 | -------------------------------------------------------------------------------- /COPYING.md: -------------------------------------------------------------------------------- 1 | **sequenceParser** project is published under multi-licensing, so you can choose between: 2 | >* sequenceParser Public License, version 1 (**less restrictive version of LGPL**), see [LICENSE.sequenceParser](LICENSE.sequenceParser) file. 3 | >* GNU Lesser General Public License, version 2.1 (**LGPL**), see [LICENSE.LGPL](LICENSE.LGPL) file. 4 | >* GNU General Public License, version 2 (**GPL**), see [LICENSE.GPL](LICENSE.GPL) file. 5 | 6 | This multi-licensing scheme applies to the whole project. 7 | -------------------------------------------------------------------------------- /INSTALL.md: -------------------------------------------------------------------------------- 1 | # How to install sequenceParser 2 | 3 | #### External dependencies 4 | * Boost 5 | Version 1.48.0 or upper 6 | Components regex, system, filesystem, locale 7 | 8 | * Swig 9 | Version 1.3.36 or upper 10 | (for Python/Java Binding) 11 | 12 | #### To build 13 | SequenceParser uses CMake build system. 14 | ``` 15 | cmake . 16 | make 17 | make install 18 | ``` 19 | 20 | #### To use specific library 21 | ###### Boost 22 | ``` 23 | cmake . -DBOOST_ROOT=/path/to/your/boost/install 24 | ``` 25 | 26 | #### Tested compilers 27 | ###### Linux 28 | * GCC 4.4.1 on OpenSUSE 11.2 64bits 29 | * GCC 4.6.2 on Fedora 20 64bits 30 | 31 | ###### MacOS 32 | 33 | ###### Windows 34 | 35 | #### Launch tests 36 | ###### Python tests 37 | Using nosetests: 38 | ``` 39 | nosetests test/pyTest 40 | ``` 41 | -------------------------------------------------------------------------------- /LICENSE.GPL: -------------------------------------------------------------------------------- 1 | GNU GENERAL PUBLIC LICENSE 2 | Version 2, June 1991 3 | 4 | Copyright (C) 1989, 1991 Free Software Foundation, Inc., 5 | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 6 | Everyone is permitted to copy and distribute verbatim copies 7 | of this license document, but changing it is not allowed. 8 | 9 | Preamble 10 | 11 | The licenses for most software are designed to take away your 12 | freedom to share and change it. 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Of course, the commands you use may 322 | be called something other than `show w' and `show c'; they could even be 323 | mouse-clicks or menu items--whatever suits your program. 324 | 325 | You should also get your employer (if you work as a programmer) or your 326 | school, if any, to sign a "copyright disclaimer" for the program, if 327 | necessary. Here is a sample; alter the names: 328 | 329 | Yoyodyne, Inc., hereby disclaims all copyright interest in the program 330 | `Gnomovision' (which makes passes at compilers) written by James Hacker. 331 | 332 | , 1 April 1989 333 | Ty Coon, President of Vice 334 | 335 | This General Public License does not permit incorporating your program into 336 | proprietary programs. If your program is a subroutine library, you may 337 | consider it more useful to permit linking proprietary applications with the 338 | library. If this is what you want to do, use the GNU Lesser General 339 | Public License instead of this License. 340 | -------------------------------------------------------------------------------- /LICENSE.sequenceParser: -------------------------------------------------------------------------------- 1 | sequenceParser Public License 2 | Version 1.0, October 17, 2011 3 | 4 | sequenceParser license is the GNU Lesser Public License (LGPL) version 2.1, with some exclusions regarding “derived work” definition, see below. Put simply, it’s a less restrictive version of LGPL. 5 | 6 | Under the LGPL you may use sequenceParser for any purpose you wish, and modify it if you require, as long as you: 7 | 1. Pass on the (modified) sequenceParser source code with your software, with original copyrights intact. 