├── IGVF_analysis ├── scripts_cellbender │ ├── merge_tissue_adatas_post_cb.py │ ├── scanpy_preprocessing.py │ ├── scanpy_preprocessing.sh │ ├── scanpy_subcluster.py │ └── scanpy_subcluster_change_res.py └── tissue_paths_cellbender │ ├── Adrenal_paths.txt │ ├── CortexHippocampus_paths.txt │ ├── DiencephalonPituitary_paths.txt │ ├── Gastrocnemius_paths.txt │ ├── GonadsFemale_paths.txt │ ├── GonadsMale_paths.txt │ ├── Heart_paths.txt │ ├── HypothalamusPituitary_paths.txt │ ├── Kidney_paths.txt │ ├── Liver_paths.txt │ └── PBMC_paths.txt ├── README.md ├── annotation ├── Adrenal.ipynb ├── CortexHippocampus.ipynb ├── DiencephalonPituitary.ipynb ├── Gastrocnemius.ipynb ├── GonadsFemale.ipynb ├── GonadsMale.ipynb ├── Heart.ipynb ├── Kidney.ipynb ├── Liver.ipynb ├── PBMC.ipynb └── post_cellbender_annotations.csv ├── barcodes ├── bc_data_R3_v3.csv ├── bc_data_n102_R1_v3_3.csv ├── bc_data_n192_v4.csv ├── bc_data_n208_R1_v3_3.csv ├── bc_data_n24_v4.csv ├── bc_data_n26_R1_v3_3.csv ├── bc_data_n96_v4.csv ├── bc_data_v1.csv └── bc_data_v2.csv ├── configs ├── IGVF_003_barcode_sample_map.tsv ├── IGVF_004_barcode_sample_map.tsv ├── IGVF_005_barcode_sample_map.tsv ├── IGVF_007_barcode_sample_map.tsv ├── IGVF_008B_barcode_sample_map.tsv ├── IGVF_008_barcode_sample_map.tsv ├── IGVF_009_barcode_sample_map.tsv ├── IGVF_010_barcode_sample_map.tsv ├── IGVF_011_barcode_sample_map.tsv ├── IGVF_012_barcode_sample_map.tsv ├── IGVF_015_barcode_sample_map.tsv ├── IGVF_B01_barcode_sample_map.tsv ├── config.yml ├── igvf_003_config.tsv ├── igvf_003_ex_config.tsv ├── igvf_004_config.tsv ├── igvf_004_ex_config.tsv ├── igvf_005_config.tsv ├── igvf_005_ex_config.tsv ├── igvf_007_config.tsv ├── igvf_007_ex_config.tsv ├── igvf_008_config.tsv ├── igvf_008b_config.tsv ├── igvf_008b_ex_config.tsv ├── igvf_009_config.tsv ├── igvf_009_ex_config.tsv ├── igvf_010_config.tsv ├── igvf_010_ex_config.tsv ├── igvf_011_config.tsv ├── igvf_011_ex_config.tsv ├── igvf_012_config.tsv ├── igvf_013_config.tsv ├── igvf_014_config.tsv ├── igvf_015_config.tsv ├── igvf_019_config.tsv ├── igvf_020_config.tsv ├── igvf_021_config.tsv ├── igvf_024a_config.tsv ├── igvf_b01_config.tsv └── sample_metadata.csv ├── snakemake ├── Snakefile_003_EX.smk ├── Snakefile_004_EX.smk ├── Snakefile_005_EX.smk ├── Snakefile_007_EX.smk ├── Snakefile_008b_EX.smk ├── Snakefile_009_EX.smk ├── Snakefile_010_EX.smk ├── Snakefile_011_EX.smk ├── Snakefile_019.smk ├── Snakefile_020.smk ├── Snakefile_021.smk ├── Snakefile_024a_QC.smk ├── Snakefile_b01.smk ├── envs │ └── kb_env.yaml └── utils.py └── uci_parse_workflow.png /IGVF_analysis/scripts_cellbender/merge_tissue_adatas_post_cb.py: -------------------------------------------------------------------------------- 1 | import scanpy as sc 2 | import pandas as pd 3 | import anndata as ad 4 | 5 | 6 | tissues = ['Kidney'] 7 | 8 | for tis in tissues: 9 | 10 | paths = pd.read_table(f'../tissue_paths_cellbender/{tis}_paths.txt', header = None) 11 | 12 | ad_list = [] 13 | 14 | # Loop through the list of files 15 | for file_name in paths[0]: 16 | print(file_name) 17 | adata = sc.read_h5ad(file_name + '/adata.h5ad') 18 | ad_list.append(adata) 19 | 20 | # # Concatenate the list of Anndata objects 21 | concatenated_ad = ad.concat(ad_list, merge = 'same', label = None) 22 | 23 | concatenated_ad.write_h5ad(f'../cellbender_tissues/{tis}.h5ad') 24 | -------------------------------------------------------------------------------- /IGVF_analysis/scripts_cellbender/scanpy_preprocessing.py: -------------------------------------------------------------------------------- 1 | import scanpy as sc 2 | import pandas as pd 3 | import leidenalg 4 | import anndata as ad 5 | import argparse 6 | 7 | def main(): 8 | parser = argparse.ArgumentParser(description='Process tissue adata from pipeline with cellbender.') 9 | parser.add_argument('-f', '--file', type=str, help='input file path') 10 | 11 | args = parser.parse_args() 12 | 13 | if args.file: 14 | process_file(args.file) 15 | else: 16 | print("Please provide a file using -f option.") 17 | 18 | def process_file(file_path): 19 | print("Processing file:", file_path) 20 | 21 | adata = sc.read_h5ad('../cellbender_tissues/' + file_path) 22 | filename = file_path 23 | tissue = filename.replace(".h5ad", "") 24 | 25 | print("Unfiltered:", adata.shape, flush=True) 26 | 27 | adata = adata[adata.obs['Genotype'] != 'tie'] 28 | print("No ties:", adata.shape, flush=True) 29 | 30 | ### filtering data ### 31 | adata = adata[adata.obs['total_counts_raw'] > 500, :] # UMI cutoff 32 | print(">500 UMIs:", adata.shape, flush=True) 33 | 34 | adata = adata[adata.obs['total_counts_raw'] < 150000, :] 35 | print("<150000 UMIs:", adata.shape, flush=True) 36 | 37 | adata = adata[adata.obs['n_genes_by_counts_cb'] > 250, :] # min number of genes per cell 38 | print(">250 genes:", adata.shape, flush=True) 39 | 40 | if tissue == 'PBMC': 41 | adata = adata[adata.obs['pct_counts_mt_cb'] < 20, :] 42 | print("<20% mt:", adata.shape, flush=True) 43 | else: 44 | adata = adata[adata.obs['pct_counts_mt_cb'] < 1, :] 45 | print("<1% mt:", adata.shape, flush=True) 46 | 47 | # filter cells by doublet score (scrublet) 48 | adata = adata[adata.obs['doublet_score'] < 0.25, :] 49 | print("<0.25 doublet score:", adata.shape, flush=True) 50 | 51 | ### normalize the data ### 52 | sc.pp.normalize_total(adata, target_sum=1e4, layers=None, inplace=True) # Counts per 10k 53 | sc.pp.log1p(adata, layer=None) 54 | 55 | ### calculate highly variable genes ### 56 | # highly variable genes are used to compute the clustering 57 | sc.pp.highly_variable_genes(adata, min_mean=0.0125, max_mean=3, min_disp=0.5) 58 | 59 | adatas = adata[:, adata.var.highly_variable] 60 | 61 | print("Regressing....") 62 | sc.pp.regress_out(adatas, ['pct_counts_mt_cb','n_genes_by_counts_cb']) 63 | sc.pp.scale(adatas, max_value=10) 64 | 65 | print("PCA....") 66 | sc.tl.pca(adatas, svd_solver='arpack', mask_var="highly_variable") 67 | sc.pp.neighbors(adatas, n_neighbors=20, n_pcs=30) 68 | 69 | print("Clustering....") 