├── .gitignore ├── LICENSE ├── README.md ├── data ├── Example RMT files │ ├── Arabidopsis_thaliana.rmt │ ├── Danio_rerio.rmt │ ├── Drosophila_melanogaster.rmt │ ├── Homo_sapiens.rmt │ └── Mus_musculus.rmt ├── images │ └── distplot.png └── scripts │ └── gff_genes_2_rmt.py ├── mutation_simulator ├── __init__.py ├── __main__.py ├── _version.py ├── argument_parser.py ├── bedpe_writer.py ├── colors.py ├── defaults.py ├── fasta_writer.py ├── it_mutator.py ├── mut_types.py ├── mutator.py ├── rmt.py ├── util.py └── vcf_writer.py ├── performance-comparison.md ├── pyproject.toml └── rmt-docs.pdf /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mkpython3/Mutation-Simulator/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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