8 | a. If you distribute electronically, the source can be a separate download (either from your own site if you modified sequenceParser, or to the sequenceParser site if you used an unmodified version) – just include a link in your documentation. 9 | b. If you distribute physical media, the sequenceParser source code that you used to build your application should be included on that media. 10 | 2. Make it clear where you have customised it. 11 | 12 | In addition to the LGPL license text, the following exclusions and clarifications to the LGPL conditions apply to sequenceParser: 13 | 1. Making modifications to sequenceParser configuration files, build scripts and configuration headers in order to create a customised build setup of sequenceParser with the otherwise unmodified source code, does not constitute a derived work. 14 | 2. Building against sequenceParser headers which have inlined code does not constitute a derived work. 15 | 3. Code which inherits sequenceParser classes outside of the sequenceParser libraries does not form a derived work. 16 | 4. Statically linking the sequenceParser libraries into a user application does not make the user application a derived work. 17 | 18 | As per the terms of the LGPL, a “derived work” is one for which you have to distribute source code for, so when the clauses above define something as not a derived work, it means you don’t have to distribute source code for it. However, the original sequenceParser source code with all modifications must always be made available. 19 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # SequenceParser 2 | 3 | SequenceParser library is a library to detect sequences, files and folders. 4 | 5 | [![Build Status](https://travis-ci.org/mikrosimage/sequenceparser.svg?branch=master)](https://travis-ci.org/mikrosimage/sequenceparser) 6 | [![Coverage Status](https://coveralls.io/repos/github/mikrosimage/sequenceparser/badge.svg?branch=develop)](https://coveralls.io/github/mikrosimage/sequenceparser?branch=develop) 7 | 8 | 9 | #### Basics 10 | * C++ library 11 | * Java and Python bindings generated with SWIG 12 | * multiplateform (Linux, MAC, Windows) 13 | * the main idea is to handle ambiguous cases of sequence detection with options when browse disk 14 | 15 | #### Licence 16 | See [**COPYING.md**](COPYING.md) 17 | 18 | #### How to use 19 | See [**USAGE.md**](USAGE.md) 20 | 21 | #### Compilation 22 | See [**INSTALL.md**](INSTALL.md) 23 | -------------------------------------------------------------------------------- /USAGE.md: -------------------------------------------------------------------------------- 1 | # How to use sequenceParser 2 | 3 | ## Definitions 4 | * _Sequence_: a collection of files / links with a common prefix and suffix around a varying number. 5 | * _File_: a file alone which is not included in a file sequence. 6 | * _Link_: a link alone which is not included in a file sequence. 7 | * _Folder_: All folders. Folders are never considered as a sequence. 8 | 9 | ## API 10 | The original code is in C++, but almost all the methods are translated into python/java without any changes. 11 | So a good way to start is to have a look at the [C++ code](src/sequenceParser) (since the generated python/java code is ugly). 12 | 13 | In the sake of brevity, the example code of the following section is written in python. 