70 | sc.tl.leiden(adatas, resolution = 1) 71 | sc.tl.umap(adatas, min_dist = 0.5, spread =2.0) 72 | 73 | adata.uns['neighbors'] = adatas.uns['neighbors'] 74 | adata.uns['leiden'] = adatas.uns['leiden'] 75 | adata.uns['umap'] = adatas.uns['umap'] 76 | adata.obs['leiden'] = adatas.obs['leiden'] 77 | adata.obsm = adatas.obsm 78 | adata.obsp = adatas.obsp 79 | 80 | adata.write_h5ad("../cellbender_tissues/" + tissue +'_processed.h5ad') 81 | 82 | if __name__ == "__main__": 83 | main() 84 | -------------------------------------------------------------------------------- /IGVF_analysis/scripts_cellbender/scanpy_preprocessing.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | #SBATCH --job-name=scpp ## Name of the job 3 | #SBATCH -A SEYEDAM_LAB ## account to charge 4 | #SBATCH --nodes=1 ## (-N) number of nodes to use 5 | #SBATCH -p highmem 6 | #SBATCH --cpus-per-task=1 ## number of cores the job needsi 7 | #SBATCH --output=%x.%j.out 8 | #SBATCH --error=%x.%j.err 9 | #SBATCH --mem=256G 10 | #SBATCH --array=1 11 | 12 | source ~/miniconda3/bin/activate scanpy_env 13 | 14 | tissue_files=('PBMC.h5ad') 15 | 16 | # Get the index corresponding to the array job task ID 17 | index=$((SLURM_ARRAY_TASK_ID - 1)) 18 | 19 | # Extract the filename using the index 20 | filename=${tissue_files[$index]} 21 | 22 | # Run the Python script with the selected filename 23 | python scanpy_preprocessing_liz.py -f $filename 24 | -------------------------------------------------------------------------------- /IGVF_analysis/scripts_cellbender/scanpy_subcluster.py: -------------------------------------------------------------------------------- 1 | import argparse 2 | import scanpy as sc 3 | 4 | def main(): 5 | parser = argparse.ArgumentParser(description='Process tissue adata from pipeline with cellbender.') 6 | parser.add_argument('-t', '--tissue', type=str, help='Tissue', required=True) 7 | parser.add_argument('-c', '--clusters', type=str, nargs='+', help='List of clusters to sub-cluster', required=True) 8 | parser.add_argument('-r', '--resolution', type=float, help='Leiden clustering resolution', required=True) 9 | 10 | args = parser.parse_args() 11 | 12 | print(f"Resolution: {args.resolution}") 13 | 14 | if args.tissue and args.clusters: 15 | process_file(args.tissue, args.clusters, args.resolution) 16 | else: 17 | print("Please provide a tissue using -t option and clusters using -c option.") 18 | 19 | def process_file(tissue, clusters, res): 20 | print("Processing tissue:", tissue) 21 | 22 | # Read the .h5ad file 23 | adata = sc.read_h5ad(f'../cellbender_tissues/processed/{tissue}_processed.h5ad') 24 | 25 | for cluster in clusters: 26 | print(f"Sub-clustering for cluster: {cluster}") 27 | 28 | # Determine the clustering base column 29 | base_column = 'leiden' if 'leiden_R' not in adata.obs.columns else 'leiden_R' 30 | 31 | # Perform Leiden clustering on the current cluster 32 | sc.tl.leiden(adata, restrict_to=(base_column, [cluster]), resolution=res) 33 | 34 | # Save the processed file 35 | output_path = f'../cellbender_tissues/processed/{tissue}_processed_subclustered_res{res}.h5ad' 36 | adata.obs['leiden_R'] = adata.obs['leiden_R'].str.replace(',', '_') 37 | adata.write_h5ad(output_path) 38 | 39 | print(f"Processed data saved to: {output_path}") 40 | 41 | if __name__ == "__main__": 42 | main() 43 | -------------------------------------------------------------------------------- /IGVF_analysis/scripts_cellbender/scanpy_subcluster_change_res.py: -------------------------------------------------------------------------------- 1 | import argparse 2 | import scanpy as sc 3 | 4 | def main(): 5 | parser = argparse.ArgumentParser(description='Process tissue adata from pipeline with cellbender.') 6 | parser.add_argument('-t', '--tissue', type=str, help='Tissue', required=True) 7 | parser.add_argument('-c', '--clusters', type=str, nargs='+', help='List of clusters to sub-cluster', required=True) 8 | parser.add_argument('-r', '--resolutions', type=float, nargs='+', help='List of Leiden clustering resolutions', required=True) 9 | 10 | args = parser.parse_args() 11 | 12 | if args.tissue and args.clusters and args.resolutions: 13 | if len(args.clusters) != len(args.resolutions): 14 | print("Error: The number of clusters and resolutions must be the same.") 15 | return 16 | 17 | process_file(args.tissue, args.clusters, args.resolutions) 18 | else: 19 | print("Please provide a tissue using -t option, clusters using -c option, and resolutions using -r option.") 20 | 21 | 22 | def process_file(tissue, clusters, resolutions): 23 | print("Processing tissue:", tissue) 24 | 25 | # Read the .h5ad file 26 | adata = sc.read_h5ad(f'../cellbender_tissues/{tissue}_processed.h5ad') 27 | 28 | for cluster, res in zip(clusters, resolutions): 29 | print(f"Sub-clustering for cluster: {cluster} with resolution: {res}") 30 | 31 | # Determine the clustering base column 32 | base_column = 'leiden' if 'leiden_R' not in adata.obs.columns else 'leiden_R' 33 | 34 | # Perform Leiden clustering on the current cluster with the specified resolution 35 | sc.tl.leiden(adata, restrict_to=(base_column, [cluster]), resolution=res) 36 | 37 | # Save the processed file 38 | output_path = f'../cellbender_tissues/{tissue}_processed_subclustered.h5ad' 39 | adata.obs['leiden_R'] = adata.obs['leiden_R'].str.replace(',', '_') 40 | adata.write_h5ad(output_path) 41 | 42 | print(f"Processed data saved to: {output_path}") 43 | 44 | if __name__ == "__main__": 45 | main() 46 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/Adrenal_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_008b/Adrenal 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_012/Adrenal 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_009/Adrenal 4 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_008/Adrenal 5 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/CortexHippocampus_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_012/CortexHippocampus 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_011/CortexHippocampus 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_003/CortexHippocampus 4 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/DiencephalonPituitary_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_012/DiencephalonPituitary 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_007/DiencephalonPituitary 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_005/DiencephalonPituitary 4 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/Gastrocnemius_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_010/Gastrocnemius 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_012/Gastrocnemius 