├── .github ├── FUNDING.yml └── workflows │ └── tests.yml ├── .gitignore ├── BENCHMARKS.md ├── CITATION ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── __init__.py ├── deploy-test.sh ├── deploy.sh ├── docs ├── AIMI-stanford.jpg ├── Makefile ├── auc-all.jpg ├── carestream-logo.png ├── cifar-logo.png ├── mila-logo.png ├── pathology-mask-rsna2.png ├── pathology-mask-rsna3.png ├── pathology-mask-rsna614-da.png ├── requirements.txt ├── segmentation-pspnet.png ├── source │ ├── _static │ │ ├── CovariateDataset-Diagram.png │ │ ├── covariate.png │ │ └── segmentation-pspnet.png │ ├── conf.py │ ├── dataset_helpers.rst │ ├── datasets.rst │ ├── index.rst │ └── models.rst └── torchxrayvision-logo.png ├── pep8.sh ├── requirements-dev.txt ├── requirements.txt ├── scripts ├── CrossReferenceWithNIH │ ├── CXR_crossref-old.ipynb │ ├── CXR_crossref.ipynb │ ├── cxrmatch.py │ ├── rsnamatches.pkl │ ├── test_labels.csv.zip │ ├── utils.py │ └── validation_labels.csv.zip ├── README.md ├── autoencoder.ipynb ├── convert-all.sh ├── convert-single.sh ├── cxr_age_prediction.ipynb ├── dataset_utils.py ├── dataset_verify.py ├── heatmaps.ipynb ├── kaggle_dicom_headers.py ├── model_calibrate.py ├── model_calibrate_notebook.ipynb ├── process_batch.py ├── process_image.py ├── race_prediction.ipynb ├── run.sh ├── segmentation-clavicle.ipynb ├── segmentation.ipynb ├── sex_prediction.ipynb ├── train_ae.py ├── train_model.py ├── train_utils.py ├── train_utils_ae.py ├── transfer_learning.ipynb ├── view_classifier.ipynb ├── xray_covariate_shift_example.ipynb ├── xray_datasets-CovariateShift.ipynb ├── xray_datasets.ipynb ├── xray_datasets_covariateshift-figure.ipynb ├── xray_datasets_views.ipynb ├── xray_masks.ipynb ├── xray_models.ipynb ├── xray_representations.ipynb └── xray_trajectory.ipynb ├── setup.py ├── tests ├── 00000001_000.png ├── 00027426_000.png ├── 1.2.276.0.7230010.3.1.4.8323329.6904.1517875201.850819.dcm ├── 16747_3_1.jpg ├── Fake_MONOHR1.dcm ├── covid-19-pneumonia-58-prior.jpg ├── test_baseline_models.py ├── test_baseline_models_seg.py ├── test_covid_dataloader.py ├── test_dataloaders.py ├── test_dicom_reader.py ├── test_mira_sex_comprehensive.py └── test_models.py └── torchxrayvision ├── __init__.py ├── _version.py ├── autoencoders.py ├── baseline_models ├── __init__.py ├── chestx_det │ ├── LICENSE.txt │ ├── __init__.py │ └── ptsemseg │ │ ├── __init__.py │ │ ├── pspnet.py │ │ └── utils.py ├── chexpert │ ├── __init__.py │ ├── model.py │ └── predict_configs.json ├── emory_hiti │ └── __init__.py ├── jfhealthcare │ ├── LICENSE-2.0.txt │ ├── README.md │ ├── __init__.py │ ├── config │ │ ├── __init__.py │ │ └── example.json │ └── model │ │ ├── __init__.py │ │ ├── attention_map.py │ │ ├── backbone │ │ ├── __init__.py │ │ ├── densenet.py │ │ ├── inception.py │ │ └── vgg.py │ │ ├── classifier.py │ │ ├── global_pool.py │ │ └── utils.py ├── mira │ └── __init__.py ├── riken │ ├── LICENSE │ └── __init__.py └── xinario │ ├── LICENSE │ └── __init__.py ├── data ├── BBox_List_2017.csv.gz ├── Data_Entry_2017_v2020.csv.gz ├── NLMCXR_reports.tgz ├── PADCHEST_chest_x_ray_images_labels_160K_01.02.19.csv.gz ├── chexpert_train.csv.gz ├── google2019_nih-chest-xray-labels.csv.gz ├── kaggle_stage_2_train_images_dicom_headers.csv.gz ├── kaggle_stage_2_train_labels.csv.zip ├── nlmcxr_dicom_metadata.csv.gz ├── nlmcxr_tsne_pa.csv.gz ├── semantic_masks_v7labs_lungs.zip ├── siim-pneumothorax-train-rle.csv.gz └── vinbigdata-train.csv.gz ├── datasets.py ├── models.py └── utils.py /.github/FUNDING.yml: -------------------------------------------------------------------------------- 1 | # These are supported funding model platforms 2 | 3 | github: ieee8023 4 | -------------------------------------------------------------------------------- /.github/workflows/tests.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mlmed/torchxrayvision/HEAD/.github/workflows/tests.yml 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