14 | 15 | #### Interact with the filesystem 16 | The entry points to interact with the filesystem are the [__browse__](src/sequenceParser/filesystem.hpp) methods. 17 | ```python 18 | items = sequenceParser.browse("/path/to/browse") 19 | ``` 20 | These methods return a list of __Item__. 21 | All the rest of your code will consist of manipulating those __Item__ objects, without any other interaction with the filesystem. 22 | 23 | #### Item 24 | All elements in the filesystem (folder, file, link...) are consider as [__Item__](src/sequenceParser/Item.hpp) in the library. 25 | The __Item__ handles general attributes such as the path, the name, and the type of the element. 26 | To get the type of an __Item__: 27 | ```python 28 | if item.getType() == sequenceParser.eTypeFolder: 29 | print "This is a folder!" 30 | elif item.getType() == sequenceParser.eTypeFile: 31 | print "This is a file!" 32 | elif item.getType() == sequenceParser.eTypeSequence: 33 | print "This is a sequence!" 34 | elif item.getType() == sequenceParser.eTypeLink: 35 | print "This is a link!" 36 | else 37 | raise ValueError("Unknown type of item!") 38 | ``` 39 | 40 | #### ItemStat 41 | From an __Item__, you can create an [__ItemStat__](src/sequenceParser/ItemStat.hpp) to have access to system information of the element (such as size on disk, rights, access time...). 42 | ```python 43 | itemStat = sequenceParser.ItemStat(item) 44 | ``` 45 | 46 | #### Sequence 47 | If the type of an __Item__ is a [__Sequence__](src/sequenceParser/Sequence.hpp), it means that the library detected a common pattern that represents several files or links. 48 | ```python 49 | if item.getType() == sequenceParser.eTypeSequence: 50 | sequence = item.getSequence() 51 | else: 52 | pass 53 | ``` 54 | 55 | The __Sequence__ object handles all the information you expect about a sequence of elements. 56 | :warning: It does not contain parent folder notion (but its corresponding __Item__ does). 57 | * general information 58 | ```python 59 | firstFrame = sequence.getFirstTime() 60 | lastFrame = sequence.getLastTime() 61 | padding = sequence.getMaxPadding() 62 | ``` 63 | 64 | * frame ranges 65 | ```python 66 | for range in sequence.getFrameRanges(): 67 | # do something... 68 | pass 69 | ``` 70 | 71 | * files in the sequence 72 | ```python 73 | nbFiles = sequence.getNbFiles() 74 | nbMissingFiles = sequence.getNbMissingFiles() # in case of holes 75 | 76 | # print absolute filepath of all files 77 | for filePath in sequence.getFiles(): 78 | print filePath 79 | ``` 80 | 81 | #### I don't need any browse: I known where is my sequence! 82 | And you are right! If you known exactly the path, the name and the padding of your sequence, no browse is needed. Instead, you can manually create a sequence from a given path: 83 | ```python 84 | newSequence = sequenceParser.Sequence() # empty sequence 85 | isSequence = sequenceParser.browseSequence(newSequence, "/path/of/sequence-###.jpg") 86 | if isSequence: 87 | print("I have my sequence!") 88 | ``` 89 | 90 | #### A list of Item instead of a Sequence 91 | Sometimes you have a list of filesystem elements, and you would like to manipulate them as separate __Item__ instead of a single __Sequence__. 92 | ```python 93 | if item.getType() == sequenceParser.eTypeSequence: 94 | # explode the sequence into atomic filesystem element 95 | files = item.explode() 96 | for f in files: 97 | # do something... 98 | pass 99 | else: 100 | ``` 101 | 102 | #### Tell me a story about padding... 103 | To manage ambiguous cases of sequence detection, the sequenceParser library makes the difference between a fixed, variable and an unknown padding. 