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_011/Gastrocnemius 4 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/GonadsFemale_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_008b/GonadsFemale 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_007/GonadsFemale 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_008/GonadsFemale 4 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/GonadsMale_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_008b/GonadsMale 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_007/GonadsMale 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_008/GonadsMale 4 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/Heart_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_012/Heart 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_004/Heart 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_003/Heart 4 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/HypothalamusPituitary_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_012/HypothalamusPituitary 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_007_500UMI/HypothalamusPituitary 3 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_005/HypothalamusPituitary 4 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/Kidney_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_010/Kidney 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_009/Kidney 3 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/Liver_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_004/Liver 2 | /share/crsp/lab/seyedam/share/share/igvf_pipeline/igvf_005/Liver 3 | -------------------------------------------------------------------------------- /IGVF_analysis/tissue_paths_cellbender/PBMC_paths.txt: -------------------------------------------------------------------------------- 1 | /share/crsp/lab/seyedam/share/igvf_pipeline/igvf_013/PBMC 2 | /share/crsp/lab/seyedam/share/igvf_pipeline/igvf_014/PBMC 3 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # Parse Biosciences Split-seq pre-processing workflow for HPC cluster 2 | ## Background: Combinatorial barcoding for snRNA-seq 3 | Combinatorial or split-pool barcoding appends a unique **set** of barcodes to single cells or nuclei during multiple "rounds". These reactions are confined to each individual fixed and permeabilized cell, bypassing the need for physical barriers between cells such as microwells or nanodroplets. 4 | 5 | This workflow is designed to pre-process mouse data from the [Parse Biosciences](https://www.parsebiosciences.com/) Evercode whole-transcriptome (“WT”) mini, 100k, and 1M barcoding kits. Versions 1, 2, and 3 of the barcoding chemistry are all supported. As of October 2024, genome and annotation is fixed at mm39 and vM32. This split-pool method may differ from others such as SHARE-seq due to using of both oligo-dT and random hexamer primers during the first round of reverse transcription-based barcoding. The goal in using both primers is to span the entire transcript for more full-length coverage and to avoid polyA-biased reads. After all 3 round of barcoding, aliquots of cells are lysed and libraries are prepared from barcoded cDNA. At the end of short-read library prep, a final Illumina barcode is added to identify these lysed aliquots, or "subpools", and libraries are sequenced and demultiplexed as subpools containing a mix of all the samples on the plate. 6 | 7 | ## Workflow overview 8 | 9 | The main deviation from the official company pipeline is the mapping/quantification software and custom handling of sample merging to produce Python [anndata](https://anndata.readthedocs.io/en/latest/) objects grouped by tissue for downstream processing with [scanpy](https://scanpy.readthedocs.io/en/stable/). This workflow is based on the [kb-python](https://www.kallistobus.tools/kb_usage/kb_count/) (kallisto/bustools) suite, the official snRNA-seq tools for IGVF, and also includes optional code in place for genetic demultiplexing of individuals from sample barcoding wells loaded with 2 individuals with distinct genotypes. 10 | 11 | 12 | 13 | This workflow does the following: 14 | 15 | 1. **Pseudoalignment** with [kb count](https://github.com/pachterlab/kb_python): Associate reads with their cells/nuclei of origin, collapse duplicated reads according to unique molecular identifiers (UMIs), collapse reads from oligo-dT and random hexamer primers in the same well (`counts_unfiltered_modified`), and generate subpool-level cell x gene matrices. 16 | 2. **Genetic demultiplexing** with [klue](https://github.com/Yenaled/klue): Optionally, quantify reads associated with distinct genotypes for each cell & merge with cellbender adata. Assign genotype with higher count number between 2 expected genotypes, `tie` otherwise. 17 | 3. **Background removal** with [cellbender](https://cellbender.readthedocs.io/en/latest/index.html): Remove ambient RNA / PCR chimeras from data and filter cells/nuclei. 18 | 4. **Add metadata and doublet scores** with [scanpy](https://scanpy.readthedocs.io/en/stable/): Merge [sample metadata](https://github.com/mortazavilab/parse_pipeline/blob/main/configs/sample_metadata.csv) with cellbender output by sample barcode-to-well mapping to create a cellbender-filtered adata complete with sample and subpool information. Perform doublet scoring within scanpy using [scrublet](https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.scrublet.html). 19 | 5. **Merge** samples across subpools by tissue for downstream analysis. 20 | 21 | ## Input data 22 | Subpool FASTQ Files: 23 | - Subpool_1_R1.fastq.gz (contains cDNA) 24 | - Subpool_1_R2.fastq.gz (contains the cell barcode and UMI) 25 | 26 | Fastq files split by multiple lanes are ok, e.g. 27 | - Subpool_2_S1_L001_R1_001.fastq.gz 28 | - Subpool_2_S1_L001_R2_001.fastq.gz 29 | - Subpool_2_S1_L003_R1_001.fastq.gz 30 | - Subpool_2_S1_L003_R2_001.fastq.gz 31 | etc. 32 | 33 | Read name is not used directly in the pipeline, can be formatted however. Just need to specify the relevant information in the fastq config file. 34 | 35 | ## Setup instructions 36 | Note: Written for and tested on UCI's HPC. Follow these steps if you are using this workflow for the first time. 37 | 38 | ### Clone this repository 39 | Clone this branch. 