├── .gitignore ├── Dockerfile ├── LICENSE.md ├── Porter5.py ├── README.md ├── example ├── 2FLGA.fasta ├── 2FLGA.ss3 └── 2FLGA.ss8 ├── multiple_fasta.py ├── scripts ├── Predict_BRNN │ ├── BRNN.cxx │ ├── BRNN.h │ ├── BRNN.o │ ├── BRNNr.cxx │ ├── BRNNr.h │ ├── Layer.cxx │ ├── Layer.h │ ├── Layer.o │ ├── MModel.cxx │ ├── MModel.h │ ├── MModel.o │ ├── Model.cxx │ ├── Model.h │ ├── NN.cxx │ ├── NN.h │ ├── NN.o │ ├── NNt.cxx │ ├── NNt.h │ ├── NNt.o │ ├── Predict │ ├── Predict_probs.cxx │ ├── Predict_probs.o │ ├── Sequence.h │ ├── makefile │ ├── models │ │ ├── SS3 │ │ │ ├── trained-0.model25Fv7 │ │ │ ├── trained-0.model25Fv78 │ │ │ ├── trained-0.model25Fv8 │ │ │ ├── trained-0.model30Ffatv7 │ │ │ ├── trained-0.model30Ffatv8 │ │ │ ├── trained-0.model30Fv7 │ │ │ └── trained-0.model30Fv8 │ │ └── SS8 │ │ │ ├── trained-0.modelHH30Ffat │ │ │ ├── trained-0.modelHH35F │ │ │ ├── trained-0.modelHH36F │ │ │ ├── trained-0.modelHHpsi30Ffat │ │ │ ├── trained-0.modelPSI30Ffat │ │ │ ├── trained-0.modelPSI35F │ 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