104 | 105 | * Fixed padding 106 | The most common and easiest case: 107 | * seq.001.jpg 108 | * seq.002.jpg 109 | * seq.002.jpg 110 | ```python 111 | fixedPadding = sequence.getFixedPadding() # 3 112 | maxPadding = sequence.getMaxPadding() # 3 113 | print sequence # seq.###.jpg [1:3] 114 | ``` 115 | 116 | * Variable padding 117 | When not all frames have the same padding: 118 | * seq.101.jpg 119 | * seq.100.jpg 120 | * seq.99.jpg 121 | ```python 122 | fixedPadding = sequence.getFixedPadding() # 0 123 | maxPadding = sequence.getMaxPadding() # 2 124 | print sequence # seq.@.jpg [99:101] 125 | ``` 126 | 127 | * Unknown padding 128 | When no frame begins with a '0' padding character: 129 | * seq.101.jpg 130 | * seq.102.jpg 131 | * seq.103.jpg 132 | ```python 133 | fixedPadding = sequence.getFixedPadding() # 0 134 | maxPadding = sequence.getMaxPadding() # 3 135 | print sequence # seq.@.jpg [101:103] 136 | ``` 137 | 138 | #### Browse more! 139 | When you browse the disks, you have access to several arguments to specify what you are looking for. 140 | * Detection options 141 | [__eDetectionXXX__](src/sequenceParser/common.hpp) is an enum used to choose how to consider sequences. 142 | * Filters 143 | A list of strings used to limit the search. 144 | 145 | ```python 146 | # Get all dpx files inside "/path/to/browse", and detect sequence with the following rules: 147 | # - at least 2 files to detect a sequence (eDetectionDefault) 148 | # - ignore dot files (eDetectionDefault) 149 | # - detect negative numbers (instead of detecting "-" as a non-digit character) (eDetectionNegative) 150 | items = sequenceParser.browse("/path/to/browse", sequenceParser.eDetectionDefault | sequenceParser.eDetectionNegative, "*.dpx") 151 | ``` 152 | 153 | For more information, see the [__python examples__](examples). 154 | 155 | ## Environment 156 | #### In C++ 157 | Set environment: 158 | ```bash 159 | export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/boost/lib:/path/to/sequenceParser/lib 160 | export PATH=$PATH:/path/to/sequenceParser/bin 161 | ``` 162 | 163 | #### In Java 164 | Add argument to the JVM: 165 | ```bash 166 | -Djava.library.path=/path/to/sequenceParser/lib/java 167 | ``` 168 | Set environment: 169 | ```bash 170 | export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/boost/lib 171 | ``` 172 | 173 | #### In Python 174 | Set environment: 175 | ```bash 176 | export PYTHONPATH=$PYTHONPATH:/path/to/sequenceParser/lib/python/site-packages/ 177 | export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/boost/lib 178 | ``` 179 | 180 | ## Projects which uses sequenceParser 181 | #### TuttleOFX 182 | TuttleOFX is a library to connect and batch operations with OpenFx plugins. It comes with a set of plugins that allows you to batch process on movies and file sequences. 183 | TuttOFX uses sequenceParser in: 184 | * [tuttleIOPluginLib](https://github.com/tuttleofx/TuttleOFX/tree/develop/libraries/tuttle/src/tuttle/ioplugin/context), its common library for io plugins. 185 | * [sam](https://github.com/tuttleofx/TuttleOFX/tree/develop/applications/sam), its command line to process sequences. 186 | 187 | #### Dude2 188 | Dude2 is a disk usage monitoring tool. 189 | Dude2 uses sequenceParser in: 190 | * its [incremental scan](https://github.com/mikrosimage/Dude2/tree/develop/FileSystemScanner/src/eu/mikrosimage/filesystem/scanner). 191 | -------------------------------------------------------------------------------- /examples/README.md: -------------------------------------------------------------------------------- 1 | # python binding scripts samples 2 | 3 | lsFile.py 4 | ------------ 5 | List files in a given directory (current directory if no argument). 