40 | ```bash 41 | git clone https://github.com/mortazavilab/parse_pipeline.git 42 | ``` 43 | ### Set up an interactive tmux session on HPC 44 | 1. Remember your login node or choose your favorite out of i15, i16, i17. You can switch login nodes via ssh, e.g. `ssh login-i15` 45 | 2. Start tmux session via `tmux new -s mysession`, or whatever you want to name it. When you need to reconnect, type `tmux a -t mysession` ([tmux cheatsheet](https://tmuxcheatsheet.com/)) from the **same login node** as when you started the session. This is so if your internet goes out or you have to close your laptop, ongoing processes won't be terminated. 46 | 3. Start interactive session: `srun -A SEYEDAM_LAB --cpus-per-task=1 --mem 32G --pty bash -i`. This is so you don't clog up the login node. We shouldn't need a lot since we are just installing packages and running snakemake, which will launch more computationally-intensive jobs for you. 47 | 48 | ### Create a conda environment called snakemake using python 3.9 49 | 1. `conda install -n base -c conda-forge mamba` 50 | 2. `mamba create -n snakemake -c conda-forge -c bioconda snakemake==7.32 python==3.9 scanpy==1.10.2 pandas==2.2.2 anndata==0.10.9 scikit-image==0.24.0` 51 | 3. `pip install --no-cache-dir -U git+https://github.com/broadinstitute/CellBender.git@04c2f5b460721fd55cf62a4cd23617b2555d69b8` for the latest CellBender version (3.2.0). (Yes unfortunately you need to install cellbender on this environment as well in order to use `anndata_from_h5` from `cellbender.remove_background.downstream` when making the adata from CellBender output.) 52 | 53 | ### Create a conda environment called cellbender using python 3.7 54 | Tried multiple times to get CellBender working in the main snakemake environment with python 3.9 but to no avail; it's a [known version issue regarding saving the checkpoint file](https://github.com/broadinstitute/CellBender/issues/371). The checkpoint is very convenient in case the run fails due to lack of memory or job timeout, so I think the up-front effort in creating a second conda environment is worth it. Following the [installation instructions for CellBender](https://cellbender.readthedocs.io/en/latest/installation/index.html): 55 | 56 | 1. `mamba create -n cellbender python=3.7` 57 | 3. `mamba activate cellbender` 58 | 4. `mamba install -c anaconda pytables` 59 | 5. `pip install torch==1.13.1` 60 | 6. `pip install --no-cache-dir -U git+https://github.com/broadinstitute/CellBender.git@04c2f5b460721fd55cf62a4cd23617b2555d69b8` for the latest CellBender version (3.2.0). 61 | 62 | ### Install klue 63 | Klue installation instructions: 64 | 1. `git clone https://github.com/Yenaled/klue` 65 | 2. `cd klue` 66 | 3. `mkdir build` 67 | 4. `cd build` 68 | 5. `cmake ..` 69 | 6. `make` 70 | 7. `make install` 71 | 72 | If step 7 does not work, follow these steps: 73 | 1. `cd src` (within the build folder) 74 | 2. `pwd` and copy the path, for example mine is `/dfs5/bio/erebboah/klue/build/src` 75 | 3. Then edit your `~/.bashrc` by adding this line to the bottom of the file: `export PATH=":$PATH"`. For example I added `export PATH="/dfs5/bio/erebboah/klue/build/src:$PATH` 76 | 4. `source ~/.bashrc` 77 | 78 | Test installation by typing `klue` in the terminal, should see version and usage information. 79 | 80 | ## Create / edit input files 81 | 1. Make a fastq config file with columns that match the many examples in the configs folder, e.g. [igvf_004_config.tsv](https://github.com/mortazavilab/parse_pipeline/blob/cellbender_hpc/configs/igvf_004_config.tsv) and save in configs folder. Required columns are **fastq**, **fastq_r2**, **subpool**, **plate**, **lane**, **run**, **droplets_included**, **learning_rate**, and **expected_cells**. The last 3 parameters are specifically for CellBender [parameters of the same name](https://cellbender.readthedocs.io/en/latest/usage/index.html#recommended-best-practices). We recommend entering the same number of cells/nuclei as expected in the subpool (for example 67000 for 1M kits, 13000 for 100k kits) for expected cells, half the default learning rate (0.00005), and approximately 3 times the expected cells for the total droplets included (for example 200000 for 1M kits and 40000 for 100k kits). In the case of subpar CellBender results with these parameters, modify droplets included by including an additional 50,000 or subtracting 50,000 (1M kits). 82 | 2. Update [sample_metadata.csv](https://github.com/fairliereese/parse_pipeline/blob/main/configs/sample_metadata.csv) with relevant metadata for your experiment. The pipeline works on the assumption you have something in the following columns, in order to adhere to a common set of attributes especially when submitting data to the IGVF portal: 83 | - Mouse_Tissue_ID 84 | - Experiment 85 | - bc1_well 86 | - well_type 87 | - SampleType 88 | - Tissue 89 | - Genotype 90 | - Sex 91 | - Age 92 | - Protocol 93 | - Chemistry 94 | - Multiplexed_sample1 95 | - Multiplexed_sample2 96 | - Row 97 | - Column 98 | - DOB 99 | - Age_days 100 | - Body_weight_g 101 | - Estrus_cycle 102 | - Dissection_date 103 | - Dissection_time 104 | - ZT 105 | - Dissector 106 | - Tissue_weight_mg 107 | - Notes 108 | 3. Make a copy of `snakemake/Snakefile.smk` with your experiment name to edit. Keep the copy in the snakemake folder. You can also just edit `Snakefile.smk` directly, but I like to keep a copy of the Snakefile used for each run for my own records. You only need to edit 4 lines maximum in the header region of the file: 109 | - **config_tsv**: Path to the fastq config file which has the paths to your read1 and read2 input fastqs and the plate, lane, run, and sequencing platform. 110 | - **sample_csv**: Path to the sample metadata. I typically update the [Google spreadsheet](https://docs.google.com/spreadsheets/d/13M6-Ry6oXgkx94BHZOGioYPI6F_hWDqjGgcaNu2JNYs/edit#gid=2080239896), download the tab, and upload it to my configs folder. Each row represents a well in the sample barcoding plate with metadata information for that sample, some of which is repeated across all the samples on the plate, such as experiment name, kit, and tissue. 111 | - **kit**: either WT (48 wells), WT_mini (12 wells), or WT_mega (96 wells) 112 | - **chemistry**: either v1, v2, or v3 113 | 114 | ## Run pipeline 115 | Skip steps 1-4 below if you were following the setup instructions and are already in an interactive tmux session. 