├── .gitignore ├── README.md ├── __init__.py ├── tagsim ├── SimObject.py ├── SimPSD.py ├── __init__.py ├── base_im_generation.py ├── image_db │ ├── image_0046.jpg │ ├── image_0099.jpg │ ├── n01440764_334.JPEG │ ├── n02782093_69.JPEG │ ├── n02783161_330.JPEG │ ├── n02790996_17.JPEG │ ├── n02791124_288.JPEG │ ├── n02794156_51.JPEG │ ├── n02795169_1716.JPEG │ ├── n02797295_1.JPEG │ ├── n02814533_76.JPEG │ ├── n02814860_1600.JPEG │ ├── n02814860_2327.JPEG │ ├── n02825657_49.JPEG │ ├── n02835271_323.JPEG │ ├── n02871525_919.JPEG │ ├── n02939185_1166.JPEG │ ├── n02951358_343.JPEG │ ├── n02971356_300.JPEG │ ├── n02974003_72.JPEG │ ├── n02978881_964.JPEG │ ├── n02980441_2530.JPEG │ ├── n02980441_53.JPEG │ ├── n02988304_826.JPEG │ ├── n03016953_1549.JPEG │ ├── n03032252_824.JPEG │ ├── n03042490_70.JPEG │ ├── n03063599_372.JPEG │ ├── n03085013_1188.JPEG │ ├── n03100240_1832.JPEG │ ├── n03127925_102.JPEG │ ├── n03201208_8.JPEG │ ├── n03216828_918.JPEG │ ├── n03272562_548.JPEG │ ├── n03297495_638.JPEG │ ├── n03447447_42.JPEG │ ├── n03459775_440.JPEG │ ├── n03478589_953.JPEG │ ├── obj74__205.ppm │ ├── obj92__355.ppm │ ├── obj98__345.ppm │ ├── obj98__50.ppm │ ├── obj99__240.ppm │ └── obj99__335.ppm ├── notebooks │ ├── cardiac_sim.ipynb │ ├── demo_DENSE.ipynb │ ├── demo_simple_tagging.ipynb │ ├── demo_tagging_options.ipynb │ └── save_gifs.py ├── perlin.py ├── pygrid_internal │ ├── .vscode │ │ ├── c_cpp_properties.json │ │ └── settings.json │ ├── __init__.py │ ├── cuda │ │ ├── cu_gridder.cu │ │ ├── cu_gridder_standalone.cu │ │ ├── cu_gridder_standalone.cubin │ │ └── cu_gridder_standalone.ptx │ ├── grid_kernel.py │ ├── notebooks │ │ ├── fft_benchmark.ipynb │ │ ├── test_kernels.ipynb │ │ ├── test_pygrid.ipynb │ │ ├── test_pygrid2.ipynb │ │ └── test_pygrid3d.ipynb │ ├── pygrid.py │ ├── setup.py │ ├── src │ │ ├── c_grid.c │ │ ├── c_grid.cpp │ │ ├── c_grid.pyx │ │ ├── c_grid_xcode.cpp │ │ ├── c_grid_xcode.pyx │ │ ├── c_gridder.cpp │ │ └── c_gridder_xcode.cpp │ └── utils.py ├── setup.py ├── setup_xcode.py ├── sim_cardiacmotion.py ├── sim_fullmotion.py ├── src_interp │ ├── interp2d.c │ ├── interp2d.pyx │ ├── interp_temp2d.c │ └── interp_temp2d.pyx └── utils.py └── torch_track ├── __init__.py ├── datagen.py ├── loss_utils.py ├── network_resnet2.py ├── network_saves └── resnet2_grid_tracking.pt ├── network_utils.py ├── notebooks └── demo_inference.ipynb ├── sample_data └── in_vivo_data.npz ├── train.py ├── utils.py └── utils_anim.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mloecher/tag_tracking/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mloecher/tag_tracking/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: 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