6 | 7 | lsFolder.py 8 | ------------ 9 | List folders in a given directory (current directory if no argument). 10 | 11 | lsSequence.py 12 | ------------ 13 | List sequences in a given directory (current directory if no argument). 14 | -------------------------------------------------------------------------------- /examples/lsFile.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/python 2 | # -*- coding: utf-8 -*- 3 | 4 | import os, sys 5 | from pySequenceParser import sequenceParser as sq 6 | 7 | if len(sys.argv) > 2: 8 | print( 'lsFile takes only one path.' ) 9 | sys.exit() 10 | 11 | path = os.curdir 12 | if len(sys.argv) == 2 : 13 | path = sys.argv[1] 14 | 15 | items = sq.browse( path ) 16 | files = [f for f in items if f.getType() == sq.eTypeFile] 17 | 18 | for f in files : 19 | print f 20 | -------------------------------------------------------------------------------- /examples/lsFolder.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/python 2 | # -*- coding: utf-8 -*- 3 | 4 | import os, sys 5 | from pySequenceParser import sequenceParser as sq 6 | 7 | if len(sys.argv) > 2: 8 | print( 'lsFolder takes only one path.' ) 9 | sys.exit() 10 | 11 | path = os.curdir 12 | if len(sys.argv) == 2 : 13 | path = sys.argv[1] 14 | 15 | items = sq.browse( path ) 16 | dirs = [d for d in items if d.getType() == sq.eTypeFolder] 17 | 18 | for d in dirs : 19 | print d 20 | 21 | -------------------------------------------------------------------------------- /examples/lsSequence.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/python 2 | # -*- coding: utf-8 -*- 3 | 4 | import os, sys 5 | from pySequenceParser import sequenceParser as sq 6 | 7 | if len(sys.argv) > 2: 8 | print( 'lsSequence takes only one path.' ) 9 | sys.exit() 10 | 11 | path = os.curdir 12 | if len(sys.argv) == 2 : 13 | path = sys.argv[1] 14 | 15 | items = sq.browse( path ) 16 | sequences = [f for f in items if f.getType() == sq.eTypeSequence] 17 | 18 | for s in sequences : 19 | print s.getSequence().getFixedPadding() 20 | print s.getSequence().getMaxPadding() 21 | print s.getSequence() 22 | print s.getSequence().getFilenameWithPrintfPattern() 23 | 24 | -------------------------------------------------------------------------------- /src/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | file(GLOB_RECURSE SEQUENCEPARSER_SRC_FILES "sequenceParser/*.cpp" "sequenceParser/*.hpp") 2 | 3 | # Find boost 4 | find_package(Boost 1.53.0 5 | COMPONENTS regex system filesystem locale REQUIRED) 6 | if(NOT Boost_FOUND) 7 | message(FATAL_ERROR "please set BOOST_ROOT environment variable to a proper boost install") 8 | endif(NOT Boost_FOUND) 9 | 10 | # Create 'sequenceparser' static lib 11 | add_library(sequenceparser-static STATIC ${SEQUENCEPARSER_SRC_FILES}) 12 | set_target_properties(sequenceparser-static PROPERTIES LINKER_LANGUAGE CXX) 13 | set_target_properties(sequenceparser-static PROPERTIES OUTPUT_NAME sequenceParser) 14 | target_include_directories(sequenceparser-static PUBLIC ${CMAKE_CURRENT_SOURCE_DIR} ${Boost_INCLUDE_DIRS}) 15 | target_link_libraries(sequenceparser-static ${Boost_LIBRARIES}) 16 | 17 | # Create 'sequenceparser' shared lib 18 | add_library(sequenceparser-shared SHARED ${SEQUENCEPARSER_SRC_FILES}) 19 | set_target_properties(sequenceparser-shared PROPERTIES LINKER_LANGUAGE CXX) 20 | set_target_properties(sequenceparser-shared PROPERTIES OUTPUT_NAME sequenceParser) 21 | set_target_properties(sequenceparser-shared PROPERTIES SOVERSION ${SEQUENCEPARSER_VERSION_MAJOR}) 22 | set_target_properties(sequenceparser-shared PROPERTIES VERSION ${SEQUENCEPARSER_VERSION}) 