116 | 117 | 1. Pay attention to your login node, or ssh to your favorite, e.g. `ssh login-i15` 118 | 2. Change directories to your pipeline directory, e.g. `cd /share/crsp/lab/seyedam/erebboah/parse_pipeline`. You MUST be in the `parse_pipeline` directory, not in a sub-directory like `parse_pipeline/configs`, `parse_pipeline/snakemake`, or it will not run. 119 | 3. Start tmux session, e.g. `tmux new -s mysession` 120 | 4. Start interactive session: `srun -A SEYEDAM_LAB --cpus-per-task=1 --mem 32G --pty bash -i` 121 | 5. Activate your snakemake environment: `conda activate snakemake` (you need to activate your snakemake conda environment again even if you were following setup instructions since sourcing the bashrc probably reset it to your base environment) 122 | 6. Check that snakemake is going to run the appropriate jobs (use the -n flag first). Make sure to change `Snakefile.smk` to the one you are actually using! For example, `Snakefile_igvf015.smk` 123 | 124 | ```bash 125 | snakemake \ 126 | -s snakemake/Snakefile.smk \ 127 | -j 50 \ 128 | --latency-wait 120 \ 129 | --use-conda \ 130 | --cluster "sbatch -A {resources.account} --partition={resources.partition} --mem={resources.mem_gb}GB --gres={resources.gres} -c {resources.threads} --time=72:00:00" -n 131 | ``` 132 | 7. Actually run pipeline (no `-n` flag): 133 | ```bash 134 | snakemake \ 135 | -s snakemake/Snakefile.smk \ 136 | -j 50 \ 137 | --latency-wait 120 \ 138 | --use-conda \ 139 | --cluster "sbatch -A {resources.account} --partition={resources.partition} --mem={resources.mem_gb}GB --gres={resources.gres} -c {resources.threads} --time=72:00:00" 140 | ``` 141 | 142 | ### Basic troubleshooting 143 | - FileNotFoundError/No such file or directory: Check your current directory (`pwd`). Make sure the 3 required input files exist and in the correct locations: fastq config e.g. `igvf_###_config.tsv` is in `parse_pipeline/configs`, `sample_metadata.csv` is in `parse_pipeline/configs`, and `Snakemake_###.smk` is in `parse_pipeline/snakemake`. Make sure the fastq config file is spelled correctly in your Snakemake smk file. 144 | - AttributeError: Make sure the columns in `igvf_###_config.tsv` exactly match **fastq**, **fastq_r2**, **subpool**, **plate**, **lane**, **run**, **droplets_included**, **learning_rate**, and **expected_cells**. 145 | - If your fastq or fastq_r2 paths are incorrect, the pipeline will run fine at first. Kallisto runs, symlinked files have the correct name while being wrong, but you get no cells and code downstream of kallisto will probably break. 146 | - If you put the wrong kit/chemistry in the snakemake file, you will get NAN barcodes and the pipeline fails due to an assert() call in the make cellbender adata rule. 147 | 148 | ### Known issues / Wishlist 149 | - Clean up extra files 150 | - klue reference generation runs twice for the F1 plates, in other words it makes both NODJ.idx file and a B6NODF1J.idx file, which for now are identical. And the same for all the other 6 non-B6J genotypes. The good news is that it only runs twice one time...reference generation isn't repeated after the first pipeline run. 151 | - Integrate report code 152 | - Integrate experimentSpecs and analysisSpecs to replace manual metadata curation 153 | - Support human genome 154 | - Support custom humanized loci for Model AD 155 | -------------------------------------------------------------------------------- /barcodes/bc_data_R3_v3.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,stype 2 | 1,AACGTGAT,pbs_1000,A1,L 3 | 2,AAACATCG,pbs_1001,A2,L 4 | 3,ATGCCTAA,pbs_1002,A3,L 5 | 4,AGTGGTCA,pbs_1003,A4,L 6 | 5,ACCACTGT,pbs_1004,A5,L 7 | 6,ACATTGGC,pbs_1005,A6,L 8 | 7,CAGATCTG,pbs_1006,A7,L 9 | 8,CATCAAGT,pbs_1007,A8,L 10 | 9,CGCTGATC,pbs_1008,A9,L 11 | 10,ACAAGCTA,pbs_1009,A10,L 12 | 11,CTGTAGCC,pbs_1010,A11,L 13 | 12,AGTACAAG,pbs_1011,A12,L 14 | 13,AACAACCA,pbs_1012,B1,L 15 | 14,AACCGAGA,pbs_1013,B2,L 16 | 15,AACGCTTA,pbs_1014,B3,L 17 | 16,AAGACGGA,pbs_1015,B4,L 18 | 17,AAGGTACA,pbs_1016,B5,L 19 | 18,ACACAGAA,pbs_1017,B6,L 20 | 19,ACAGCAGA,pbs_1018,B7,L 21 | 20,CTGTCTAT,pbs_1605,B8,L 22 | 21,ACGCTCGA,pbs_1020,B9,L 23 | 22,ACGTATCA,pbs_1021,B10,L 24 | 23,ACTATGCA,pbs_1022,B11,L 25 | 24,AGAGTCAA,pbs_1023,B12,L 26 | 25,AGATCGCA,pbs_1024,C1,L 27 | 26,AGCAGGAA,pbs_1025,C2,L 28 | 27,AGTCACTA,pbs_1026,C3,L 29 | 28,ATCCTGTA,pbs_1027,C4,L 30 | 29,ATTGAGGA,pbs_1028,C5,L 31 | 30,CAACCACA,pbs_1029,C6,L 32 | 31,GACTAGTA,pbs_1030,C7,L 33 | 32,CAATGGAA,pbs_1031,C8,L 34 | 33,CACTTCGA,pbs_1032,C9,L 35 | 34,CAGCGTTA,pbs_1033,C10,L 36 | 35,CATACCAA,pbs_1034,C11,L 37 | 36,CCAGTTCA,pbs_1035,C12,L 38 | 37,CCGAAGTA,pbs_1036,D1,L 39 | 38,CCGTGAGA,pbs_1037,D2,L 40 | 39,GACACTCG,pbs_1606,D3,L 41 | 40,CGAACTTA,pbs_1039,D4,L 42 | 41,CGACTGGA,pbs_1040,D5,L 43 | 42,CGCATACA,pbs_1041,D6,L 44 | 43,CTCAATGA,pbs_1042,D7,L 45 | 44,CTGAGCCA,pbs_1043,D8,L 46 | 45,CTGGCATA,pbs_1044,D9,L 47 | 46,GAATCTGA,pbs_1045,D10,L 48 | 47,CAAGACTA,pbs_1046,D11,L 49 | 48,GAGCTGAA,pbs_1047,D12,L 50 | 49,GATAGACA,pbs_1048,E1,L 51 | 50,GCCACATA,pbs_1049,E2,L 52 | 51,GCGAGTAA,pbs_1050,E3,L 53 | 52,GCTAACGA,pbs_1051,E4,L 54 | 53,GCTCGGTA,pbs_1052,E5,L 55 | 54,GGAGAACA,pbs_1053,E6,L 56 | 55,GGTGCGAA,pbs_1054,E7,L 57 | 56,GTACGCAA,pbs_1055,E8,L 58 | 57,GTCGTAGA,pbs_1056,E9,L 59 | 58,GTCTGTCA,pbs_1057,E10,L 60 | 59,GTGTTCTA,pbs_1058,E11,L 61 | 60,TAGGATGA,pbs_1059,E12,L 62 | 61,TATCAGCA,pbs_1060,F1,L 63 | 62,TCCGTCTA,pbs_1061,F2,L 64 | 63,TCTTCACA,pbs_1062,F3,L 65 | 64,TGAAGAGA,pbs_1063,F4,L 66 | 65,TGGAACAA,pbs_1064,F5,L 67 | 66,TGGCTTCA,pbs_1065,F6,L 68 | 67,TGGTGGTA,pbs_1066,F7,L 69 | 68,TTCACGCA,pbs_1067,F8,L 70 | 69,AACTCACC,pbs_1068,F9,L 71 | 70,AAGAGATC,pbs_1069,F10,L 72 | 71,AAGGACAC,pbs_1070,F11,L 73 | 72,AATCCGTC,pbs_1071,F12,L 74 | 73,AATGTTGC,pbs_1072,G1,L 75 | 74,ACACGACC,pbs_1073,G2,L 76 | 75,ACAGATTC,pbs_1074,G3,L 77 | 76,AGATGTAC,pbs_1075,G4,L 78 | 77,AGCACCTC,pbs_1076,G5,L 79 | 78,AGCCATGC,pbs_1077,G6,L 80 | 79,AGGCTAAC,pbs_1078,G7,L 81 | 80,ATAGCGAC,pbs_1079,G8,L 82 | 81,ATCATTCC,pbs_1080,G9,L 83 | 82,ATTGGCTC,pbs_1081,G10,L 84 | 83,CAAGGAGC,pbs_1082,G11,L 85 | 84,CACCTTAC,pbs_1083,G12,L 86 | 85,CCATCCTC,pbs_1084,H1,L 87 | 86,CCGACAAC,pbs_1085,H2,L 88 | 87,CCTAATCC,pbs_1086,H3,L 89 | 88,AGACTACA,pbs_1607,H4,L 90 | 89,CGACACAC,pbs_1088,H5,L 91 | 90,CGGATTGC,pbs_1089,H6,L 92 | 91,CTAAGGTC,pbs_1090,H7,L 93 | 92,GAACAGGC,pbs_1091,H8,L 94 | 93,GACAGTGC,pbs_1092,H9,L 95 | 94,GAGTTAGC,pbs_1093,H10,L 96 | 95,GATGAATC,pbs_1094,H11,L 97 | 96,GCCAAGAC,pbs_1095,H12,L 98 | -------------------------------------------------------------------------------- /barcodes/bc_data_n102_R1_v3_3.