├── .clang-format ├── .codecov.yml ├── .dockerignore ├── .gitattributes ├── .github └── workflows │ ├── ci.yml │ └── deploy.yml ├── .gitignore ├── CMakeLists.txt ├── Dockerfile ├── LICENSE.txt ├── MANIFEST.in ├── Makefile ├── README.md ├── apps ├── check_multithreading.cpp ├── create_model.cpp ├── delphi_rest_api.cpp ├── mat_exp_timer.cpp ├── sandbox_tester.cpp └── timer.cpp ├── cmake ├── FindGraphviz.cmake └── FindSQLite3.cmake ├── data ├── README.md └── config.json ├── delphi ├── .gitignore ├── GrFN │ ├── README.md │ ├── __init__.py │ ├── linking.py │ ├── networks.py │ ├── sensitivity.py │ ├── utils.py │ └── visualization.py ├── __init__.py ├── apps │ ├── CodeExplorer │ │ ├── .gitignore │ │ ├── .matplotlibrc │ │ ├── Dockerfile │ │ ├── README.md │ │ ├── __init__.py │ │ ├── app.py │ │ ├── app.wsgi │ │ ├── cyjs.py │ │ ├── grfn_with_alignments.json │ │ ├── petasce_with_alignments.json │ │ ├── petasce_with_alignments_2.json │ │ ├── requirements.txt │ │ ├── run.sh │ │ ├── setup_sista_vm.sh │ │ ├── static │ │ │ ├── codemirror │ │ │ │ ├── lib │ │ │ │ │ ├── codemirror.css │ │ │ │ │ └── codemirror.js │ │ │ │ ├── mode │ │ │ │ │ └── fortran │ │ │ │ │ │ └── fortran.js │ │ │ │ └── theme │ │ │ │ │ └── monokai.css │ │ │ ├── cytoscape-panzoom.css │ │ │ ├── cytoscape-panzoom.js │ │ │ ├── cytoscape-popper.js │ │ │ ├── example_programs │ │ │ │ ├── SIR-simple.f │ │ │ │ ├── cropYield.f │ │ │ │ ├── petASCE.f │ │ │ │ └── petPT.f │ │ │ ├── hyde.css │ │ │ ├── ml4ai.png │ │ │ ├── poole.css │ │ │ ├── style.css │ │ │ ├── syntax.css │ │ │ ├── tippy.css │ │ │ └── ua_logo.png │ │ ├── surface_plots.py │ │ └── templates │ │ │ ├── about.html │ │ │ ├── cyjs.js │ │ │ ├── editor.js │ │ │ ├── head.html │ │ │ ├── help.html │ │ │ ├── index.html │ │ │ ├── modelAnalysis.html │ │ │ ├── navbar.html │ │ │ └── sensitivityAnalysis.html │ ├── __init__.py │ └── rest_api │ │ ├── .gitignore │ │ ├── __init__.py │ │ ├── api.py │ │ ├── app.wsgi │ │ ├── config.py │ │ ├── make_plots.py │ │ ├── models.py │ │ ├── run.py │ │ ├── setup_sista_vm.sh │ │ └── test_script.sh ├── cpp │ └── __init__.py ├── db.py ├── evaluation.py ├── jupyter_tools.py ├── paths.py ├── plot_delphi_results_offline.py ├── plotter.py ├── translators │ ├── GrFN2WiringDiagram │ │ ├── SIR-Gillespie-SD__alt.f │ │ ├── SIR-simple.f │ │ ├── SIR-simple__functions.jl │ │ ├── SIR-simple__wiring.jl │ │ ├── example_GrFN2WD_translation.ipynb │ │ └── translate.py │ ├── __init__.py │ └── for2py │ │ ├── .gitignore │ │ ├── README.md │ │ ├── __init__.py │ │ ├── arrays.py │ │ ├── bin │ │ ├── OpenFortranParser-0.8.4-3.jar │ │ ├── OpenFortranParserXML-0.4.1.jar │ │ ├── antlr-3.3-complete.jar │ │ └── commons-cli-1.4.jar │ │ ├── f2grfn.py │ │ ├── format.py │ │ ├── genCode.py │ │ ├── genModFileLog.py │ │ ├── genPGM.py │ │ ├── get_comments.py │ │ ├── loop_handle.py │ │ ├── math_ext.py │ │ ├── measure-coverage.py │ │ ├── mod_index_generator.py │ │ ├── preprocessor.py │ │ ├── pyTranslate.py │ │ ├── rectify.py │ │ ├── runner.py │ │ ├── static_save.py │ │ ├── strings.py │ │ ├── syntax.py │ │ ├── translate.py │ │ └── types_ext.py └── utils │ ├── __init__.py │ ├── fp.py │ ├── indra.py │ ├── misc.py │ ├── shell.py │ └── web.py ├── docker-compose.yml ├── docs ├── .buildinfo ├── .gitignore ├── .nojekyll ├── CAG.png ├── CHANGELOG_grfn_spec.md ├── CONTRIBUTING.md ├── GrFN_API.rst ├── Makefile ├── README.md ├── _static │ ├── css │ │ └── custom.css │ └── swagger-ui │ │ ├── swagger-ui-bundle.js │ │ ├── swagger-ui-standalone-preset.js │ │ ├── swagger-ui.css │ │ └── swagger-ui.js ├── conf.py ├── config.rst ├── dbn_construction_from_cag.pdf ├── delphi.rst ├── delphi_database.md ├── delphi_logo.png ├── grfn_index.md ├── grfn_link_hypothesis.txt ├── grfn_openapi.rst ├── grfn_openapi.yaml ├── grfn_spec.rst ├── index.rst ├── installation.md ├── jupyter_tools.rst ├── make.bat ├── make_figures.py ├── make_for2py_figures.py ├── model.rst ├── modules.rst ├── program_analysis │ ├── PA-architecture-toDBNonly.graffle │ ├── PA-architecture-toDBNonly.png │ ├── PA-architecture.graffle │ ├── PA-architecture.pdf │ ├── PA-architecture.png │ └── crop_yield-example-DBN.pdf ├── relativistic_energy_grfn.png ├── sphinxjsondomain.py ├── stochastic_lds.png ├── swagger-yaml-to-html.py └── usage.md ├── external ├── README ├── dbg.h ├── tinycolormap.hpp └── tqdm.hpp ├── lib ├── AnalysisGraph.hpp ├── BaseStatus.cpp ├── BaseStatus.hpp ├── CSVWriter.hpp ├── Config.cpp ├── Config.hpp ├── DatabaseHelper.cpp ├── DatabaseHelper.hpp ├── DelphiPython.cpp ├── DiGraph.hpp ├── Edge.hpp ├── ExperimentStatus.cpp ├── ExperimentStatus.hpp ├── Indicator.cpp ├── Indicator.hpp ├── KDE.cpp ├── KDE.hpp ├── Logger.cpp ├── Logger.hpp ├── ModelStatus.cpp ├── ModelStatus.hpp ├── Node.cpp ├── Node.hpp ├── PybindTester.hpp ├── Random_Variables.cpp ├── Random_Variables.hpp ├── Timer.hpp ├── TrainingStopper.cpp ├── TrainingStopper.hpp ├── Tran_Mat_Cell.cpp ├── Tran_Mat_Cell.hpp ├── causemos_integration.cpp ├── constructors.cpp ├── data.cpp ├── data.hpp ├── database.cpp ├── definitions.h ├── exceptions.hpp ├── format_output.cpp ├── fourier.cpp ├── graph_building.cpp ├── graph_modification.cpp ├── graph_utils.cpp ├── graphviz.cpp ├── graphviz_interface.cpp ├── graphviz_interface.hpp ├── head_nodes.cpp ├── indicator_manipulation.cpp ├── parameter_initialization.cpp ├── prediction.cpp ├── printing.cpp ├── profiler.cpp ├── rng.cpp ├── rng.hpp ├── sampling.cpp ├── sandbox.cpp ├── subgraphs.cpp ├── synthetic_data.cpp ├── to_json.cpp ├── train_model.cpp ├── utils.cpp └── utils.hpp ├── notebooks ├── 12-Month Evaluation.ipynb ├── 2021_june_embed │ └── 2021_june_embed.ipynb ├── Delphi-Demo-Notebook.ipynb ├── README.md ├── backcasting_demo_notebook.ipynb ├── backcasting_test_notebook.ipynb ├── custom.css ├── demo.tpl ├── images │ └── delphi_model.png ├── scripts │ ├── clean_and_commit │ ├── clear_outputs │ └── export_to_html └── synthetic_data_experiment.ipynb ├── scripts ├── ECD_comparison.py ├── Makefile ├── README.md ├── SIR_demo │ ├── DiscreteSEIRD.jl │ ├── DiscreteSEIRD.py │ ├── DiscreteSIR-noarrays.f │ ├── DiscreteSIR-simple.f │ ├── DiscreteSIR.f │ ├── DiscreteSIR.jl │ ├── DiscreteSIR.py │ ├── PYTHON-RANDOM_SEQ │ └── demo_generate_grfn.py ├── assemble_timer_output.py ├── benchmarking.py ├── create_delphi_db.py ├── data_processing │ ├── IMF.py │ ├── IOM-DTM1.py │ ├── WFP.py │ ├── WHO-csv.py │ ├── WHO-excel.py │ ├── WHO-excel1.py │ ├── World-Bank.py │ ├── acled-Ethiopia.py │ ├── acled-South-Sudan-Ethiopia.py │ ├── acled-South-Sudan.py │ ├── combine_data.py │ ├── process_CauseMos_statements.py │ ├── process_FAO_data.py │ ├── process_FEWSNET_data.py │ ├── process_UNHCR_asylum_seeker_data.py │ ├── process_WDI_data.py │ ├── process_climis_unicef_ieconomics_data.py │ ├── process_dssat_data.py │ ├── process_dssat_data_oct2019_eval.py │ ├── process_migration_data_initial.py │ └── process_migration_data_secondary.py ├── debugger.py ├── evaluations │ ├── create_CAG_with_indicators.py │ ├── create_all_sts.py │ ├── create_cag_from_causemos_output.py │ ├── create_inference_plots.py │ ├── create_parameterized_CAG.py │ ├── create_pruned_corpus.py │ ├── create_quantified_CAG.py │ ├── create_reference_CAG.py │ ├── create_scenario_centered_CAG.py │ ├── export_to_sri_and_cra.py │ ├── insert_model_into_db.py │ └── oct_2019_eval.py ├── export_entity_groundings.py ├── f2grfn_standalone.py ├── grfn_links_to_csv.py ├── hackathon │ ├── create_CAG_with_indicators.py │ ├── create_all_sts.py │ ├── create_cag_from_causemos_output.py │ ├── create_evaluable_CAG.py │ ├── create_inference_plots.py │ ├── create_parameterized_CAG.py │ ├── create_pruned_corpus.py │ ├── create_quantified_CAG.py │ ├── create_reference_CAG.py │ ├── create_scenario_centered_CAG.py │ ├── evaluate_CAG.py │ ├── export_to_sri_and_cra.py │ └── insert_model_into_db.py ├── install_boost_from_source.sh ├── install_cmake_from_source ├── install_dependencies.sh ├── install_nlohmann_json_from_source ├── install_pybind11_from_source ├── install_range-v3_from_source ├── measuring-coverage.py ├── modeling_efforts.py ├── period_missing_datapoint_interpolation.py ├── program_analysis │ ├── call_graph.py │ ├── code_diff.py │ ├── dependency_viewer.py │ ├── massage-fortran.py │ └── sensitivity.py ├── rain_analysis.py ├── rainfall_period_analysis.py ├── report │ ├── apnotes.cls │ ├── figs.tex │ └── report.tex ├── rest_api_test_scripts │ ├── test_createICM.sh │ └── test_experiment.sh ├── s3_access.py ├── seasonal_fourier.py ├── snap_diff.py ├── take_model_snapshot.py ├── timing_analysis.py ├── timing_analysis_3D.py └── update_delphi_db.sh ├── setup.py └── tests ├── aske ├── test_GrFN.py ├── test_program_analysis.py ├── test_sensitivity.py ├── test_visualization.py └── test_webapp.py ├── cpptests.cpp ├── data ├── GrFN │ ├── PETASCE_simple.json │ ├── PETASCE_simple_lambdas.py │ ├── PETASCE_simple_torch.json │ ├── PETASCE_simple_torch_lambdas.py │ ├── PETPT_lambdas.py │ ├── PETPT_torch_lambdas.py │ ├── crop_yield.json │ ├── crop_yield_lambdas.py │ ├── petpt_cag_edges.txt │ └── petpt_grfn_edges.txt ├── PETASCE_simple.for ├── causemos_cag.json ├── delphi │ ├── causemos_create-model.json │ ├── causemos_create-model_nodata.json │ ├── causemos_experiemnts_goalopt.json │ ├── causemos_experiments_projection_input.json │ ├── create_model_ideal.json │ ├── create_model_ideal_1.json │ ├── create_model_ideal_10.json │ ├── create_model_ideal_2.json │ ├── create_model_ideal_3.json │ ├── create_model_input_1.json │ ├── create_model_input_2.json │ ├── create_model_input_2_no_data.json │ ├── create_model_input_2_partial_data.json │ ├── create_model_input_new.json │ ├── create_model_rain--temperature--yield.json │ ├── create_model_rain--temperature.json │ ├── create_model_rain--temperature_fourier_test.json │ ├── create_model_test.json │ ├── experiment_food_security_month.json │ ├── experiment_nino34_month.json │ ├── experiment_nino34_year.json │ ├── experiment_predator_month.json │ ├── experiment_predator_year.json │ ├── experiment_sea_level_month.json │ ├── experiment_sea_level_month_inter.json │ ├── experiment_sea_level_year.json │ ├── experiments_fourier_test.json │ ├── experiments_projection_ideal.json │ ├── experiments_projection_ideal_2.json │ ├── experiments_projection_ideal_3.json │ ├── experiments_projection_input_1.json │ ├── experiments_projection_input_2.json │ ├── experiments_projection_test.json │ ├── experiments_rain--temperature--yield.json │ ├── model_food_security_12_nodes_month.json │ ├── model_nino34_2_nodes_month.json │ ├── model_nino34_2_nodes_year.json │ ├── model_predator_2_nodes_month.json │ ├── model_predator_2_nodes_year.json │ ├── model_sea_level_3_nodes_month.json │ └── model_sea_level_3_nodes_year.json ├── delphi_create_model_payload.json ├── indra_statements_format.json ├── program_analysis │ ├── .gitignore │ ├── DSSAT │ │ ├── CSM │ │ │ ├── ASMDM.for │ │ │ ├── AUTHAR.for │ │ │ ├── AUTPLT.for │ │ │ ├── Aloha_GROSUB.for │ │ │ ├── Aloha_NFACTO.for │ │ │ ├── Aloha_NUPTAK.for │ │ │ ├── Aloha_OPGROW.f90 │ │ │ ├── Aloha_OPHARV.for │ │ │ ├── Aloha_PHENOL.for │ │ │ ├── Aloha_PINE.for │ │ │ ├── Aloha_ROOTGR.for │ │ │ ├── Aloha_mod.f90 │ │ │ ├── BS_CERES.for │ │ │ ├── BS_GROSUB.for │ │ │ ├── BS_NFACTO.for │ │ │ ├── BS_NUPTAK.for │ │ │ ├── BS_OPGROW.for │ │ │ ├── BS_OPHARV.for │ │ │ ├── BS_OPNIT.for │ │ │ ├── BS_PHENOL.for │ │ │ ├── BS_ROOTS.for │ │ │ ├── CANOPY.for │ │ │ ├── CENTURY.for │ │ │ ├── CE_RATIO_C.for │ │ │ ├── CHEMICAL.for │ │ │ ├── CO2VAL.for │ │ │ ├── COMGEN.blk │ │ │ ├── COMIBS.blk │ │ │ ├── COMSOI.blk │ │ │ ├── COMSWI.blk │ │ │ ├── CROPGRO.for │ │ │ ├── CSCAS.for │ │ │ ├── CSCAS_Interface.for │ │ │ ├── CSCER.for │ │ │ ├── CSCERES_Interface.for │ │ │ ├── CSCRP.for │ │ │ ├── CSCRP_Interface.for │ │ │ ├── CSDISEASE.for │ │ │ ├── CSM.for │ │ │ ├── CSMVersion.for │ │ │ ├── CSP_CANOPY.for │ │ │ ├── CSP_CASUPRO.for │ │ │ ├── CSP_GROW_CANE.for │ │ │ ├── CSP_HRes.for │ │ │ ├── CSP_INCOMP.for │ │ │ ├── CSP_INCOMP_OUT.for │ │ │ ├── CSP_INPHENOL.for │ │ │ ├── CSP_IPPHENOL.for │ │ │ ├── CSP_IPPLNT.for │ │ │ ├── CSP_NUPTAK.for │ │ │ ├── CSP_OPGROW.for │ │ │ ├── CSP_OPHARV.for │ │ │ ├── CSP_PHENOL.for │ │ │ ├── CSP_PHOTO.for │ │ │ ├── CSP_RESPIR.for │ │ │ ├── CSP_ROOTS.for │ │ │ ├── CSP_SENES.for │ │ │ ├── CSREADS.for │ │ │ ├── CSUTS.for │ │ │ ├── CSYCA.f90 │ │ │ ├── CSYCA_Interface.for │ │ │ ├── DATES.for │ │ │ ├── DECRAT_C.for │ │ │ ├── DEMAND.for │ │ │ ├── DS1900.f90 │ │ │ ├── DSSATPRO.L47 │ │ │ ├── Denit_Ceres.for │ │ │ ├── Denit_DayCent.for │ │ │ ├── EFLOW_C.for │ │ │ ├── EQUIL2.for │ │ │ ├── ERROR.OUT │ │ │ ├── ERROR.for │ │ │ ├── ESR_SoilEvap.for │ │ │ ├── ETPHOT.for │ │ │ ├── ETPHR.for │ │ │ ├── FCHEM.for │ │ │ ├── FLOODI.for │ │ │ ├── FREEZE.for │ │ │ ├── Fert_Place.for │ │ │ ├── Flood_Chem.for │ │ │ ├── Flood_Irrig.for │ │ │ ├── FreshWt.for │ │ │ ├── GETOBS.f90 │ │ │ ├── GPPARGET.f90 │ │ │ ├── GPPARSET.f90 │ │ │ ├── GROW.for │ │ │ ├── G_Exper.f90 │ │ │ ├── G_Soil.f90 │ │ │ ├── HMET.for │ │ │ ├── HResCeres.for │ │ │ ├── HRes_CGRO.for │ │ │ ├── IMMOBLIMIT_C.for │ │ │ ├── INCOMP.for │ │ │ ├── INCORPOR_C.for │ │ │ ├── INFIL.for │ │ │ ├── INQOBS.f90 │ │ │ ├── INSOIL.for │ │ │ ├── INSTGE.for │ │ │ ├── INSW.for │ │ │ ├── INTGR2.f90 │ │ │ ├── INTGRL.for │ │ │ ├── INTRO.for │ │ │ ├── INVAR.for │ │ │ ├── IPCHEM.for │ │ │ ├── IPECO.for │ │ │ ├── IPENV.for │ │ │ ├── IPHedley_C.for │ │ │ ├── IPHedley_inorg.for │ │ │ ├── IPIBS.for │ │ │ ├── IPMAN.for │ │ │ ├── IPPARM.for │ │ │ ├── IPPEST.for │ │ │ ├── IPPLNT.for │ │ │ ├── IPPROG.for │ │ │ ├── IPSIM.for │ │ │ ├── IPSLIN.for │ │ │ ├── IPSOIL.for │ │ │ ├── IPSOIL_Inp.for │ │ │ ├── IPTILL.for │ │ │ ├── IPVAR.for │ │ │ ├── IPWTH_alt.for │ │ │ ├── IRRIG.for │ │ │ ├── Info.for │ │ │ ├── Ipphenol.for │ │ │ ├── LAND.for │ │ │ ├── LIMIT.for │ │ │ ├── LINDM.for │ │ │ ├── LINT2.for │ │ │ ├── LITDEC_C.for │ │ │ ├── LMATCH.for │ │ │ ├── LUN.LST │ │ │ ├── ML_CERES.for │ │ │ ├── ML_GROSUB.for │ │ │ ├── ML_NFACT.for │ │ │ ├── ML_NUPTAK.for │ │ │ ├── ML_OPGROW.for │ │ │ ├── ML_PHASEI.for │ │ │ ├── ML_PHENOL.for │ │ │ ├── ML_TILLSUB.for │ │ │ ├── ML_opharv.for │ │ │ ├── ML_rootgr.for │ │ │ ├── MOBIL.for │ │ │ ├── MODEL.ERR │ │ │ ├── MULCHEVAP.for │ │ │ ├── MULCHLAYER.for │ │ │ ├── MULCHWAT.for │ │ │ ├── MZ_CERES.for │ │ │ ├── MZ_GROSUB.for │ │ │ ├── MZ_IX_GROSUB.for │ │ │ ├── MZ_IX_KNUMBER.for │ │ │ ├── MZ_IX_LEAFAREA.for │ │ │ ├── MZ_IX_NUPTAK.for │ │ │ ├── MZ_IX_PHENOL.for │ │ │ ├── MZ_IX_PHOTSYNT.for │ │ │ ├── MZ_IX_PLANTG.for │ │ │ ├── MZ_IX_RADABS.for │ │ │ ├── MZ_IX_RESPIR.for │ │ │ ├── MZ_KUPTAK.for │ │ │ ├── MZ_NFACTO.for │ │ │ ├── MZ_NUPTAK.for │ │ │ ├── MZ_OPGROW.for │ │ │ ├── MZ_OPHARV.for │ │ │ ├── MZ_OPNIT.for │ │ │ ├── MZ_PHENOL.for │ │ │ ├── MZ_ROOTS.for │ │ │ ├── Makefile │ │ │ ├── MgmtOps.for │ │ │ ├── ModuleDefs.for │ │ │ ├── N2O_mod.for │ │ │ ├── NCHECK_C.for │ │ │ ├── NCHECK_inorg.for │ │ │ ├── NCHECK_organic.for │ │ │ ├── NFIX.for │ │ │ ├── NFLUX.for │ │ │ ├── NUPTAK.for │ │ │ ├── Ncrop3.f90 │ │ │ ├── NightT.f90 │ │ │ ├── Nnostress2.f90 │ │ │ ├── OBSINI.f90 │ │ │ ├── OBSSYS.f90 │ │ │ ├── OM_Place.for │ │ │ ├── OPETPHOT.for │ │ │ ├── OPFLOODN.for │ │ │ ├── OPGEN.for │ │ │ ├── OPHARV.for │ │ │ ├── OPHEAD.for │ │ │ ├── OPMULCH.for │ │ │ ├── OPPEST.for │ │ │ ├── OPSOILNI.for │ │ │ ├── OPSOMLIT_C.for │ │ │ ├── OPSTOR.f90 │ │ │ ├── OPSTRESS.for │ │ │ ├── OPSUM.for │ │ │ ├── OPSYS.f90 │ │ │ ├── OPTEMPXY2K.for │ │ │ ├── OPVIEW.for │ │ │ ├── OPWBAL.for │ │ │ ├── OPWEATH.for │ │ │ ├── ORYZA1.f90 │ │ │ ├── ORYZA_Interface.f90 │ │ │ ├── OR_Opgrow.f90 │ │ │ ├── OR_Opharv.for │ │ │ ├── OR_PHENOL.f90 │ │ │ ├── OR_ROOTG.f90 │ │ │ ├── OSDefinitions.for │ │ │ ├── OXLAYER.for │ │ │ ├── OpFlood.for │ │ │ ├── OpPlantP.for │ │ │ ├── OpSoilKi.for │ │ │ ├── OpSoilOrg.for │ │ │ ├── OpSoilPi.for │ │ │ ├── OpStemp.for │ │ │ ├── Opgrow.for │ │ │ ├── PARTITION.f90 │ │ │ ├── PARTIT_C.for │ │ │ ├── PATH.for │ │ │ ├── PEST.for │ │ │ ├── PESTCP.for │ │ │ ├── PET.for │ │ │ ├── PHENOL.for │ │ │ ├── PHOTO.for │ │ │ ├── PODDET.for │ │ │ ├── PODS.for │ │ │ ├── PPlantSubs.for │ │ │ ├── PT_GROSUB.for │ │ │ ├── PT_NFACTO.for │ │ │ ├── PT_NUPTAK.for │ │ │ ├── PT_OPGROW.for │ │ │ ├── PT_OPHARV.for │ │ │ ├── PT_PHASEI.for │ │ │ ├── PT_PHENOL.for │ │ │ ├── PT_ROOTGR.for │ │ │ ├── PT_SUBSTOR.for │ │ │ ├── PT_THTIME.for │ │ │ ├── P_CASUPRO.for │ │ │ ├── P_CERES.for │ │ │ ├── P_CGRO.for │ │ │ ├── P_IPPLNT.for │ │ │ ├── P_Plant.for │ │ │ ├── P_Uptake.for │ │ │ ├── Paddy_Mgmt.for │ │ │ ├── PlantNBal.for │ │ │ ├── README.md │ │ │ ├── READS.for │ │ │ ├── RESPIR.for │ │ │ ├── RETC_VG.for │ │ │ ├── RICE.for │ │ │ ├── RI_Calcshk.for │ │ │ ├── RI_GNURSE.for │ │ │ ├── RI_Grosub.for │ │ │ ├── RI_Ipcrop.for │ │ │ ├── RI_KUPTAK.for │ │ │ ├── RI_Nfacto.for │ │ │ ├── RI_Nuptak.for │ │ │ ├── RI_Opgrow.for │ │ │ ├── RI_Opharv.for │ │ │ ├── RI_Phenol.for │ │ │ ├── RI_Rootgr.for │ │ │ ├── RI_Tillsub.for │ │ │ ├── RI_Transpl_g.for │ │ │ ├── RI_Transpl_p.for │ │ │ ├── RNOFF.for │ │ │ ├── ROOTDM.for │ │ │ ├── ROOTS.for │ │ │ ├── ROOTWU.for │ │ │ ├── RPLACE_C.for │ │ │ ├── RStages.for │ │ │ ├── RootSoilVol.for │ │ │ ├── RunList.for │ │ │ ├── SASTRO.f90 │ │ │ ├── SATFLO.for │ │ │ ├── SC_CCOUT.for │ │ │ ├── SC_CNGRO.for │ │ │ ├── SC_CNG_mods.for │ │ │ ├── SC_COEFFS.for │ │ │ ├── SC_Canop3.for │ │ │ ├── SC_ETOUT.for │ │ │ ├── SC_GTP_SHOOTS.for │ │ │ ├── SC_OPHARV.for │ │ │ ├── SC_OUTPUT.for │ │ │ ├── SC_PARTIT.for │ │ │ ├── SC_PHENOL.for │ │ │ ├── SC_PHOTOS.for │ │ │ ├── SC_Poplt3.for │ │ │ ├── SC_ROOTG.for │ │ │ ├── SDCOMP.for │ │ │ ├── SECLI.for │ │ │ ├── SECROP.for │ │ │ ├── SEEDDM.for │ │ │ ├── SEFERT.for │ │ │ ├── SEFLD.for │ │ │ ├── SEFREQ.for │ │ │ ├── SEHARV.for │ │ │ ├── SEINIT.for │ │ │ ├── SEIRR.for │ │ │ ├── SENES.for │ │ │ ├── SENESADD_C.for │ │ │ ├── SENS.for │ │ │ ├── SEPEST.for │ │ │ ├── SEPLT.for │ │ │ ├── SERES.for │ │ │ ├── SESIM.for │ │ │ ├── SESOIL.for │ │ │ ├── SETIME.for │ │ │ ├── SEVAR.for │ │ │ ├── SEWTH.for │ │ │ ├── SGPC1.f90 │ │ │ ├── SGPC2.f90 │ │ │ ├── SGPCDT.f90 │ │ │ ├── SGPL.f90 │ │ │ ├── SG_CERES.for │ │ │ ├── SG_GROSUB.for │ │ │ ├── SG_NFACT.for │ │ │ ├── SG_NUPTAK.for │ │ │ ├── SG_OPHARV.for │ │ │ ├── SG_PHASEI.for │ │ │ ├── SG_PHENOL.for │ │ │ ├── SG_ROOTGR.for │ │ │ ├── SLigCeres.for │ │ │ ├── SOIL.for │ │ │ ├── SOILDYN.for │ │ │ ├── SOILEV.for │ │ │ ├── SOILNI.for │ │ │ ├── SOLAR.for │ │ │ ├── SOMDEC_C.for │ │ │ ├── SOMFIX_C.for │ │ │ ├── SOMINIT_c.for │ │ │ ├── SOMLITPRINT_C.for │ │ │ ├── SPAM.for │ │ │ ├── SPSUBS.for │ │ │ ├── SRDPRF.f90 │ │ │ ├── SSKYC.f90 │ │ │ ├── STEMP.for │ │ │ ├── STEMP_EPIC.for │ │ │ ├── SUBCBC.f90 │ │ │ ├── SUBCD2.f90 │ │ │ ├── SUBDD.f90 │ │ │ ├── SUBGRN.f90 │ │ │ ├── SUBLAI3.f90 │ │ │ ├── SVPS1.f90 │ │ │ ├── SW_FreshWt.for │ │ │ ├── SW_GROSUB.for │ │ │ ├── SoilCBal_C.for │ │ │ ├── SoilCNPinit_C.for │ │ │ ├── SoilK_init.for │ │ │ ├── SoilKi.for │ │ │ ├── SoilMixing.for │ │ │ ├── SoilNBalSum.for │ │ │ ├── SoilNiBal.for │ │ │ ├── SoilNi_init.for │ │ │ ├── SoilNoBal.for │ │ │ ├── SoilNoBal_C.for │ │ │ ├── SoilNoPoBal.for │ │ │ ├── SoilOrg.for │ │ │ ├── SoilOrg_init.for │ │ │ ├── SoilPBalSum.for │ │ │ ├── SoilPi.for │ │ │ ├── SoilPiBal.for │ │ │ ├── SoilPi_init.for │ │ │ ├── SoilPoBal.for │ │ │ ├── SoilPoBal_C.for │ │ │ ├── TILEDRAIN.for │ │ │ ├── TRANS.for │ │ │ ├── TR_Calcshk.for │ │ │ ├── TR_Grosub.for │ │ │ ├── TR_Ipcrop.for │ │ │ ├── TR_Nfacto.for │ │ │ ├── TR_Nuptak.for │ │ │ ├── TR_OPGROW.for │ │ │ ├── TR_Opharv.for │ │ │ ├── TR_Phenol.for │ │ │ ├── TR_Rootgr.for │ │ │ ├── TR_SUBSTOR.for │ │ │ ├── TR_Tillsub.for │ │ │ ├── TR_Transpl_g.for │ │ │ ├── TR_Transpl_p.for │ │ │ ├── TSOMLIT_C.for │ │ │ ├── TTHEAD.f90 │ │ │ ├── TextureClass.for │ │ │ ├── TillEvent.for │ │ │ ├── Tillage.for │ │ │ ├── UTILS.for │ │ │ ├── VARIABLE.f90 │ │ │ ├── VEGDM.for │ │ │ ├── VEGGR.for │ │ │ ├── WARNING.OUT │ │ │ ├── WATBAL.for │ │ │ ├── WBAL.for │ │ │ ├── WBSUBS.for │ │ │ ├── WEATHR_Inp.for │ │ │ ├── WGEN.for │ │ │ ├── WH_APSIM.for │ │ │ ├── WH_COLD.for │ │ │ ├── WH_GROSUB.for │ │ │ ├── WH_NFACTO.for │ │ │ ├── WH_NUPTAK.for │ │ │ ├── WH_OPGROW.for │ │ │ ├── WH_OPHARV.for │ │ │ ├── WH_OPNIT.for │ │ │ ├── WH_PHENOL.for │ │ │ ├── WH_ROOTS.for │ │ │ ├── WH_SW_SUBS.for │ │ │ ├── WH_module.f90 │ │ │ ├── WH_temp.for │ │ │ ├── WStress2.f90 │ │ │ ├── WTHMOD.for │ │ │ ├── WTHSET.for │ │ │ ├── Warning.for │ │ │ ├── YCA_Albedo_Check_m.f90 │ │ │ ├── YCA_Control_Environment.f90 │ │ │ ├── YCA_Control_Leaf.f90 │ │ │ ├── YCA_Control_Photosynthesis.f90 │ │ │ ├── YCA_Control_Plant.f90 │ │ │ ├── YCA_Control_VPDEffect.f90 │ │ │ ├── YCA_First_Trans_m.f90 │ │ │ ├── YCA_Formats_m.f90 │ │ │ ├── YCA_Growth.f90 │ │ │ ├── YCA_Growth_Distribute.f90 │ │ │ ├── YCA_Growth_Evapo.f90 │ │ │ ├── YCA_Growth_Init.f90 │ │ │ ├── YCA_Growth_NUptake.f90 │ │ │ ├── YCA_Growth_Part.f90 │ │ │ ├── YCA_Growth_Photo.f90 │ │ │ ├── YCA_Growth_Rates.f90 │ │ │ ├── YCA_Growth_Senesce.f90 │ │ │ ├── YCA_Integ_AgesWts.f90 │ │ │ ├── YCA_Integ_EndCrop.f90 │ │ │ ├── YCA_Integ_HstFail.f90 │ │ │ ├── YCA_Integ_LA.f90 │ │ │ ├── YCA_Integ_N.f90 │ │ │ ├── YCA_Integ_Nconc.f90 │ │ │ ├── YCA_Integ_SeasEnd.f90 │ │ │ ├── YCA_Integ_Stages.f90 │ │ │ ├── YCA_Integ_WthrSum.f90 │ │ │ ├── YCA_Integrate.f90 │ │ │ ├── YCA_Node.f90 │ │ │ ├── YCA_Out_CrpSim.f90 │ │ │ ├── YCA_Out_Error.f90 │ │ │ ├── YCA_Out_Eval.f90 │ │ │ ├── YCA_Out_LfTier.f90 │ │ │ ├── YCA_Out_ModFail.f90 │ │ │ ├── YCA_Out_PlGrow.f90 │ │ │ ├── YCA_Out_PlantSum.f90 │ │ │ ├── YCA_Out_ReInit.f90 │ │ │ ├── YCA_Out_Sens.f90 │ │ │ ├── YCA_Out_StoreVars.f90 │ │ │ ├── YCA_Out_Work.f90 │ │ │ ├── YCA_Out_WrkPhenRes.f90 │ │ │ ├── YCA_Output.f90 │ │ │ ├── YCA_PrePlant.f90 │ │ │ ├── YCA_RunInit.f90 │ │ │ ├── YCA_SeasInit.f90 │ │ │ ├── YCA_SeasInit_Final.f90 │ │ │ ├── YCA_SeasInit_PlHarvDat.f90 │ │ │ ├── YCA_SeasInit_ReadGeno.f90 │ │ │ ├── YCA_SeasInit_ReadXfile.f90 │ │ │ ├── YCA_SeasInit_SetStage.f90 │ │ │ ├── YCA_SeasInit_VarInit.f90 │ │ │ ├── addinf.for │ │ │ ├── addint.for │ │ │ ├── addrea.for │ │ │ ├── addref.for │ │ │ ├── addstf.for │ │ │ ├── addstr.for │ │ │ ├── ambusy.for │ │ │ ├── csvlinklist.f90 │ │ │ ├── csvoutput.f90 │ │ │ ├── decrea.for │ │ │ ├── decrec.for │ │ │ ├── diffusiv.for │ │ │ ├── dtleap.for │ │ │ ├── dtsys.for │ │ │ ├── entcha.for │ │ │ ├── entdch.for │ │ │ ├── enthlp.for │ │ │ ├── extens.for │ │ │ ├── fatalerr.f90 │ │ │ ├── flexist.for │ │ │ ├── flname.for │ │ │ ├── fopengstandard.f90 │ │ │ ├── fopens.for │ │ │ ├── for_asmdm.for │ │ │ ├── for_canopy.for │ │ │ ├── for_ch2oref.for │ │ │ ├── for_demand.for │ │ │ ├── for_dormancy.for │ │ │ ├── for_freeze.for │ │ │ ├── for_grow.for │ │ │ ├── for_harv.for │ │ │ ├── for_hres_cgro.for │ │ │ ├── for_incomp.for │ │ │ ├── for_ipparm.for │ │ │ ├── for_ippest.for │ │ │ ├── for_ipphenol.for │ │ │ ├── for_ipplnt.for │ │ │ ├── for_ipprog.for │ │ │ ├── for_lindm.for │ │ │ ├── for_mobil.for │ │ │ ├── for_nfix.for │ │ │ ├── for_nuptak.for │ │ │ ├── for_opgrow.for │ │ │ ├── for_opmob.for │ │ │ ├── for_oppest.for │ │ │ ├── for_pest.for │ │ │ ├── for_pestcp.for │ │ │ ├── for_phenol.for │ │ │ ├── for_photo.for │ │ │ ├── for_plantnbal.for │ │ │ ├── for_poddet.for │ │ │ ├── for_pods.for │ │ │ ├── for_respir.for │ │ │ ├── for_rootdm.for │ │ │ ├── for_roots.for │ │ │ ├── for_rstages.for │ │ │ ├── for_sdcomp.for │ │ │ ├── for_seeddm.for │ │ │ ├── for_senmob.for │ │ │ ├── for_vegdm.for │ │ │ ├── for_veggr.for │ │ │ ├── forage.for │ │ │ ├── fort.503 │ │ │ ├── getrec.for │ │ │ ├── getun.for │ │ │ ├── ifindc.f90 │ │ │ ├── input_sub.for │ │ │ ├── ipexp.for │ │ │ ├── istart.for │ │ │ ├── lextokin.inc │ │ │ ├── lowerc.for │ │ │ ├── messinq.f90 │ │ │ ├── messwrt.for │ │ │ ├── notnul.for │ │ │ ├── nox_pulse.f90 │ │ │ ├── optempy2k.for │ │ │ ├── outcom.for │ │ │ ├── outdat.f90 │ │ │ ├── parsword.for │ │ │ ├── plant.for │ │ │ ├── quadpack.f90 │ │ │ ├── rdarea.for │ │ │ ├── rddata.for │ │ │ ├── rddata.inc │ │ │ ├── rddecinf.inc │ │ │ ├── rddtmp.for │ │ │ ├── rderr.for │ │ │ ├── rderri.for │ │ │ ├── rderrinf.inc │ │ │ ├── rdfilinf.inc │ │ │ ├── rdindx.for │ │ │ ├── rdinit.for │ │ │ ├── rdinlv.for │ │ │ ├── rdinqr.for │ │ │ ├── rdjdat.gin │ │ │ ├── rdjdec.gin │ │ │ ├── rdlex.for │ │ │ ├── rdmachin.inc │ │ │ ├── rdndat.gin │ │ │ ├── rdndec.gin │ │ │ ├── rdrecinf.inc │ │ │ ├── rdscha.for │ │ │ ├── rdsctb.for │ │ │ ├── rdsint.for │ │ │ ├── rdsrea.for │ │ │ ├── rdstainf.inc │ │ │ ├── rdtblinf.inc │ │ │ ├── rdtmp1.for │ │ │ ├── rdtmp2.for │ │ │ ├── recread.f90 │ │ │ ├── recread.inc │ │ │ ├── recreadi.f90 │ │ │ ├── recreadt.f90 │ │ │ ├── str_copy.for │ │ │ ├── swpi4.for │ │ │ ├── ttutilprefs.f90 │ │ │ ├── upperc.f90 │ │ │ ├── warning_OR.for │ │ │ ├── weathr.for │ │ │ ├── wnostress.f90 │ │ │ └── words.for │ │ └── README.md │ ├── ORIG-PETASCE.for │ ├── PETASCE_markedup.for │ ├── PETASCE_markedup.py │ ├── PETASCE_simple.for │ ├── PETASCE_single.for │ ├── PETASCE_single.py │ ├── PETDYN.for │ ├── PETPEN.for │ ├── PETPNO.for │ ├── PETPT.for │ ├── PETPT.py │ ├── SIR-Gillespie-MS.f │ ├── SIR-Gillespie-SD.f │ ├── SIR-Gillespie-SD_GrFN_with_groundings.json │ ├── SIR-Gillespie-SD_inline.f │ ├── SIR-Gillespie-SD_inline.py │ ├── SIR-Gillespie-SD_module.f │ ├── SIR-Gillespie-SD_multi_module.f │ ├── SIR-Gillespie-SD_multi_module_GrFN.json │ ├── SIR-Gillespie-SD_multi_module_lambdas.py │ ├── SIR-simple.f │ ├── SIR-simple_with_groundings.json │ ├── SimpleModular │ │ ├── IRRIG.INP │ │ ├── PLANT.INP │ │ ├── SIMCTRL.INP │ │ ├── SOIL.INP │ │ ├── SimpleModular-1file.for │ │ └── WEATHER.INP │ ├── array_func_loop │ │ ├── SIR-Gillespie-SD.f │ │ ├── array-loop_01.f │ │ ├── array-to-func_01.f │ │ ├── array-to-func_01a.f │ │ ├── array-to-func_02.f │ │ ├── array-to-func_03.f │ │ ├── array-to-func_04.f │ │ ├── array-to-func_05.f │ │ ├── array-to-func_06.f │ │ └── array-to-func_06.py │ ├── arrays-basic-06.py │ ├── arrays │ │ ├── INFILE-GAUSSIAN │ │ ├── Makefile │ │ ├── Translation │ │ │ ├── .#foo.py │ │ │ ├── arrays-basic-01.py │ │ │ ├── arrays-basic-02.py │ │ │ ├── arrays-basic-03.py │ │ │ ├── arrays-basic-04.py │ │ │ ├── arrays-basic-05.py │ │ │ ├── arrays-basic-06.py │ │ │ ├── arrays-constr-01.py │ │ │ ├── arrays-constr-02.py │ │ │ ├── arrays-constr-03.py │ │ │ ├── arrays-constr-04.py │ │ │ ├── arrays-constr-05.py │ │ │ ├── arrays-constr-06.py │ │ │ ├── arrays-constr-07.py │ │ │ ├── arrays-sect-01.py │ │ │ ├── arrays-sect-02.py │ │ │ ├── arrays-sect-03.py │ │ │ ├── arrays-sect-04.py │ │ │ ├── arrays-sect-05.py │ │ │ ├── arrays-sect-06.py │ │ │ ├── arrays-sect-07.py │ │ │ ├── arrays-sect-08.py │ │ │ ├── arrays-sect-09.py │ │ │ ├── arrays-sect-10.py │ │ │ ├── arrays-sect-11.py │ │ │ ├── arrays-sect-12.py │ │ │ ├── arrays-sect-13.py │ │ │ ├── arrays-sect-14.py │ │ │ ├── arrays-sect-15.py │ │ │ ├── arrays-sect-16.py │ │ │ ├── arrays-sect-17.py │ │ │ ├── arrays-sect-18.py │ │ │ ├── arrays-sect-19.py │ │ │ ├── arrays-sect-20.py │ │ │ ├── arrays-sect-21.py │ │ │ └── arrays-sect-22.py │ │ ├── array2d-slice-01.f │ │ ├── array2d-slice-02.f │ │ ├── array2d-slice-03.f │ │ ├── array2d-slice-04.f │ │ ├── array2d-slice-05.f │ │ ├── array2d-slice-06.f │ │ ├── array2d-slice-07.f │ │ ├── arrays-basic-01.f │ │ ├── arrays-basic-01.json │ │ ├── arrays-basic-02.f │ │ ├── arrays-basic-03.f │ │ ├── arrays-basic-04.f │ │ ├── arrays-basic-05.f │ │ ├── arrays-basic-06.f │ │ ├── arrays-basic-06.py │ │ ├── arrays-basic-06_GrFN.json │ │ ├── arrays-basic-06_lambdas.py │ │ ├── arrays-basic-07.f │ │ ├── arrays-basic-08.f │ │ ├── arrays-constr-01.f │ │ ├── arrays-constr-02.f │ │ ├── arrays-constr-03.f │ │ ├── arrays-constr-04.f │ │ ├── arrays-constr-05.f │ │ ├── arrays-constr-06.f │ │ ├── arrays-constr-07.f │ │ ├── arrays-sect-01.f │ │ ├── arrays-sect-02.f │ │ ├── arrays-sect-03.f │ │ ├── arrays-sect-04.f │ │ ├── arrays-sect-05.f │ │ ├── arrays-sect-06.f │ │ ├── arrays-sect-07.f │ │ ├── arrays-sect-08.f │ │ ├── arrays-sect-09.f │ │ ├── arrays-sect-10.f │ │ ├── arrays-sect-11.f │ │ ├── arrays-sect-12.f │ │ ├── arrays-sect-13.f │ │ ├── arrays-sect-14.f │ │ ├── arrays-sect-15.f │ │ ├── arrays-sect-16.f │ │ ├── arrays-sect-17.f │ │ ├── arrays-sect-18.f │ │ ├── arrays-sect-19.f │ │ ├── arrays-sect-20.f │ │ ├── arrays-sect-21.f │ │ └── arrays-sect-22.f │ ├── continuation_line │ │ ├── continuation-lines-01.for │ │ ├── continuation-lines-01.py │ │ ├── continuation-lines-02.f90 │ │ └── continuation-lines-02.py │ ├── crop_yield.f │ ├── crop_yield.py │ ├── cycle │ │ ├── cycle_01.f │ │ ├── cycle_02.f │ │ ├── cycle_03.f │ │ └── cycle_03.py │ ├── data_statement │ │ ├── data01.f │ │ ├── data02.f │ │ ├── data03.f │ │ ├── data04.f │ │ ├── data05.f │ │ ├── data06.f │ │ ├── data07.f │ │ ├── data_test.f │ │ ├── data_test.py │ │ └── future.f │ ├── derived-types-04.py │ ├── derived-types-04_GrFN.json │ ├── derived-types-04_lambdas.py │ ├── derived-types │ │ ├── Translation │ │ │ ├── M_mymod.py │ │ │ ├── derived-types-01.py │ │ │ ├── derived-types-02.py │ │ │ └── interface-01.py │ │ ├── derived-types-01.f │ │ ├── derived-types-02.f │ │ ├── derived-types-02_GrFN.json │ │ ├── derived-types-02_lambdas.py │ │ ├── derived-types-03.f │ │ ├── derived-types-03.py │ │ ├── derived-types-04.f │ │ ├── derived-types-04_GrFN.json │ │ ├── derived-types-04_lambdas.py │ │ ├── derived-types-07.f │ │ ├── derived-types-07.py │ │ └── interface-01.f │ ├── do-while │ │ ├── do_while_01.f │ │ ├── do_while_02.f │ │ ├── do_while_03.f │ │ ├── do_while_04.f │ │ └── do_while_04.py │ ├── do_while_05.py │ ├── floating_precision │ │ ├── array_basic.f │ │ └── precisionFix.f │ ├── goto │ │ ├── eliminated_gotos │ │ │ ├── goto_01_eliminated.f │ │ │ ├── goto_02_eliminated.f │ │ │ ├── goto_03_eliminated.f │ │ │ ├── goto_04_eliminated.f │ │ │ ├── goto_05_eliminated.f │ │ │ ├── goto_06_eliminated.f │ │ │ ├── goto_07_eliminated.f │ │ │ ├── goto_08_eliminated.f │ │ │ └── goto_09_eliminated.f │ │ ├── goto_01.f │ │ ├── goto_02.f │ │ ├── goto_02.py │ │ ├── goto_03.f │ │ ├── goto_04.f │ │ ├── goto_05.f │ │ ├── goto_06.f │ │ ├── goto_07.f │ │ ├── goto_08.f │ │ ├── goto_08.py │ │ ├── goto_09.f │ │ └── goto_09.py │ ├── initial_values.f │ ├── interface │ │ ├── interface_01.f │ │ ├── interface_02.f │ │ ├── interface_03.f │ │ ├── interface_03.py │ │ ├── m_interface03_mod.py │ │ └── m_mymod.py │ ├── io-tests │ │ ├── infile1 │ │ ├── infile2 │ │ ├── infile3 │ │ ├── iotest_01.for │ │ ├── iotest_02.for │ │ ├── iotest_03.for │ │ ├── iotest_04.for │ │ ├── iotest_05.for │ │ ├── iotest_05.json │ │ ├── iotest_05.py │ │ ├── iotest_05_GrFN.json │ │ ├── iotest_06.for │ │ ├── iotest_06.py │ │ ├── iotest_07.for │ │ ├── iotest_07.py │ │ ├── outfile1 │ │ └── outfile2 │ ├── io-xlat-test01.for │ ├── io-xlat-test02.for │ ├── iotest_05_GrFN.json │ ├── loop_breaks │ │ ├── break_01.f │ │ ├── break_01.py │ │ ├── break_02.py │ │ ├── break_03.py │ │ ├── break_04.py │ │ ├── break_05.py │ │ ├── break_06.py │ │ └── break_07.py │ ├── modules │ │ ├── Makefile │ │ ├── PETASCE_01.for │ │ ├── PETASCE_02.for │ │ ├── m_mymod8.py │ │ ├── nested_module.f │ │ ├── test_module_01-OUT.txt │ │ ├── test_module_01.f │ │ ├── test_module_02-OUT.txt │ │ ├── test_module_02.f │ │ ├── test_module_03-OUT.txt │ │ ├── test_module_03.f │ │ ├── test_module_04-OUT.txt │ │ ├── test_module_04.f │ │ ├── test_module_05-OUT.txt │ │ ├── test_module_05.f │ │ ├── test_module_06-OUT.txt │ │ ├── test_module_06.f │ │ ├── test_module_07-OUT.txt │ │ ├── test_module_07.f │ │ ├── test_module_08-OUT.txt │ │ ├── test_module_08.f │ │ ├── test_module_08.py │ │ ├── test_module_09-OUT.txt │ │ ├── test_module_09.f │ │ ├── test_module_10-OUT.txt │ │ ├── test_module_10.f │ │ ├── test_module_11-OUT.txt │ │ ├── test_module_11.f │ │ └── test_module_12.f │ ├── multifile_multimod │ │ ├── dssat-PET-01 │ │ │ ├── CO2047.WDA │ │ │ ├── COMIBS.blk │ │ │ ├── COMSOI.blk │ │ │ ├── COMSWI.blk │ │ │ ├── CSM.for │ │ │ ├── CSMVersion.for │ │ │ ├── DATA.CDE │ │ │ ├── DATES.for │ │ │ ├── DETAIL.CDE │ │ │ ├── DSSATPRO.L47 │ │ │ ├── DSSBatch.v47 │ │ │ ├── ERROR.for │ │ │ ├── IPIBS.for │ │ │ ├── LAND.for │ │ │ ├── Makefile │ │ │ ├── ModuleDefs.for │ │ │ ├── OSDefinitions.for │ │ │ ├── OUTPUT.CDE │ │ │ ├── PATH.for │ │ │ ├── README.md │ │ │ ├── READS.for │ │ │ ├── RESCH047.SDA │ │ │ ├── RUN-CMD │ │ │ ├── SBGRO047.CUL │ │ │ ├── SBGRO047.ECO │ │ │ ├── SBGRO047.SPE │ │ │ ├── SIMULATION.CDE │ │ │ ├── SOIL.for │ │ │ ├── UFGA7801.SBA │ │ │ ├── UFGA7801.SBT │ │ │ ├── UFGA7801.SBX │ │ │ ├── UFGA7801.WTH │ │ │ ├── UTILS.for │ │ │ └── input_sub.for │ │ ├── dssat-PET-02 │ │ │ ├── CO2047.WDA │ │ │ ├── CO2VAL.for │ │ │ ├── COMGEN.blk │ │ │ ├── COMIBS.blk │ │ │ ├── COMSOI.blk │ │ │ ├── COMSWI.blk │ │ │ ├── CSM.for │ │ │ ├── CSMVersion.for │ │ │ ├── DATA.CDE │ │ │ ├── DATES.for │ │ │ ├── DETAIL.CDE │ │ │ ├── DSSAT47.INP │ │ │ ├── DSSATPRO.L47 │ │ │ ├── DSSBatch.v47 │ │ │ ├── ERROR.for │ │ │ ├── ETPHOT.for │ │ │ ├── ETPHR.for │ │ │ ├── HMET.for │ │ │ ├── IPIBS.for │ │ │ ├── IPWTH_alt.for │ │ │ ├── Info.for │ │ │ ├── LAND.for │ │ │ ├── Makefile │ │ │ ├── ModuleDefs.for │ │ │ ├── OPETPHOT.for │ │ │ ├── OPHEAD.for │ │ │ ├── OPWEATH.for │ │ │ ├── OSDefinitions.for │ │ │ ├── OUTPUT.CDE │ │ │ ├── OpStemp.for │ │ │ ├── PATH.for │ │ │ ├── README.md │ │ │ ├── READS.for │ │ │ ├── RESCH047.SDA │ │ │ ├── RUN-CMD │ │ │ ├── SBGRO047.CUL │ │ │ ├── SBGRO047.ECO │ │ │ ├── SBGRO047.SPE │ │ │ ├── SIMULATION.CDE │ │ │ ├── SOIL.for │ │ │ ├── SOLAR.for │ │ │ ├── SPAM.for │ │ │ ├── UFGA7801.SBA │ │ │ ├── UFGA7801.SBT │ │ │ ├── UFGA7801.SBX │ │ │ ├── UFGA7801.WTH │ │ │ ├── UTILS.for │ │ │ ├── WTHMOD.for │ │ │ ├── Warning.for │ │ │ ├── input_sub.for │ │ │ └── weathr.for │ │ ├── dssat-PET │ │ │ ├── ASMDM.for │ │ │ ├── AUTHAR.for │ │ │ ├── AUTPLT.for │ │ │ ├── CANOPY.for │ │ │ ├── CHEMICAL.for │ │ │ ├── CO2047.WDA │ │ │ ├── CO2VAL.for │ │ │ ├── COMGEN.blk │ │ │ ├── COMIBS.blk │ │ │ ├── COMSOI.blk │ │ │ ├── COMSWI.blk │ │ │ ├── CROPGRO.for │ │ │ ├── CSM.for │ │ │ ├── CSMVersion.for │ │ │ ├── CSUTS.for │ │ │ ├── DATA.CDE │ │ │ ├── DATA_STMT_HACK.for │ │ │ ├── DATES.for │ │ │ ├── DEMAND.for │ │ │ ├── DETAIL.CDE │ │ │ ├── DSSAT47.INH │ │ │ ├── DSSAT47.INP │ │ │ ├── DSSATPRO.L47 │ │ │ ├── DSSBatch.v47 │ │ │ ├── Denit_Ceres.for │ │ │ ├── ERROR.for │ │ │ ├── ESR_SoilEvap.for │ │ │ ├── ETPHOT.for │ │ │ ├── ETPHR.for │ │ │ ├── Fert_Place.for │ │ │ ├── Flood_Chem.for │ │ │ ├── Flood_Irrig.for │ │ │ ├── FreshWt.for │ │ │ ├── GROW.for │ │ │ ├── HMET.for │ │ │ ├── HRes_CGRO.for │ │ │ ├── INCOMP.for │ │ │ ├── INFIL.for │ │ │ ├── INFO.OUT │ │ │ ├── INSOIL.for │ │ │ ├── INTRO.for │ │ │ ├── IPCHEM.for │ │ │ ├── IPENV.for │ │ │ ├── IPIBS.for │ │ │ ├── IPMAN.for │ │ │ ├── IPPARM.for │ │ │ ├── IPPEST.for │ │ │ ├── IPPLNT.for │ │ │ ├── IPPROG.for │ │ │ ├── IPSIM.for │ │ │ ├── IPSLIN.for │ │ │ ├── IPSOIL.for │ │ │ ├── IPSOIL_Inp.for │ │ │ ├── IPTILL.for │ │ │ ├── IPVAR.for │ │ │ ├── IPWTH_alt.for │ │ │ ├── IRRIG.for │ │ │ ├── Info.for │ │ │ ├── Ipphenol.for │ │ │ ├── LAND.for │ │ │ ├── LINDM.for │ │ │ ├── LMATCH.for │ │ │ ├── MOBIL.for │ │ │ ├── MODEL.ERR │ │ │ ├── MULCHEVAP.for │ │ │ ├── MULCHLAYER.for │ │ │ ├── MULCHWAT.for │ │ │ ├── Makefile │ │ │ ├── MgmtOps.for │ │ │ ├── ModuleDefs.for │ │ │ ├── N2O_mod.for │ │ │ ├── NCHECK_inorg.for │ │ │ ├── NCHECK_organic.for │ │ │ ├── NFIX.for │ │ │ ├── NFLUX.for │ │ │ ├── NUPTAK.for │ │ │ ├── OM_Place.for │ │ │ ├── OPETPHOT.for │ │ │ ├── OPGEN.for │ │ │ ├── OPHARV.for │ │ │ ├── OPHEAD.for │ │ │ ├── OPMULCH.for │ │ │ ├── OPPEST.for │ │ │ ├── OPSOILNI.for │ │ │ ├── OPSTRESS.for │ │ │ ├── OPSUM.for │ │ │ ├── OPTEMPXY2K.for │ │ │ ├── OPVIEW.for │ │ │ ├── OPWBAL.for │ │ │ ├── OPWEATH.for │ │ │ ├── OSDefinitions.for │ │ │ ├── OUTPUT.CDE │ │ │ ├── OUTPUT.LST │ │ │ ├── OVERVIEW.OUT │ │ │ ├── OXLAYER.for │ │ │ ├── OpFlood.for │ │ │ ├── OpPlantP.for │ │ │ ├── OpSoilKi.for │ │ │ ├── OpSoilOrg.for │ │ │ ├── OpStemp.for │ │ │ ├── Opgrow.for │ │ │ ├── PATH.for │ │ │ ├── PEST.for │ │ │ ├── PESTCP.for │ │ │ ├── PET.for │ │ │ ├── PHENOL.for │ │ │ ├── PHOTO.for │ │ │ ├── PODS.for │ │ │ ├── PPlantSubs.for │ │ │ ├── P_CGRO.for │ │ │ ├── P_IPPLNT.for │ │ │ ├── P_Plant.for │ │ │ ├── P_Uptake.for │ │ │ ├── Paddy_Mgmt.for │ │ │ ├── PlantNBal.OUT │ │ │ ├── PlantNBal.for │ │ │ ├── README.md │ │ │ ├── READS.for │ │ │ ├── RESCH047.SDA │ │ │ ├── RESPIR.for │ │ │ ├── RETC_VG.for │ │ │ ├── RNOFF.for │ │ │ ├── ROOTDM.for │ │ │ ├── ROOTS.for │ │ │ ├── ROOTWU.for │ │ │ ├── RStages.for │ │ │ ├── RUN-CMD │ │ │ ├── RootSoilVol.for │ │ │ ├── RunList.OUT │ │ │ ├── RunList.for │ │ │ ├── SATFLO.for │ │ │ ├── SAVE-DSSBatch.v47 │ │ │ ├── SBGRO047.CUL │ │ │ ├── SBGRO047.ECO │ │ │ ├── SBGRO047.SPE │ │ │ ├── SDCOMP.for │ │ │ ├── SEEDDM.for │ │ │ ├── SENES.for │ │ │ ├── SIMULATION.CDE │ │ │ ├── SOIL.SOL │ │ │ ├── SOIL.for │ │ │ ├── SOILDYN.for │ │ │ ├── SOILNI.for │ │ │ ├── SOLAR.for │ │ │ ├── SPAM.for │ │ │ ├── SPSUBS.for │ │ │ ├── STEMP.for │ │ │ ├── SoilK_init.for │ │ │ ├── SoilKi.for │ │ │ ├── SoilMixing.for │ │ │ ├── SoilNBalSum.for │ │ │ ├── SoilNiBal.OUT │ │ │ ├── SoilNiBal.for │ │ │ ├── SoilNi_init.for │ │ │ ├── SoilNoBal.OUT │ │ │ ├── SoilNoPoBal.for │ │ │ ├── SoilOrg.for │ │ │ ├── SoilOrg_init.for │ │ │ ├── SoilPi.for │ │ │ ├── SoilWatBal.OUT │ │ │ ├── SolNBalSum.OUT │ │ │ ├── TILEDRAIN.for │ │ │ ├── TRANS.for │ │ │ ├── TextureClass.for │ │ │ ├── TillEvent.for │ │ │ ├── Tillage.for │ │ │ ├── UFGA7801.SBA │ │ │ ├── UFGA7801.SBT │ │ │ ├── UFGA7801.SBX │ │ │ ├── UFGA7801.WTH │ │ │ ├── UTILS.for │ │ │ ├── VEGDM.for │ │ │ ├── VEGGR.for │ │ │ ├── WATBAL.for │ │ │ ├── WBAL.for │ │ │ ├── WBSUBS.for │ │ │ ├── WEATHR_Inp.for │ │ │ ├── WTHMOD.for │ │ │ ├── WTHSET.for │ │ │ ├── Warning.for │ │ │ ├── diffusiv.for │ │ │ ├── fort.12 │ │ │ ├── fort.777 │ │ │ ├── input_sub.for │ │ │ ├── ipexp.for │ │ │ ├── nox_pulse.f90 │ │ │ ├── optempy2k.for │ │ │ ├── plant.for │ │ │ ├── save-IPMAN.for │ │ │ ├── save-ModuleDefs.for │ │ │ ├── save-OPVIEW.for │ │ │ ├── save-RunList.for │ │ │ └── weathr.for │ │ ├── mfmm_01 │ │ │ ├── CSMVersion.for │ │ │ ├── Makefile │ │ │ ├── ModuleDefs.for │ │ │ ├── OSDefinitions.for │ │ │ ├── README.md │ │ │ └── main.for │ │ └── mfmm_02 │ │ │ ├── Makefile │ │ │ ├── README.md │ │ │ ├── REF-basin_aqu_aa.txt │ │ │ ├── REF-basin_crop_yld_aa.txt │ │ │ ├── REF-basin_crop_yld_yr.txt │ │ │ ├── REF-basin_pw_yr.txt │ │ │ ├── REF-basin_wb_aa.txt │ │ │ ├── REF-basin_wb_yr.txt │ │ │ ├── REF-channel_sd_yr.txt │ │ │ ├── REF-channel_sdmorph_yr.txt │ │ │ ├── REF-crop_yld_aa.txt │ │ │ ├── REF-files_out.out │ │ │ ├── REF-hru_pw_aa.txt │ │ │ ├── REF-hru_wb_aa.txt │ │ │ ├── actions.f90 │ │ │ ├── albedo.f90 │ │ │ ├── allocate_parms.f90 │ │ │ ├── aqu2d_init.f90 │ │ │ ├── aqu2d_read.f90 │ │ │ ├── aqu_1d_control.f90 │ │ │ ├── aqu_catunit.ele │ │ │ ├── aqu_cha.lin │ │ │ ├── aqu_initial.f90 │ │ │ ├── aqu_pesticide_module.f90 │ │ │ ├── aqu_pesticide_output.f90 │ │ │ ├── aqu_read.f90 │ │ │ ├── aqu_read_elements.f90 │ │ │ ├── aqu_read_init.f90 │ │ │ ├── aqu_unit.ele │ │ │ ├── aquifer.aqu │ │ │ ├── aquifer.con │ │ │ ├── aquifer_module.f90 │ │ │ ├── aquifer_output.f90 │ │ │ ├── ascrv.f90 │ │ │ ├── atri.f90 │ │ │ ├── aunif.f90 │ │ │ ├── basin_aqu_pest_output.f90 │ │ │ ├── basin_aquifer_output.f90 │ │ │ ├── basin_ch_pest_output.f90 │ │ │ ├── basin_chanmorph_output.f90 │ │ │ ├── basin_channel_output.f90 │ │ │ ├── basin_ls_pest_output.f90 │ │ │ ├── basin_module.f90 │ │ │ ├── basin_output.f90 │ │ │ ├── basin_print_codes_read.f90 │ │ │ ├── basin_prm_default.f90 │ │ │ ├── basin_read_cc.f90 │ │ │ ├── basin_read_objs.f90 │ │ │ ├── basin_read_prm.f90 │ │ │ ├── basin_recall_output.f90 │ │ │ ├── basin_res_pest_output.f90 │ │ │ ├── basin_reservoir_output.f90 │ │ │ ├── basin_sdchannel_output.f90 │ │ │ ├── cal_allo_init.f90 │ │ │ ├── cal_cond_read.f90 │ │ │ ├── cal_conditions.f90 │ │ │ ├── cal_parm_read.f90 │ │ │ ├── cal_parm_select.f90 │ │ │ ├── cal_parmchg_read.f90 │ │ │ ├── calhard_control.f90 │ │ │ ├── calibration_data_module.f90 │ │ │ ├── calsoft_ave_output.f90 │ │ │ ├── calsoft_chsed.f90 │ │ │ ├── calsoft_control.f90 │ │ │ ├── calsoft_hyd.f90 │ │ │ ├── calsoft_plant.f90 │ │ │ ├── calsoft_read_codes.f90 │ │ │ ├── calsoft_sed.f90 │ │ │ ├── calsoft_sum_output.f90 │ │ │ ├── caltsoft_hyd.f90 │ │ │ ├── carbon_module.f90 │ │ │ ├── cbn_zhang2.f90 │ │ │ ├── ccw01.pcp │ │ │ ├── ccw01.tmp │ │ │ ├── ch_initial.f90 │ │ │ ├── ch_pesticide_module.f90 │ │ │ ├── ch_rchinit.f90 │ │ │ ├── ch_rchuse.f90 │ │ │ ├── ch_read.f90 │ │ │ ├── ch_read_elements.f90 │ │ │ ├── ch_read_hyd.f90 │ │ │ ├── ch_read_init.f90 │ │ │ ├── ch_read_nut.f90 │ │ │ ├── ch_read_orders_cal.f90 │ │ │ ├── ch_read_parms_cal.f90 │ │ │ ├── ch_read_sed.f90 │ │ │ ├── ch_rtday.f90 │ │ │ ├── ch_rthsed.f90 │ │ │ ├── ch_rtmusk.f90 │ │ │ ├── ch_rtout.f90 │ │ │ ├── ch_rtpath.f90 │ │ │ ├── ch_rtpest.f90 │ │ │ ├── ch_rtsed.f90 │ │ │ ├── ch_rtsed_Molinas_Wu.f90 │ │ │ ├── ch_rtsed_bagnold.f90 │ │ │ ├── ch_rtsed_kodatie.f90 │ │ │ ├── ch_rtsed_yangsand.f90 │ │ │ ├── ch_ttcoef.f90 │ │ │ ├── ch_watqual3.f90 │ │ │ ├── ch_watqual4.f90 │ │ │ ├── ch_watqual_semi_analitical_function.f90 │ │ │ ├── cha_pesticide_output.f90 │ │ │ ├── chan-surf.lin │ │ │ ├── chan_surf.lin │ │ │ ├── chandeg.con │ │ │ ├── channel-lte.cha │ │ │ ├── channel.cha │ │ │ ├── channel_allo.f90 │ │ │ ├── channel_control.f90 │ │ │ ├── channel_data_module.f90 │ │ │ ├── channel_module.f90 │ │ │ ├── channel_output.f90 │ │ │ ├── channel_surf_link.f90 │ │ │ ├── channel_velocity_module.f90 │ │ │ ├── chem_app.ops │ │ │ ├── chg_par.f90 │ │ │ ├── cli_atmodep_time_control.f90 │ │ │ ├── cli_bounds_check.f90 │ │ │ ├── cli_clgen.f90 │ │ │ ├── cli_dstn1.f90 │ │ │ ├── cli_hmeas.f90 │ │ │ ├── cli_initwgn.f90 │ │ │ ├── cli_pgen.f90 │ │ │ ├── cli_pgenhr.f90 │ │ │ ├── cli_pmeas.f90 │ │ │ ├── cli_precip_control.f90 │ │ │ ├── cli_read_atmodep.f90 │ │ │ ├── cli_rhgen.f90 │ │ │ ├── cli_slrgen.f90 │ │ │ ├── cli_smeas.f90 │ │ │ ├── cli_staread.f90 │ │ │ ├── cli_tgen.f90 │ │ │ ├── cli_tmeas.f90 │ │ │ ├── cli_weatgn.f90 │ │ │ ├── cli_wgnread.f90 │ │ │ ├── cli_wmeas.f90 │ │ │ ├── cli_wndgen.f90 │ │ │ ├── climate_control.f90 │ │ │ ├── climate_module.f90 │ │ │ ├── cntable.lum │ │ │ ├── cntbl_read.f90 │ │ │ ├── codes.bsn │ │ │ ├── command.f90 │ │ │ ├── conditional_module.f90 │ │ │ ├── conditions.f90 │ │ │ ├── cons_prac_read.f90 │ │ │ ├── cons_practice.lum │ │ │ ├── constit_db_read.f90 │ │ │ ├── constit_hyd_mult.f90 │ │ │ ├── constituent_mass_module.f90 │ │ │ ├── curno.f90 │ │ │ ├── define_unit_elements.f90 │ │ │ ├── diagnostics.out │ │ │ ├── dr_db_read.f90 │ │ │ ├── dr_module.f90 │ │ │ ├── dr_read_hmet.f90 │ │ │ ├── dr_read_om.f90 │ │ │ ├── dr_read_path.f90 │ │ │ ├── dr_read_pest.f90 │ │ │ ├── dr_read_salt.f90 │ │ │ ├── dr_ru.f90 │ │ │ ├── dtbl_flocon_read.f90 │ │ │ ├── dtbl_lum_read.f90 │ │ │ ├── dtbl_res_read.f90 │ │ │ ├── dtbl_scen_read.f90 │ │ │ ├── ee.f90 │ │ │ ├── ero_cfactor.f90 │ │ │ ├── ero_eiusle.f90 │ │ │ ├── ero_ovrsed.f90 │ │ │ ├── ero_pkq.f90 │ │ │ ├── ero_ysed.f90 │ │ │ ├── et_act.f90 │ │ │ ├── et_pot.f90 │ │ │ ├── exco_db_read.f90 │ │ │ ├── exco_module.f90 │ │ │ ├── exco_read_hmet.f90 │ │ │ ├── exco_read_om.f90 │ │ │ ├── exco_read_path.f90 │ │ │ ├── exco_read_pest.f90 │ │ │ ├── exco_read_salt.f90 │ │ │ ├── expo.f90 │ │ │ ├── fcgd.f90 │ │ │ ├── fert_parm_read.f90 │ │ │ ├── fertilizer.frt │ │ │ ├── fertilizer_data_module.f90 │ │ │ ├── field.fld │ │ │ ├── field_read.f90 │ │ │ ├── file.cio │ │ │ ├── files_out.out │ │ │ ├── flo_con.dtl │ │ │ ├── flow_dur_curve.f90 │ │ │ ├── gcycl.f90 │ │ │ ├── graze.ops │ │ │ ├── harv.ops │ │ │ ├── header_aquifer.f90 │ │ │ ├── header_channel.f90 │ │ │ ├── header_hyd.f90 │ │ │ ├── header_mgt.f90 │ │ │ ├── header_path.f90 │ │ │ ├── header_pest.f90 │ │ │ ├── header_reservoir.f90 │ │ │ ├── header_sd_channel.f90 │ │ │ ├── header_snutc.f90 │ │ │ ├── header_wetland.f90 │ │ │ ├── header_write.f90 │ │ │ ├── header_yield.f90 │ │ │ ├── hmet_hru_aqu_read.f90 │ │ │ ├── hru-data.hru │ │ │ ├── hru.con │ │ │ ├── hru_allo.f90 │ │ │ ├── hru_control.f90 │ │ │ ├── hru_dtbl_actions_init.f90 │ │ │ ├── hru_hyds.f90 │ │ │ ├── hru_lte_control.f90 │ │ │ ├── hru_lte_module.f90 │ │ │ ├── hru_lte_output.f90 │ │ │ ├── hru_lte_read.f90 │ │ │ ├── hru_module.f90 │ │ │ ├── hru_output.f90 │ │ │ ├── hru_output_allo.f90 │ │ │ ├── hru_pathogen_output.f90 │ │ │ ├── hru_pesticide_output.f90 │ │ │ ├── hru_read.f90 │ │ │ ├── hru_sweep.f90 │ │ │ ├── hru_urb_bmp.f90 │ │ │ ├── hru_urban.f90 │ │ │ ├── hru_urbanhr.f90 │ │ │ ├── hrudb_init.f90 │ │ │ ├── hyd-sed-lte.cha │ │ │ ├── hyd_connect.f90 │ │ │ ├── hyd_connect_out.f90 │ │ │ ├── hyd_read_connect.f90 │ │ │ ├── hyddep_output.f90 │ │ │ ├── hydin_output.f90 │ │ │ ├── hydout_output.f90 │ │ │ ├── hydro_init.f90 │ │ │ ├── hydrograph_module.f90 │ │ │ ├── hydrol_read.f90 │ │ │ ├── hydrology.cha │ │ │ ├── hydrology.hyd │ │ │ ├── hydrology_data_module.f90 │ │ │ ├── initial.aqu │ │ │ ├── initial.cha │ │ │ ├── input_file_module.f90 │ │ │ ├── jdt.f90 │ │ │ ├── landuse.lum │ │ │ ├── landuse_data_module.f90 │ │ │ ├── landuse_read.f90 │ │ │ ├── layersplit.f90 │ │ │ ├── lcu_read_softcal.f90 │ │ │ ├── ls_link.f90 │ │ │ ├── ls_read_parms_cal.f90 │ │ │ ├── ls_unit.def │ │ │ ├── ls_unit.ele │ │ │ ├── lsu_output.f90 │ │ │ ├── lsu_read_elements.f90 │ │ │ ├── lum.dtl │ │ │ ├── main.f90 │ │ │ ├── management.sch │ │ │ ├── maximum_data_module.f90 │ │ │ ├── mgt_harvbiomass.f90 │ │ │ ├── mgt_harvgrain.f90 │ │ │ ├── mgt_harvtuber.f90 │ │ │ ├── mgt_killop.f90 │ │ │ ├── mgt_newtillmix.f90 │ │ │ ├── mgt_operations_module.f90 │ │ │ ├── mgt_operatn.f90 │ │ │ ├── mgt_read_chemapp.f90 │ │ │ ├── mgt_read_fireops.f90 │ │ │ ├── mgt_read_grazeops.f90 │ │ │ ├── mgt_read_harvops.f90 │ │ │ ├── mgt_read_irrops.f90 │ │ │ ├── mgt_read_mgtops.f90 │ │ │ ├── mgt_read_sweepops.f90 │ │ │ ├── mgt_sched.f90 │ │ │ ├── mgt_tillfactor.f90 │ │ │ ├── nut_denit.f90 │ │ │ ├── nut_nitvol.f90 │ │ │ ├── nut_nlch.f90 │ │ │ ├── nut_nminrl.f90 │ │ │ ├── nut_np_flow.f90 │ │ │ ├── nut_nrain.f90 │ │ │ ├── nut_orgn.f90 │ │ │ ├── nut_orgnc.f90 │ │ │ ├── nut_orgnc2.f90 │ │ │ ├── nut_pminrl.f90 │ │ │ ├── nut_pminrl2.f90 │ │ │ ├── nut_psed.f90 │ │ │ ├── nut_solp.f90 │ │ │ ├── nutbal.bsn │ │ │ ├── nutrients.cha │ │ │ ├── nutrients.sol │ │ │ ├── nuts.f90 │ │ │ ├── obj_output.f90 │ │ │ ├── object.cnt │ │ │ ├── object.prt │ │ │ ├── object_read_output.f90 │ │ │ ├── om_water.ini │ │ │ ├── om_water_init.f90 │ │ │ ├── organic_mineral_mass_module.f90 │ │ │ ├── output_landscape_init.f90 │ │ │ ├── output_landscape_module.f90 │ │ │ ├── output_ls_pathogen_module.f90 │ │ │ ├── output_ls_pesticide_module.f90 │ │ │ ├── output_ls_salt_module.f90 │ │ │ ├── overbank_read.f90 │ │ │ ├── overland_n_read.f90 │ │ │ ├── ovn_table.lum │ │ │ ├── parameters.bsn │ │ │ ├── path_cha_res_read.f90 │ │ │ ├── path_hru_aqu_read.f90 │ │ │ ├── path_ls_process.f90 │ │ │ ├── path_ls_runoff.f90 │ │ │ ├── path_ls_swrouting.f90 │ │ │ ├── path_parm_read.f90 │ │ │ ├── pathogen_data_module.f90 │ │ │ ├── pathogen_init.f90 │ │ │ ├── pathogens.pth │ │ │ ├── pcp.cli │ │ │ ├── pest_apply.f90 │ │ │ ├── pest_cha_res_read.f90 │ │ │ ├── pest_decay.f90 │ │ │ ├── pest_enrsb.f90 │ │ │ ├── pest_hru_aqu_read.f90 │ │ │ ├── pest_lch.f90 │ │ │ ├── pest_parm_read.f90 │ │ │ ├── pest_pesty.f90 │ │ │ ├── pest_soil_tot.f90 │ │ │ ├── pest_washp.f90 │ │ │ ├── pesticide.pst │ │ │ ├── pesticide_data_module.f90 │ │ │ ├── pesticide_init.f90 │ │ │ ├── pl_biomass_gro.f90 │ │ │ ├── pl_burnop.f90 │ │ │ ├── pl_community.f90 │ │ │ ├── pl_dormant.f90 │ │ │ ├── pl_fert.f90 │ │ │ ├── pl_graze.f90 │ │ │ ├── pl_grow.f90 │ │ │ ├── pl_leaf_gro.f90 │ │ │ ├── pl_leaf_senes.f90 │ │ │ ├── pl_moisture_gro_init.f90 │ │ │ ├── pl_moisture_senes_init.f90 │ │ │ ├── pl_mortality.f90 │ │ │ ├── pl_nfix.f90 │ │ │ ├── pl_nup.f90 │ │ │ ├── pl_nupd.f90 │ │ │ ├── pl_nut_demand.f90 │ │ │ ├── pl_partition.f90 │ │ │ ├── pl_pup.f90 │ │ │ ├── pl_pupd.f90 │ │ │ ├── pl_read_parms_cal.f90 │ │ │ ├── pl_read_regions_cal.f90 │ │ │ ├── pl_root_gro.f90 │ │ │ ├── pl_rootfr.f90 │ │ │ ├── pl_seed_gro.f90 │ │ │ ├── pl_tstr.f90 │ │ │ ├── pl_waterup.f90 │ │ │ ├── plant.ini │ │ │ ├── plant_all_init.f90 │ │ │ ├── plant_data_module.f90 │ │ │ ├── plant_init.f90 │ │ │ ├── plant_module.f90 │ │ │ ├── plant_parm_read.f90 │ │ │ ├── plantparm_init.f90 │ │ │ ├── plants.plt │ │ │ ├── plantwx.bsn │ │ │ ├── print.prt │ │ │ ├── proc_allo.f90 │ │ │ ├── proc_bsn.f90 │ │ │ ├── proc_cal.f90 │ │ │ ├── proc_cha.f90 │ │ │ ├── proc_cond.f90 │ │ │ ├── proc_date_time.f90 │ │ │ ├── proc_db.f90 │ │ │ ├── proc_hru.f90 │ │ │ ├── proc_open.f90 │ │ │ ├── proc_read.f90 │ │ │ ├── proc_res.f90 │ │ │ ├── qman.f90 │ │ │ ├── re_initialize.f90 │ │ │ ├── read_mgtops.f90 │ │ │ ├── readcio_read.f90 │ │ │ ├── readpcom.f90 │ │ │ ├── readtime_read.f90 │ │ │ ├── rec_read_elements.f90 │ │ │ ├── recall_module.f90 │ │ │ ├── recall_output.f90 │ │ │ ├── recall_read.f90 │ │ │ ├── regres.f90 │ │ │ ├── res_allo.f90 │ │ │ ├── res_control.f90 │ │ │ ├── res_hydro.f90 │ │ │ ├── res_initial.f90 │ │ │ ├── res_nutrient.f90 │ │ │ ├── res_objects.f90 │ │ │ ├── res_pest.f90 │ │ │ ├── res_pesticide_module.f90 │ │ │ ├── res_pesticide_output.f90 │ │ │ ├── res_read.f90 │ │ │ ├── res_read_elements.f90 │ │ │ ├── res_read_hyd.f90 │ │ │ ├── res_read_init.f90 │ │ │ ├── res_read_nut.f90 │ │ │ ├── res_read_sed.f90 │ │ │ ├── res_read_weir.f90 │ │ │ ├── res_rel.dtl │ │ │ ├── res_sediment.f90 │ │ │ ├── reservoir_data_module.f90 │ │ │ ├── reservoir_module.f90 │ │ │ ├── reservoir_output.f90 │ │ │ ├── rls_routesoil.f90 │ │ │ ├── rls_routesurf.f90 │ │ │ ├── rls_routetile.f90 │ │ │ ├── rout_unit.con │ │ │ ├── rout_unit.def │ │ │ ├── rout_unit.ele │ │ │ ├── rout_unit.rtu │ │ │ ├── rte_read_nut.f90 │ │ │ ├── ru_allo.f90 │ │ │ ├── ru_control.f90 │ │ │ ├── ru_module.f90 │ │ │ ├── ru_output.f90 │ │ │ ├── ru_read.f90 │ │ │ ├── ru_read_elements.f90 │ │ │ ├── salt_cha_res_read.f90 │ │ │ ├── salt_hru_aqu_read.f90 │ │ │ ├── salt_hru_init.f90 │ │ │ ├── scen_lu.dtl │ │ │ ├── scen_read_bmpuser.f90 │ │ │ ├── scen_read_filtstrip.f90 │ │ │ ├── scen_read_grwway.f90 │ │ │ ├── sd_chanmorph_output.f90 │ │ │ ├── sd_channel_control.f90 │ │ │ ├── sd_channel_module.f90 │ │ │ ├── sd_channel_output.f90 │ │ │ ├── sd_channel_read.f90 │ │ │ ├── sd_channel_surf_link.f90 │ │ │ ├── sd_hydsed_init.f90 │ │ │ ├── sd_hydsed_read.f90 │ │ │ ├── sdr_read.f90 │ │ │ ├── search.f90 │ │ │ ├── sediment.cha │ │ │ ├── sep_biozone.f90 │ │ │ ├── sep_read.f90 │ │ │ ├── septic.sep │ │ │ ├── septic.str │ │ │ ├── septic_data_module.f90 │ │ │ ├── septic_parm_read.f90 │ │ │ ├── sim_initday.f90 │ │ │ ├── sim_inityr.f90 │ │ │ ├── smp_bmpfixed.f90 │ │ │ ├── smp_buffer.f90 │ │ │ ├── smp_filter.f90 │ │ │ ├── smp_grass_wway.f90 │ │ │ ├── snow.sno │ │ │ ├── snowdb_read.f90 │ │ │ ├── soil_data_module.f90 │ │ │ ├── soil_db_read.f90 │ │ │ ├── soil_lte_db_read.f90 │ │ │ ├── soil_module.f90 │ │ │ ├── soil_nutcarb_init.f90 │ │ │ ├── soil_nutcarb_output.f90 │ │ │ ├── soil_nutcarb_write.f90 │ │ │ ├── soil_phys_init.f90 │ │ │ ├── soil_plant.ini │ │ │ ├── soil_plant_init.f90 │ │ │ ├── soils.sol │ │ │ ├── soils_init.f90 │ │ │ ├── soils_lte.sol │ │ │ ├── soiltest_all_init.f90 │ │ │ ├── soiltest_init.f90 │ │ │ ├── solt_db_read.f90 │ │ │ ├── sq_canopyint.f90 │ │ │ ├── sq_crackflow.f90 │ │ │ ├── sq_crackvol.f90 │ │ │ ├── sq_dailycn.f90 │ │ │ ├── sq_daycn.f90 │ │ │ ├── sq_greenampt.f90 │ │ │ ├── sq_snom.f90 │ │ │ ├── sq_surfst.f90 │ │ │ ├── sq_volq.f90 │ │ │ ├── stmp_solt.f90 │ │ │ ├── stor_surfstor.f90 │ │ │ ├── structure_set_parms.f90 │ │ │ ├── surface.f90 │ │ │ ├── sweep.ops │ │ │ ├── swr_depstor.f90 │ │ │ ├── swr_drains.f90 │ │ │ ├── swr_latsed.f90 │ │ │ ├── swr_origtile.f90 │ │ │ ├── swr_percmacro.f90 │ │ │ ├── swr_percmain.f90 │ │ │ ├── swr_percmicro.f90 │ │ │ ├── swr_satexcess.f90 │ │ │ ├── swr_substor.f90 │ │ │ ├── swr_subwq.f90 │ │ │ ├── temperature.cha │ │ │ ├── terrace.str │ │ │ ├── theta.f90 │ │ │ ├── tiles_data_module.f90 │ │ │ ├── till_parm_read.f90 │ │ │ ├── tillage.til │ │ │ ├── tillage_data_module.f90 │ │ │ ├── time.sim │ │ │ ├── time_conc_init.f90 │ │ │ ├── time_control.f90 │ │ │ ├── time_module.f90 │ │ │ ├── tmp.cli │ │ │ ├── topo_read.f90 │ │ │ ├── topography.hyd │ │ │ ├── topography_data_module.f90 │ │ │ ├── topohyd_init.f90 │ │ │ ├── ttcoef_wway.f90 │ │ │ ├── unit_hyd.f90 │ │ │ ├── urban.urb │ │ │ ├── urban_data_module.f90 │ │ │ ├── urban_parm_read.f90 │ │ │ ├── varinit.f90 │ │ │ ├── water_body_module.f90 │ │ │ ├── weather-sta.cli │ │ │ ├── weather-wgn.cli │ │ │ ├── wet_initial.f90 │ │ │ ├── wet_read.f90 │ │ │ ├── wet_read_hyd.f90 │ │ │ ├── wetland_control.f90 │ │ │ ├── wetland_output.f90 │ │ │ ├── xmon.f90 │ │ │ ├── zero0.f90 │ │ │ ├── zero1.f90 │ │ │ ├── zero2.f90 │ │ │ └── zeroini.f90 │ ├── pa_graph_examples │ │ ├── asce-graph.dot │ │ ├── master_variable_list.csv │ │ └── priestley-taylor-graph.dot │ ├── pet_files │ │ ├── NESTED_TEST.for │ │ ├── PETDYN.for │ │ ├── PETPEN.for │ │ └── PETPNO.for │ ├── save │ │ ├── arrays │ │ │ ├── arrays-basic-01.f │ │ │ ├── arrays-basic-06.f │ │ │ └── save-arrays.f │ │ ├── derived_types │ │ │ ├── derived_save.f │ │ │ └── derived_save.py │ │ ├── file_handles │ │ │ ├── INPUT-FILE.txt │ │ │ └── save-03.f │ │ └── simple_variables │ │ │ ├── save-01.f │ │ │ ├── save-02.f │ │ │ └── save-02.py │ ├── select_case │ │ ├── select01.f │ │ ├── select02.f │ │ ├── select02.py │ │ ├── select02_GrFN.json │ │ ├── select02_lambdas.py │ │ ├── select02_lambdas_numpy.py │ │ ├── select03.f │ │ ├── select04.f │ │ ├── select05.f │ │ ├── select06.f │ │ ├── select07.f │ │ ├── select08.f │ │ └── select09.f │ ├── stop │ │ └── test_stop.f │ └── strings │ │ ├── Translation │ │ ├── str01.py │ │ ├── str02.py │ │ ├── str03.py │ │ ├── str04.py │ │ ├── str05.py │ │ ├── str06.py │ │ └── str07.py │ │ ├── str01.f │ │ ├── str02.f │ │ ├── str03.f │ │ ├── str04.f │ │ ├── str05.f │ │ ├── str06.f │ │ ├── str06.py │ │ ├── str07.f │ │ ├── str08.f │ │ └── str09.f └── uncharted │ └── graph_api │ └── create-example-sep2021.json └── wm ├── _test_rest_api.py ├── debug_rest_api.py ├── scripts ├── 0_edges.json ├── 3nodes_1_edge.json ├── 3nodes_2_edges.json ├── 3nodes_edges.json ├── 3nodes_model.json ├── 3nodes_projection.json ├── causemos_api_3.0.0 │ ├── edit-edges │ ├── edit-indicators │ ├── experiment-create │ ├── experiment-get │ ├── model-create │ ├── model-status │ └── training-progress ├── dyse-graph-like1.json ├── edit-edges ├── edit-indicators ├── experiment-create ├── experiment-get ├── get_delphi_url ├── get_experiment_results ├── get_system_status ├── model-create ├── model-status └── training-progress ├── test_cpp_evaluation.py └── test_cpp_extensions.py /.clang-format: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ml4ai/delphi/HEAD/.clang-format -------------------------------------------------------------------------------- /.codecov.yml: -------------------------------------------------------------------------------- 1 | ignore: 2 | - "tests" 3 | -------------------------------------------------------------------------------- /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ml4ai/delphi/HEAD/.dockerignore -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- 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