├── .env.example ├── .gitignore ├── .project-root ├── LICENSE ├── README.md ├── configs ├── dataset.yaml ├── hyperparameter_sweep.yaml └── pretrain_model_defaults.yaml ├── env.yml ├── notebooks ├── .ipynb_checkpoints │ └── Build Task DataFrames-checkpoint.ipynb ├── Build Task DataFrames.ipynb ├── Speed, Memory, and Disk Comparisons.ipynb └── Visualize ESD.ipynb ├── scripts ├── build_and_profile_dataset.sh ├── build_dataset.sh ├── launch_hyperparameter_tuning.sh ├── launch_wandb_agent.sh ├── pretrain.sh ├── run_FT_eval.sh └── run_zero_shot_eval.sh └── task_labelers ├── README.md ├── __init__.py ├── in_hosp_mort.py └── readmission.py /.env.example: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mmcdermott/MIMICIV_FMs_public/HEAD/.env.example -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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