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,stype 2 | 1,CATTCCTA,pbs_1239,A1,T 3 | 2,CTTCATCA,pbs_1205,A2,T 4 | 3,CGTATATC,pbs_1410,A3,T 5 | 4,ACATTTAC,pbs_1211,A4,T 6 | 5,ACTTAGCT,pbs_1218,A5,T 7 | 6,GCAATTCT,pbs_1412,A6,T 8 | 7,GCCTATCT,pbs_1273,A7,T 9 | 8,ATGCTGCT,pbs_1227,A8,T 10 | 9,CATTTACA,pbs_1242,A9,T 11 | 10,ACTCGTAA,pbs_1100,A10,T 12 | 11,TCTTAGCA,pbs_1419,A11,T 13 | 12,ATGCACTT,pbs_1407,A12,T 14 | 13,ATTTGGCA,pbs_1231,B1,T 15 | 14,TTATTCTG,pbs_1118,B2,T 16 | 15,TCATGCTC,pbs_1285,B3,T 17 | 16,CATACTTC,pbs_1202,B4,T 18 | 17,TCGTTCTA,pbs_1416,B5,T 19 | 18,GCTTCATA,pbs_1279,B6,T 20 | 19,CTCTGTGC,pbs_1204,B7,T 21 | 20,TCCTTATA,pbs_1415,B8,T 22 | 21,ACTGCTCT,pbs_1200,B9,T 23 | 22,CTCTAATC,pbs_1257,B10,T 24 | 23,ACGCTTGC,pbs_1404,B11,T 25 | 24,ATCTTAGG,pbs_1224,B12,T 26 | 25,CATGTCTC,pbs_1238,C1,T 27 | 26,TCATTGCA,pbs_1288,C2,T 28 | 27,ACACCTTT,pbs_1209,C3,T 29 | 28,AATTTCTC,pbs_1115,C4,T 30 | 29,ATTCATGG,pbs_1108,C5,T 31 | 30,ACTTTACC,pbs_1220,C6,T 32 | 31,CTTCTAAC,pbs_1267,C7,T 33 | 32,CTATTTCA,pbs_1145,C8,T 34 | 33,TCTCATGC,pbs_1292,C9,T 35 | 34,ATCCTTAC,pbs_1223,C10,T 36 | 35,TAAATATC,pbs_1125,C11,T 37 | 36,TTACCTGC,pbs_1295,C12,T 38 | 37,CACTTTCA,pbs_1236,D1,T 39 | 38,CACCTTTA,pbs_1233,D2,T 40 | 39,CTGACTTC,pbs_1261,D3,T 41 | 40,CATTTGGA,pbs_1141,D4,T 42 | 41,GCTCTACT,pbs_1277,D5,T 43 | 42,GTTACGTA,pbs_1144,D6,T 44 | 43,CATATTGC,pbs_1408,D7,T 45 | 44,CTATCATC,pbs_1203,D8,T 46 | 45,GCTATCAT,pbs_1276,D9,T 47 | 46,ACATTCAT,pbs_1210,D10,T 48 | 47,TTCGCTAC,pbs_1132,D11,T 49 | 48,CATTCTAC,pbs_1240,D12,T 50 | 97,CATCATCC,pbs_1327,A1,R 51 | 98,CTGCTTTG,pbs_1148,A2,R 52 | 99,TGAGTTCG,pbs_1601,A3,R 53 | 100,GCTTATAG,pbs_1166,A4,R 54 | 101,TCTGATCC,pbs_1371,A5,R 55 | 102,TCTCTTGG,pbs_1370,A6,R 56 | 103,CAATTTCC,pbs_1326,A7,R 57 | 104,AGTCTCTT,pbs_1312,A8,R 58 | 105,TGCTGCTC,pbs_1377,A9,R 59 | 106,GTATTTCC,pbs_1346,A10,R 60 | 107,TTCCTGTG,pbs_1388,A11,R 61 | 108,TCTGGCTC,pbs_1372,A12,R 62 | 109,TATGTGTC,pbs_1362,B1,R 63 | 110,CAATTCTC,pbs_1301,B2,R 64 | 111,TGGTCTCC,pbs_1380,B3,R 65 | 112,GCTCTTTA,pbs_1344,B4,R 66 | 113,GCTGCATG,pbs_1159,B5,R 67 | 114,ACTCATTT,pbs_1310,B6,R 68 | 115,AGTCTTGG,pbs_1313,B7,R 69 | 116,GGTTCTTC,pbs_1181,B8,R 70 | 117,TCATGTTG,pbs_1367,B9,R 71 | 118,ATTTTGCC,pbs_1324,B10,R 72 | 119,CTTCTGTA,pbs_1339,B11,R 73 | 120,GTCCATCT,pbs_1348,B12,R 74 | 121,GCTATCTC,pbs_1304,C1,R 75 | 122,TAGTTTCC,pbs_1359,C2,R 76 | 123,TCCATTAT,pbs_1368,C3,R 77 | 124,AGGATTAA,pbs_1175,C4,R 78 | 125,AATCTTTC,pbs_1309,C5,R 79 | 126,GTCATATG,pbs_1160,C6,R 80 | 127,GTGCTTCC,pbs_1351,C7,R 81 | 128,ATGTGTTG,pbs_1319,C8,R 82 | 129,GCATCTTG,pbs_1413,C9,R 83 | 130,TACTGTCT,pbs_1357,C10,R 84 | 131,TTCATCGC,pbs_1173,C11,R 85 | 132,ACTGTGGG,pbs_1311,C12,R 86 | 133,TCTGTGCC,pbs_1373,D1,R 87 | 134,TCAATCTC,pbs_1364,D2,R 88 | 135,GTCCTCTG,pbs_1349,D3,R 89 | 136,TTACATTC,pbs_1386,D4,R 90 | 137,ATTCTGTC,pbs_1322,D5,R 91 | 138,TGTGTATG,pbs_1383,D6,R 92 | 139,TCCATTTG,pbs_1369,D7,R 93 | 140,TTAGCTTC,pbs_1387,D8,R 94 | 141,GTGCTTGA,pbs_1352,D9,R 95 | 142,GTTTGTGA,pbs_1179,D10,R 96 | 143,GAAATTAG,pbs_1174,D11,R 97 | 144,GCAAATTC,pbs_1182,D12,R 98 | 193,GTCTCTGC,pbs_tcrX1,D8,X 99 | 194,GTCTGCTC,pbs_tcrX2,D9,X 100 | 195,TCATTCGC,pbs_tcrX3,D11,X 101 | 199,CCTTTAAC,pbs_tcrX7,A11,X 102 | 200,CCGATGTT,pbs_tcrX8,A4,X 103 | 201,TATTTAAG,pbs_tcrX9,B7,X 104 | -------------------------------------------------------------------------------- /barcodes/bc_data_n192_v4.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,type 2 | 1,CATTCCTA,pbs_1239,A1,T 3 | 2,CTTCATCA,pbs_1205,A2,T 4 | 3,CCTATATC,pbs_1247,A3,T 5 | 4,ACATTTAC,pbs_1211,A4,T 6 | 5,ACTTAGCT,pbs_1218,A5,T 7 | 6,CCAATTCT,pbs_1243,A6,T 8 | 7,GCCTATCT,pbs_1273,A7,T 9 | 8,ATGCTGCT,pbs_1227,A8,T 10 | 9,CATTTACA,pbs_1242,A9,T 11 | 10,ACTCGTAA,pbs_1100,A10,T 12 | 11,CCTTTGCA,pbs_1255,A11,T 13 | 12,ACTCCTGC,pbs_1215,A12,T 14 | 13,ATTTGGCA,pbs_1231,B1,T 15 | 14,TTATTCTG,pbs_1118,B2,T 16 | 15,TCATGCTC,pbs_1285,B3,T 17 | 16,CATACTTC,pbs_1202,B4,T 18 | 17,CCGTTCTA,pbs_1111,B5,T 19 | 18,GCTTCATA,pbs_1279,B6,T 20 | 19,CTCTGTGC,pbs_1204,B7,T 21 | 20,CCCTTATA,pbs_1246,B8,T 22 | 21,ACTGCTCT,pbs_1200,B9,T 23 | 22,CTCTAATC,pbs_1257,B10,T 24 | 23,ACCCTTGC,pbs_1213,B11,T 25 | 24,ATCTTAGG,pbs_1224,B12,T 26 | 25,CATGTCTC,pbs_1238,C1,T 27 | 26,TCATTGCA,pbs_1288,C2,T 28 | 27,ACACCTTT,pbs_1209,C3,T 29 | 28,AATTTCTC,pbs_1115,C4,T 30 | 29,ATTCATGG,pbs_1108,C5,T 31 | 30,ACTTTACC,pbs_1220,C6,T 32 | 31,CTTCTAAC,pbs_1267,C7,T 33 | 32,CTATTTCA,pbs_1145,C8,T 34 | 33,TCTCATGC,pbs_1292,C9,T 35 | 34,ATCCTTAC,pbs_1223,C10,T 36 | 35,TAAATATC,pbs_1125,C11,T 37 | 36,TTACCTGC,pbs_1295,C12,T 38 | 37,CACTTTCA,pbs_1236,D1,T 39 | 38,CACCTTTA,pbs_1233,D2,T 40 | 39,CTGACTTC,pbs_1261,D3,T 41 | 40,CATTTGGA,pbs_1141,D4,T 42 | 41,GCTCTACT,pbs_1277,D5,T 43 | 42,GTTACGTA,pbs_1144,D6,T 44 | 43,CCTGTTGC,pbs_1251,D7,T 45 | 44,CTATCATC,pbs_1203,D8,T 46 | 45,GCTATCAT,pbs_1276,D9,T 47 | 46,ACATTCAT,pbs_1210,D10,T 48 | 47,TTCGCTAC,pbs_1132,D11,T 49 | 48,CATTCTAC,pbs_1240,D12,T 50 | 49,CACTTATC,pbs_1234,E1,T 51 | 50,ATAAGCTC,pbs_1107,E2,T 52 | 51,TCATCCTG,pbs_1284,E3,T 53 | 52,CCTGGTAT,pbs_1250,E4,T 54 | 53,TGGTATAC,pbs_1104,E5,T 55 | 54,TTGGGAGA,pbs_1123,E6,T 56 | 55,ACTTCATC,pbs_1201,E7,T 57 | 56,TCTCTAGC,pbs_1293,E8,T 58 | 57,ATGCCCTT,pbs_1226,E9,T 59 | 58,CCCAATTT,pbs_1245,E10,T 60 | 59,ACTATATA,pbs_1146,E11,T 61 | 60,CTCTATAC,pbs_1258,E12,T 62 | 61,CTGTCTCA,pbs_1263,F1,T 63 | 62,GACCTTTC,pbs_1138,F2,T 64 | 63,GATTTGGC,pbs_1271,F3,T 65 | 64,CGTCTAGG,pbs_1135,F4,T 66 | 65,TACTCGAA,pbs_1140,F5,T 67 | 66,CAGCCTTT,pbs_1237,F6,T 68 | 67,CCTCATTA,pbs_1248,F7,T 69 | 68,CTTATACC,pbs_1264,F8,T 70 | 69,TCTATTAC,pbs_1106,F9,T 71 | 70,CCTGCATT,pbs_1249,F10,T 72 | 71,CAATCCTT,pbs_1232,F11,T 73 | 72,TTGTCTTA,pbs_1121,F12,T 74 | 73,TCACTTTA,pbs_1147,G1,T 75 | 74,TGCTTGGG,pbs_1124,G2,T 76 | 75,CGCTCATT,pbs_1256,G3,T 77 | 76,GCCTCTAT,pbs_1274,G4,T 78 | 77,GAGCACAA,pbs_1142,G5,T 79 | 78,CTCTTAAC,pbs_1260,G6,T 80 | 79,TCTAGGCT,pbs_1291,G7,T 81 | 80,AATTCTGC,pbs_1396,G8,T 82 | 81,CATTCTCA,pbs_1241,G9,T 83 | 