23 | target_include_directories(sequenceparser-shared PUBLIC ${CMAKE_CURRENT_SOURCE_DIR} ${Boost_INCLUDE_DIRS}) 24 | target_link_libraries(sequenceparser-shared ${Boost_LIBRARIES}) 25 | 26 | ### Install sequenceParser libs and include 27 | install( 28 | DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/sequenceParser" 29 | DESTINATION "include" 30 | FILES_MATCHING 31 | PATTERN "*.hpp" 32 | PATTERN "*.tcc" 33 | PATTERN "*.i" 34 | ) 35 | install(TARGETS sequenceparser-static DESTINATION lib/ OPTIONAL) 36 | install(TARGETS sequenceparser-shared DESTINATION lib/ OPTIONAL) 37 | 38 | ### SWIG 39 | find_package(SWIG) 40 | if(SWIG_FOUND) 41 | # Load Modules/UseSWIG.cmake 42 | include(${SWIG_USE_FILE}) 43 | 44 | # Configure Swig 45 | set(CMAKE_SWIG_OUTDIR "${CMAKE_CURRENT_BINARY_DIR}/sequenceParser") 46 | set(SEQUENCEPARSER_BINDING_FILE "sequenceParser/sequenceParser.i") 47 | set_source_files_properties(${SEQUENCEPARSER_BINDING_FILE} PROPERTIES CPLUSPLUS ON) 48 | 49 | # Swig flags 50 | set(COMMON_SWIG_FLAGS -c++ -fcompact -small -O -Werror) 51 | 52 | ### PYTHON BINDING 53 | find_package(PythonLibs ${SEQUENCEPARSER_PYTHON_VERSION}) 54 | if(PYTHONLIBS_FOUND) 55 | include_directories(${PYTHON_INCLUDE_PATH}) 56 | 57 | # Swig flags 58 | if(${PYTHONLIBS_VERSION_STRING} VERSION_GREATER "3") 59 | set(CMAKE_SWIG_FLAGS ${COMMON_SWIG_FLAGS} -py3) 60 | endif() 61 | 62 | # Create '_sequenceparser' shared lib (python) 63 | swig_add_module(sequenceparser-py python ${SEQUENCEPARSER_BINDING_FILE}) 64 | # For Python binding, need to compile the wrapper into a lib called "_.so" 65 | set_target_properties(${SWIG_MODULE_sequenceparser-py_REAL_NAME} PROPERTIES OUTPUT_NAME _sequenceParser) 66 | if(NOT APPLE AND NOT WIN32) 67 | set_target_properties(${SWIG_MODULE_sequenceparser-py_REAL_NAME} PROPERTIES SOVERSION ${SEQUENCEPARSER_VERSION_MAJOR}) 68 | set_target_properties(${SWIG_MODULE_sequenceparser-py_REAL_NAME} PROPERTIES VERSION ${SEQUENCEPARSER_VERSION}) 69 | endif() 70 | # Force the library to look in the project lib folder relatively 71 | if(APPLE) 72 | set_target_properties(${SWIG_MODULE_sequenceparser-py_REAL_NAME} PROPERTIES INSTALL_RPATH "@loader_path/../../..") 73 | else() 74 | set_target_properties(${SWIG_MODULE_sequenceparser-py_REAL_NAME} PROPERTIES INSTALL_RPATH "$ORIGIN/../../..:$ORIGIN") 75 | endif() 76 | swig_link_libraries(sequenceparser-py sequenceparser-shared ${PYTHON_LIBRARIES}) 77 | 78 | # Get path to install python binding 79 | string(SUBSTRING ${PYTHONLIBS_VERSION_STRING} 0 3 PYTHON_VERSION) 80 | set(SEQUENCEPARSER_PYTHON_MODULE_OUTPUT_DIR "lib/python${PYTHON_VERSION}/site-packages/pySequenceParser/") 81 | 82 | # Install python interface 83 | set(SEQUENCEPARSER_PYTHON_BINDING_FILE "${CMAKE_SWIG_OUTDIR}/sequenceParser.py") 84 | install( 85 | FILES ${SEQUENCEPARSER_PYTHON_BINDING_FILE} ${SEQUENCEPARSER_PYTHON_INIT_FILE} 86 | DESTINATION ${SEQUENCEPARSER_PYTHON_MODULE_OUTPUT_DIR} 87 | OPTIONAL 88 | ) 89 | # Install python lib and __init__.py files 90 | install(TARGETS ${SWIG_MODULE_sequenceparser-py_REAL_NAME} DESTINATION "${SEQUENCEPARSER_PYTHON_MODULE_OUTPUT_DIR}" OPTIONAL) 91 | install(CODE "file(WRITE ${CMAKE_INSTALL_PREFIX}/${SEQUENCEPARSER_PYTHON_MODULE_OUTPUT_DIR}/__init__.py)") 92 | else() 93 | message("PYTHON not found, will not build python binding.") 