├── .cruft.json ├── .github └── workflows │ ├── build_image.yaml │ ├── deploy-docs.yml │ ├── pypi-publish.yml │ └── qc.yml ├── .gitignore ├── Dockerfile ├── LICENSE ├── Makefile ├── README.md ├── assets ├── figures_keynote.key ├── monarch_activated.png ├── monarch_plugin_search.png ├── plugin_store_menu.png └── selecting_gpt4_plugins.png ├── docker-compose.yml ├── docs ├── Makefile ├── conf.py ├── index.rst └── make.bat ├── poetry.lock ├── pyproject.toml ├── requirements.txt ├── src └── oai_monarch_plugin │ ├── .well-known │ └── ai-plugin.json │ ├── __init__.py │ ├── cli.py │ ├── logger_config.py │ ├── main.py │ ├── middlewares.py │ ├── routers │ ├── __init__.py │ ├── config.py │ ├── disease_to_gene.py │ ├── disease_to_phenotype.py │ ├── entity.py │ ├── gene_to_disease.py │ ├── gene_to_phenotype.py │ ├── models.py │ ├── phenotype_profile_search.py │ ├── phenotype_to_disease.py │ ├── phenotype_to_gene.py │ ├── search.py │ └── utils.py │ └── static │ └── logo.png ├── tests ├── 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