82,ACTTGCCT,pbs_1219,G10,T 84 | 83,ATCATTGC,pbs_1222,G11,T 85 | 84,GTTCAACA,pbs_1119,G12,T 86 | 85,CCATTTGC,pbs_1244,H1,T 87 | 86,GACTTTGC,pbs_1269,H2,T 88 | 87,ATTGGCTC,pbs_1081,H3,T 89 | 88,GTGCTAGC,pbs_1127,H4,T 90 | 89,CTTTCAAC,pbs_1268,H5,T 91 | 90,ACTATTGC,pbs_1214,H6,T 92 | 91,ACTGGCTT,pbs_1216,H7,T 93 | 92,ATTAGGCT,pbs_1228,H8,T 94 | 93,GCCTTTCA,pbs_1275,H9,T 95 | 94,ATTCTAGG,pbs_1229,H10,T 96 | 95,CCTTACAT,pbs_1252,H11,T 97 | 96,ACATTTGG,pbs_1212,H12,T 98 | 97,CATCATCC,pbs_1327,A1,R 99 | 98,CTGCTTTG,pbs_1148,A2,R 100 | 99,CTAAGGGA,pbs_1162,A3,R 101 | 100,GCTTATAG,pbs_1166,A4,R 102 | 101,TCTGATCC,pbs_1371,A5,R 103 | 102,TCTCTTGG,pbs_1370,A6,R 104 | 103,CAATTTCC,pbs_1326,A7,R 105 | 104,AGTCTCTT,pbs_1312,A8,R 106 | 105,TGCTGCTC,pbs_1377,A9,R 107 | 106,GTATTTCC,pbs_1346,A10,R 108 | 107,TTCCTGTG,pbs_1388,A11,R 109 | 108,GCTGCTTC,pbs_1345,A12,R 110 | 109,TATGTGTC,pbs_1362,B1,R 111 | 110,CAATTCTC,pbs_1301,B2,R 112 | 111,TGGTCTCC,pbs_1380,B3,R 113 | 112,GCTCTTTA,pbs_1344,B4,R 114 | 113,GCTGCATG,pbs_1159,B5,R 115 | 114,ACTCATTT,pbs_1310,B6,R 116 | 115,AGTCTTGG,pbs_1313,B7,R 117 | 116,GGTTCTTC,pbs_1181,B8,R 118 | 117,TCATGTTG,pbs_1367,B9,R 119 | 118,ATTTTGCC,pbs_1324,B10,R 120 | 119,CTTCTGTA,pbs_1339,B11,R 121 | 120,GTCCATCT,pbs_1348,B12,R 122 | 121,GCTATCTC,pbs_1304,C1,R 123 | 122,TAGTTTCC,pbs_1359,C2,R 124 | 123,TCCATTAT,pbs_1368,C3,R 125 | 124,AGGATTAA,pbs_1175,C4,R 126 | 125,AATCTTTC,pbs_1309,C5,R 127 | 126,GTCATATG,pbs_1160,C6,R 128 | 127,GTGCTTCC,pbs_1351,C7,R 129 | 128,ATGTGTTG,pbs_1319,C8,R 130 | 129,CCATCTTG,pbs_1169,C9,R 131 | 130,TACTGTCT,pbs_1357,C10,R 132 | 131,TTCATCGC,pbs_1173,C11,R 133 | 132,ACTGTGGG,pbs_1311,C12,R 134 | 133,TCTGTGCC,pbs_1373,D1,R 135 | 134,TCAATCTC,pbs_1364,D2,R 136 | 135,GTCCTCTG,pbs_1349,D3,R 137 | 136,TTACATTC,pbs_1386,D4,R 138 | 137,ATTCTGTC,pbs_1322,D5,R 139 | 138,TGTGTATG,pbs_1383,D6,R 140 | 139,TCCATTTG,pbs_1369,D7,R 141 | 140,TTAGCTTC,pbs_1387,D8,R 142 | 141,GTGCTTGA,pbs_1352,D9,R 143 | 142,GTTTGTGA,pbs_1179,D10,R 144 | 143,GAAATTAG,pbs_1174,D11,R 145 | 144,GCAAATTC,pbs_1182,D12,R 146 | 145,GAGGTTGA,pbs_1171,E1,R 147 | 146,CCTGTCTG,pbs_1334,E2,R 148 | 147,GTGGGTTC,pbs_1185,E3,R 149 | 148,TTTGCATC,pbs_1394,E4,R 150 | 149,AGGTAATA,pbs_1189,E5,R 151 | 150,GTGCCTTC,pbs_1350,E6,R 152 | 151,ATGTTTCC,pbs_1320,E7,R 153 | 152,CTTAATTC,pbs_1338,E8,R 154 | 153,TCTGGCTC,pbs_1372,E9,R 155 | 154,CATCATTT,pbs_1328,E10,R 156 | 155,GTTGTCTC,pbs_1397,E11,R 157 | 156,ATCTTCTG,pbs_1316,E12,R 158 | 157,TGTTTGCC,pbs_1385,F1,R 159 | 158,TTCTGTCA,pbs_1389,F2,R 160 | 159,ACGGACTC,pbs_1152,F3,R 161 | 160,TTTGGTCA,pbs_1395,F4,R 162 | 161,TATCCGGG,pbs_1188,F5,R 163 | 162,TGTCATTC,pbs_1381,F6,R 164 | 163,ATTCTCTG,pbs_1321,F7,R 165 | 164,TGGCTTCC,pbs_1379,F8,R 166 | 165,TTGTTGCC,pbs_1393,F9,R 167 | 166,GTCATCTC,pbs_1347,F10,R 168 | 167,TTGCTCAT,pbs_1391,F11,R 169 | 168,CTGTCTGC,pbs_1302,F12,R 170 | 169,TATATTCC,pbs_1360,G1,R 171 | 170,ATATTGGC,pbs_1161,G2,R 172 | 171,GTGTCCTC,pbs_1353,G3,R 173 | 172,ATCTTCAT,pbs_1315,G4,R 174 | 173,CGTGGTTG,pbs_1190,G5,R 175 | 174,TTGCATCC,pbs_1390,G6,R 176 | 175,TCTTAATC,pbs_1177,G7,R 177 | 176,TGCATTTC,pbs_1375,G8,R 178 | 177,GATGTTTC,pbs_1341,G9,R 179 | 178,ATCTTGTC,pbs_1317,G10,R 180 | 179,TCATATTC,pbs_1365,G11,R 181 | 180,TGGCCTCT,pbs_1378,G12,R 182 | 181,CGTTGTCT,pbs_1335,H1,R 183 | 182,TCTTGTCA,pbs_1374,H2,R 184 | 183,TATTCCTG,pbs_1363,H3,R 185 | 184,TCCATGTC,pbs_1306,H4,R 186 | 185,TTGTCATC,pbs_1392,H5,R 187 | 186,ATTTCCTG,pbs_1323,H6,R 188 | 187,GTGTCTCC,pbs_1354,H7,R 189 | 188,GTGTGTGT,pbs_1355,H8,R 190 | 189,TATGCTTC,pbs_1361,H9,R 191 | 190,ATGGTGTT,pbs_1318,H10,R 192 | 191,GAATAATG,pbs_1164,H11,R 193 | 192,CCTCTGTG,pbs_1332,H12,R 194 | -------------------------------------------------------------------------------- /barcodes/bc_data_n208_R1_v3_3.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,stype 2 | 1,CATTCCTA,pbs_1239,A1,T 3 | 2,CTTCATCA,pbs_1205,A2,T 4 | 3,CGTATATC,pbs_1410,A3,T 5 | 4,ACATTTAC,pbs_1211,A4,T 6 | 5,ACTTAGCT,pbs_1218,A5,T 7 | 6,GCAATTCT,pbs_1412,A6,T 8 | 7,GCCTATCT,pbs_1273,A7,T 9 | 8,ATGCTGCT,pbs_1227,A8,T 10 | 9,CATTTACA,pbs_1242,A9,T 11 | 10,ACTCGTAA,pbs_1100,A10,T 12 | 11,TCTTAGCA,pbs_1419,A11,T 13 | 12,ATGCACTT,pbs_1407,A12,T 14 | 13,ATTTGGCA,pbs_1231,B1,T 15 | 14,TTATTCTG,pbs_1118,B2,T 16 | 15,TCATGCTC,pbs_1285,B3,T 17 | 16,CATACTTC,pbs_1202,B4,T 18 | 17,TCGTTCTA,pbs_1416,B5,T 19 | 18,GCTTCATA,pbs_1279,B6,T 20 | 19,CTCTGTGC,pbs_1204,B7,T 21 | 20,TCCTTATA,pbs_1415,B8,T 22 | 21,ACTGCTCT,pbs_1200,B9,T 23 | 22,CTCTAATC,pbs_1257,B10,T 24 | 23,ACGCTTGC,pbs_1404,B11,T 25 | 24,ATCTTAGG,pbs_1224,B12,T 26 | 25,CATGTCTC,pbs_1238,C1,T 27 | 26,TCATTGCA,pbs_1288,C2,T 28 | 27,ACACCTTT,pbs_1209,C3,T 29 | 28,AATTTCTC,pbs_1115,C4,T 30 | 29,ATTCATGG,pbs_1108,C5,T 31 | 30,ACTTTACC,pbs_1220,C6,T 32 | 31,CTTCTAAC,pbs_1267,C7,T 33 | 32,CTATTTCA,pbs_1145,C8,T 34 | 33,TCTCATGC,pbs_1292,C9,T 35 | 34,ATCCTTAC,pbs_1223,C10,T 36 | 35,TAAATATC,pbs_1125,C11,T 37 | 36,TTACCTGC,pbs_1295,C12,T 38 | 37,CACTTTCA,pbs_1236,D1,T 39 | 38,CACCTTTA,pbs_1233,D2,T 40 | 39,CTGACTTC,pbs_1261,D3,T 41 | 40,CATTTGGA,pbs_1141,D4,T 42 | 41,GCTCTACT,pbs_1277,D5,T 43 | 42,GTTACGTA,pbs_1144,D6,T 44 | 43,CATATTGC,pbs_1408,D7,T 45 | 44,CTATCATC,pbs_1203,D8,T 46 | 45,GCTATCAT,pbs_1276,D9,T 47 | 46,ACATTCAT,pbs_1210,D10,T 48 | 47,TTCGCTAC,pbs_1132,D11,T 49 | 48,CATTCTAC,pbs_1240,D12,T 50 | 49,CACTTATC,pbs_1234,E1,T 51 | 50,ATAAGCTC,pbs_1107,E2,T 52 | 51,TCATCCTG,pbs_1284,E3,T 53 | 52,CATGGTAT,pbs_1409,E4,T 54 | 53,TGGTATAC,pbs_1104,E5,T 55 | 54,TTGGGAGA,pbs_1123,E6,T 56 | 55,ACTTCATC,pbs_1201,E7,T 57 | 56,TCTCTAGC,pbs_1293,E8,T 58 | 57,ACTCCTGC,pbs_1215,E9,T 59 | 58,TCCAATTT,pbs_1414,E10,T 60 | 59,ACTATATA,pbs_1146,E11,T 61 | 60,CTCTATAC,pbs_1258,E12,T 62 | 61,CTGTCTCA,pbs_1263,F1,T 63 | 62,GACCTTTC,pbs_1138,F2,T 64 | 63,GATTTGGC,pbs_1271,F3,T 65 | 64,TAATTAGC,pbs_1600,F4,T 66 | 65,TACTCGAA,pbs_1140,F5,T 67 | 66,CAGCCTTT,pbs_1237,F6,T 68 | 67,AGTCATTA,pbs_1406,F7,T 69 | 68,CTTATACC,pbs_1264,F8,T 70 | 69,TCTATTAC,pbs_1106,F9,T 71 | 70,CTTGCATT,pbs_1411,F10,T 72 | 71,CAATCCTT,pbs_1232,F11,T 73 | 72,TTGTCTTA,pbs_1121,F12,T 74 | 73,TCACTTTA,pbs_1147,G1,T 75 | 74,TGCTTGGG,pbs_1124,G2,T 76 | 75,CGCTCATT,pbs_1256,G3,T 77 | 76,GCCTCTAT,pbs_1274,G4,T 78 | 77,GAGCACAA,pbs_1142,G5,T 79 | 78,CTCTTAAC,pbs_1260,G6,T 80 | 79,TCTAGGCT,pbs_1291,G7,T 81 | 80,AATTCTGC,pbs_1396,G8,T 82 | 81,CATTCTCA,pbs_1241,G9,T 