94 | endif() 95 | 96 | ### JAVA BINDING 97 | find_package(Java) 98 | find_package(JNI) 99 | if(JAVA_FOUND AND JNI_FOUND) 100 | include(UseJava) 101 | include_directories(${JAVA_INCLUDE_PATH}) 102 | include_directories(${JNI_INCLUDE_DIRS}) 103 | 104 | # Swig flags 105 | set(CMAKE_SWIG_FLAGS ${COMMON_SWIG_FLAGS} -package org.sequenceparser) 106 | 107 | # Create 'sequenceparser-java' shared lib 108 | swig_add_module(sequenceparser-java java ${SEQUENCEPARSER_BINDING_FILE}) 109 | set_target_properties(${SWIG_MODULE_sequenceparser-java_REAL_NAME} PROPERTIES OUTPUT_NAME sequenceParser-java) 110 | if(NOT APPLE AND NOT WIN32) 111 | set_target_properties(${SWIG_MODULE_sequenceparser-java_REAL_NAME} PROPERTIES SOVERSION ${SEQUENCEPARSER_VERSION_MAJOR}) 112 | set_target_properties(${SWIG_MODULE_sequenceparser-java_REAL_NAME} PROPERTIES VERSION ${SEQUENCEPARSER_VERSION}) 113 | endif() 114 | # Force the library to look in the project lib folder relatively 115 | if(APPLE) 116 | set_target_properties(${SWIG_MODULE_sequenceparser-java_REAL_NAME} PROPERTIES INSTALL_RPATH "@loader_path/..") 117 | else() 118 | set_target_properties(${SWIG_MODULE_sequenceparser-java_REAL_NAME} PROPERTIES INSTALL_RPATH "$ORIGIN/..:$ORIGIN") 119 | endif() 120 | swig_link_libraries(sequenceparser-java sequenceparser-shared) 121 | 122 | # Post build of java binding : compile java files (generate class files) and create jar 123 | set(SEQUENCEPARSER_JAVA_OUTPUT_PATH "${PROJECT_BINARY_DIR}/src/sequenceParser") 124 | set(SEQUENCEPARSER_JAVA_CLASS_OUTPUT_PATH "${SEQUENCEPARSER_JAVA_OUTPUT_PATH}/target") 125 | set(SEQUENCEPARSER_JAR_PATH "${PROJECT_BINARY_DIR}/src") 126 | set(SEQUENCEPARSER_JAR_NAME "sequenceparser-${SEQUENCEPARSER_VERSION}.jar") 127 | execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${SEQUENCEPARSER_JAVA_CLASS_OUTPUT_PATH}) 128 | 129 | ADD_CUSTOM_COMMAND( 130 | TARGET sequenceparser-java 131 | POST_BUILD 132 | COMMAND ${Java_JAVAC_EXECUTABLE} "-d" ${SEQUENCEPARSER_JAVA_CLASS_OUTPUT_PATH} "\"${SEQUENCEPARSER_JAVA_OUTPUT_PATH}\"/*.java" 133 | COMMAND ${Java_JAR_EXECUTABLE} cf ${SEQUENCEPARSER_JAR_NAME} "-C" ${SEQUENCEPARSER_JAVA_CLASS_OUTPUT_PATH} "." 134 | ) 135 | 136 | # Install java lib and jar files 137 | install(TARGETS ${SWIG_MODULE_sequenceparser-java_REAL_NAME} DESTINATION "lib/java" OPTIONAL) 138 | install(FILES ${SEQUENCEPARSER_JAR_PATH}/${SEQUENCEPARSER_JAR_NAME} DESTINATION "share/java/" OPTIONAL) 139 | else() 140 | message("JAVA not found, will not build java binding.") 141 | endif() 142 | 143 | else(SWIG_FOUND) 144 | message("SWIG not found, will not build python and java bindings.") 145 | 146 | endif(SWIG_FOUND) 147 | -------------------------------------------------------------------------------- /src/sequenceParser/FrameRange.cpp: -------------------------------------------------------------------------------- 1 | #include "FrameRange.hpp" 2 | 3 | #include 4 | #include 5 | 6 | 7 | namespace sequenceParser { 8 | 9 | std::string FrameRange::string() const 10 | { 11 | std::ostringstream ss; 12 | ss << *this; 13 | return ss.str(); 14 | } 15 | 16 | std::ostream& operator<<(std::ostream& os, const FrameRange& range) 17 | { 18 | os << range.first; 19 | if( range.first == range.last ) 20 | return os; 21 | os << ":" << range.last; 22 | 23 | if( range.step != 1 ) 24 | os << "x" << range.step; 25 | 26 | return os; 27 | } 28 | 29 | std::ostream& operator<<(std::ostream& os, const std::vector& frameRanges) 30 | { 31 | // to ensure that "ranges" size is > 0 as we use unsigned 32 | if( frameRanges.empty() ) 33 | return os; 34 | 35 | std::vector::const_iterator it = frameRanges.begin(); 36 | for( std::size_t i = 0; i < frameRanges.size() - 1; ++i, ++it ) 37 | { 38 | os << *it << ","; 39 | } 40 | os << *it; 41 | return os; 42 | } 43 | 44 | std::ostream& operator<<(std::ostream& os, const FrameRangesView& frameRanges) 45 | { 46 | os << frameRanges.getFrameRanges(); 47 | return os; 48 | } 49 | 50 | std::vector extractFrameRanges( const std::vector