├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── RcppExports.R ├── TMBtools-package.R ├── export_models.R ├── gamma_ADFun.R ├── hadamard.R ├── helpers.R ├── norm_ADFun.R ├── old │ └── tmb_package_skeleton.R ├── tmb_create_package.R └── use_tmb.R ├── README.md ├── examples ├── tmb_create_package.R └── tmb_package_skeleton.R ├── inst ├── include │ └── TMBtools │ │ └── MatrixIP.hpp └── templates │ ├── GammaNLL.hpp │ ├── Makevars │ ├── Makevars.win │ ├── NAMESPACE │ ├── NormalNLL.hpp │ ├── TMBExports.cpp │ ├── compile.R │ ├── gamma_ADFun.R │ ├── init_dummy_file.cpp │ ├── norm_ADFun.R │ ├── old │ ├── DESCRIPTION │ ├── Read_and_delete_me │ └── tmb_examples.R │ ├── package.R │ ├── test-gamma_ADFun.R │ └── test-norm_ADFun.R ├── man ├── TMBtools-package.Rd ├── export_models.Rd ├── gamma_ADFun.Rd ├── hadamard.Rd ├── norm_ADFun.Rd ├── tmb_create_package.Rd └── use_tmb.Rd ├── src ├── Hadamard.cpp ├── Makevars ├── Makevars.win ├── RcppExports.cpp └── TMB │ ├── 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