83 | 82,ACTTGCCT,pbs_1219,G10,T 84 | 83,ATCATTGC,pbs_1222,G11,T 85 | 84,GTTCAACA,pbs_1119,G12,T 86 | 85,TGATTGTC,pbs_1420,H1,T 87 | 86,GACTTTGC,pbs_1269,H2,T 88 | 87,ATTGGCTC,pbs_1081,H3,T 89 | 88,GTGCTAGC,pbs_1127,H4,T 90 | 89,CTTTCAAC,pbs_1268,H5,T 91 | 90,ACTATTGC,pbs_1214,H6,T 92 | 91,ACTGGCTT,pbs_1216,H7,T 93 | 92,ATTAGGCT,pbs_1228,H8,T 94 | 93,GCCTTTCA,pbs_1275,H9,T 95 | 94,ATTCTAGG,pbs_1229,H10,T 96 | 95,TCTTACAT,pbs_1418,H11,T 97 | 96,ACATTTGG,pbs_1212,H12,T 98 | 97,CATCATCC,pbs_1327,A1,R 99 | 98,CTGCTTTG,pbs_1148,A2,R 100 | 99,TGAGTTCG,pbs_1601,A3,R 101 | 100,GCTTATAG,pbs_1166,A4,R 102 | 101,TCTGATCC,pbs_1371,A5,R 103 | 102,TCTCTTGG,pbs_1370,A6,R 104 | 103,CAATTTCC,pbs_1326,A7,R 105 | 104,AGTCTCTT,pbs_1312,A8,R 106 | 105,TGCTGCTC,pbs_1377,A9,R 107 | 106,GTATTTCC,pbs_1346,A10,R 108 | 107,TTCCTGTG,pbs_1388,A11,R 109 | 108,TCTGGCTC,pbs_1372,A12,R 110 | 109,TATGTGTC,pbs_1362,B1,R 111 | 110,CAATTCTC,pbs_1301,B2,R 112 | 111,TGGTCTCC,pbs_1380,B3,R 113 | 112,GCTCTTTA,pbs_1344,B4,R 114 | 113,GCTGCATG,pbs_1159,B5,R 115 | 114,ACTCATTT,pbs_1310,B6,R 116 | 115,AGTCTTGG,pbs_1313,B7,R 117 | 116,GGTTCTTC,pbs_1181,B8,R 118 | 117,TCATGTTG,pbs_1367,B9,R 119 | 118,ATTTTGCC,pbs_1324,B10,R 120 | 119,CTTCTGTA,pbs_1339,B11,R 121 | 120,GTCCATCT,pbs_1348,B12,R 122 | 121,GCTATCTC,pbs_1304,C1,R 123 | 122,TAGTTTCC,pbs_1359,C2,R 124 | 123,TCCATTAT,pbs_1368,C3,R 125 | 124,AGGATTAA,pbs_1175,C4,R 126 | 125,AATCTTTC,pbs_1309,C5,R 127 | 126,GTCATATG,pbs_1160,C6,R 128 | 127,GTGCTTCC,pbs_1351,C7,R 129 | 128,ATGTGTTG,pbs_1319,C8,R 130 | 129,GCATCTTG,pbs_1413,C9,R 131 | 130,TACTGTCT,pbs_1357,C10,R 132 | 131,TTCATCGC,pbs_1173,C11,R 133 | 132,ACTGTGGG,pbs_1311,C12,R 134 | 133,TCTGTGCC,pbs_1373,D1,R 135 | 134,TCAATCTC,pbs_1364,D2,R 136 | 135,GTCCTCTG,pbs_1349,D3,R 137 | 136,TTACATTC,pbs_1386,D4,R 138 | 137,ATTCTGTC,pbs_1322,D5,R 139 | 138,TGTGTATG,pbs_1383,D6,R 140 | 139,TCCATTTG,pbs_1369,D7,R 141 | 140,TTAGCTTC,pbs_1387,D8,R 142 | 141,GTGCTTGA,pbs_1352,D9,R 143 | 142,GTTTGTGA,pbs_1179,D10,R 144 | 143,GAAATTAG,pbs_1174,D11,R 145 | 144,GCAAATTC,pbs_1182,D12,R 146 | 145,TTACCGCC,pbs_1602,E1,R 147 | 146,TCTGTCTG,pbs_1417,E2,R 148 | 147,GTGGGTTC,pbs_1185,E3,R 149 | 148,TTTGCATC,pbs_1394,E4,R 150 | 149,CATTTGCT,pbs_1603,E5,R 151 | 150,GTGCCTTC,pbs_1350,E6,R 152 | 151,ATGTTTCC,pbs_1320,E7,R 153 | 152,CTTAATTC,pbs_1338,E8,R 154 | 153,GTGTGTGT,pbs_1355,E9,R 155 | 154,CATCATTT,pbs_1328,E10,R 156 | 155,GTTGTCTC,pbs_1397,E11,R 157 | 156,ATCTTCTG,pbs_1316,E12,R 158 | 157,TGTTTGCC,pbs_1385,F1,R 159 | 158,TTCTGTCA,pbs_1389,F2,R 160 | 159,ACGGACTC,pbs_1152,F3,R 161 | 160,TTTGGTCA,pbs_1395,F4,R 162 | 161,TATCCGGG,pbs_1188,F5,R 163 | 162,TGTCATTC,pbs_1381,F6,R 164 | 163,CTGTCTGC,pbs_1302,F7,R 165 | 164,TGGCTTCC,pbs_1379,F8,R 166 | 165,TTGTTGCC,pbs_1393,F9,R 167 | 166,GTCATCTC,pbs_1347,F10,R 168 | 167,TTGCTCAT,pbs_1391,F11,R 169 | 168,ATTCTCTG,pbs_1321,F12,R 170 | 169,TATATTCC,pbs_1360,G1,R 171 | 170,ATATTGGC,pbs_1161,G2,R 172 | 171,GTGTCCTC,pbs_1353,G3,R 173 | 172,ATCTTCAT,pbs_1315,G4,R 174 | 173,CGTGGTTG,pbs_1190,G5,R 175 | 174,TTGCATCC,pbs_1390,G6,R 176 | 175,TCTTAATC,pbs_1177,G7,R 177 | 176,TGCATTTC,pbs_1375,G8,R 178 | 177,GATGTTTC,pbs_1341,G9,R 179 | 178,ATCTTGTC,pbs_1317,G10,R 180 | 179,TCATATTC,pbs_1365,G11,R 181 | 180,TGGCCTCT,pbs_1378,G12,R 182 | 181,CGTTGTCT,pbs_1335,H1,R 183 | 182,TCTTGTCA,pbs_1374,H2,R 184 | 183,TATTCCTG,pbs_1363,H3,R 185 | 184,TCCATGTC,pbs_1306,H4,R 186 | 185,TTGTCATC,pbs_1392,H5,R 187 | 186,ATTTCCTG,pbs_1323,H6,R 188 | 187,GTGTCTCC,pbs_1354,H7,R 189 | 188,GCTGCTTC,pbs_1345,H8,R 190 | 189,TATGCTTC,pbs_1361,H9,R 191 | 190,TTTACTCT,pbs_1604,H10,R 192 | 191,GAATAATG,pbs_1164,H11,R 193 | 192,ACTCTGTG,pbs_1405,H12,R 194 | 193,GTCTCTGC,pbs_tcrX1,D8,X 195 | 194,GTCTGCTC,pbs_tcrX2,D9,X 196 | 195,TCATTCGC,pbs_tcrX3,D11,X 197 | 196,GTCCTTCA,pbs_tcrX4,H3,X 198 | 197,TCATGTGC,pbs_tcrX5,H7,X 199 | 198,TCACTTGC,pbs_tcrX6,H11,X 200 | 199,CCTTTAAC,pbs_tcrX7,A11,X 201 | 200,CCGATGTT,pbs_tcrX8,A4,X 202 | 201,TATTTAAG,pbs_tcrX9,B7,X 203 | 202,CAATCTTC,pbs_tcrX10,E5,X 204 | 203,CACTTTAC,pbs_tcrX11,E6,X 205 | 204,CGTCTAGG,pbs_tcrX12,F4,X 206 | 205,TATAGTCG,pbs_tcrX13,G11,X 207 | 206,CCATATTT,pbs_tcrX14,G2,X 208 | 207,CTCATTAC,pbs_tcrX15,H4,X 209 | 208,GTCCGTAG,pbs_tcrX16,H6,X 210 | -------------------------------------------------------------------------------- /barcodes/bc_data_n24_v4.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,type 2 | 1,CATTCCTA,pbs_1239,A1,T 3 | 2,CTTCATCA,pbs_1205,A2,T 4 | 3,CCTATATC,pbs_1247,A3,T 5 | 4,ACATTTAC,pbs_1211,A4,T 6 | 5,ACTTAGCT,pbs_1218,A5,T 7 | 6,CCAATTCT,pbs_1243,A6,T 8 | 7,GCCTATCT,pbs_1273,A7,T 9 | 8,ATGCTGCT,pbs_1227,A8,T 10 | 9,CATTTACA,pbs_1242,A9,T 11 | 10,ACTCGTAA,pbs_1100,A10,T 12 | 11,CCTTTGCA,pbs_1255,A11,T 13 | 12,ACTCCTGC,pbs_1215,A12,T 14 | 13,CATCATCC,pbs_1327,A1,R 15 | 14,CTGCTTTG,pbs_1148,A2,R 16 | 15,CTAAGGGA,pbs_1162,A3,R 17 | 16,GCTTATAG,pbs_1166,A4,R 18 | 17,TCTGATCC,pbs_1371,A5,R 19 | 18,TCTCTTGG,pbs_1370,A6,R 20 | 19,CAATTTCC,pbs_1326,A7,R 21 | 20,AGTCTCTT,pbs_1312,A8,R 22 | 21,TGCTGCTC,pbs_1377,A9,R 23 | 22,GTATTTCC,pbs_1346,A10,R 24 | 23,TTCCTGTG,pbs_1388,A11,R 25 | 24,GCTGCTTC,pbs_1345,A12,R 26 | -------------------------------------------------------------------------------- /barcodes/bc_data_n26_R1_v3_3.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,stype 2 | 1,CATTCCTA,pbs_1239,A1,T 3 | 2,CTTCATCA,pbs_1205,A2,T 4 | 3,CGTATATC,pbs_1410,A3,T 5 | 4,ACATTTAC,pbs_1211,A4,T 6 | 5,ACTTAGCT,pbs_1218,A5,T 7 | 6,GCAATTCT,pbs_1412,A6,T 8 | 7,GCCTATCT,pbs_1273,A7,T 9 | 8,ATGCTGCT,pbs_1227,A8,T 10 | 9,CATTTACA,pbs_1242,A9,T 11 | 10,ACTCGTAA,pbs_1100,A10,T 12 | 11,TCTTAGCA,pbs_1419,A11,T 13 | 12,ATGCACTT,pbs_1407,A12,T 14 | 97,CATCATCC,pbs_1327,A1,R 15 | 98,CTGCTTTG,pbs_1148,A2,R 16 | 99,TGAGTTCG,pbs_1601,A3,R 17 | 100,GCTTATAG,pbs_1166,A4,R 18 | 101,TCTGATCC,pbs_1371,A5,R 19 | 102,TCTCTTGG,pbs_1370,A6,R 20 | 103,CAATTTCC,pbs_1326,A7,R 21 | 104,AGTCTCTT,pbs_1312,A8,R 22 | 105,TGCTGCTC,pbs_1377,A9,R 23 | 106,GTATTTCC,pbs_1346,A10,R 24 | 107,TTCCTGTG,pbs_1388,A11,R 25 | 108,TCTGGCTC,pbs_1372,A12,R 26 | 199,CCTTTAAC,pbs_tcrX7,A11,X 27 | 200,CCGATGTT,pbs_tcrX8,A4,X 28 | -------------------------------------------------------------------------------- /barcodes/bc_data_n96_v4.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,type 2 | 1,CATTCCTA,pbs_1239,A1,T 3 | 2,CTTCATCA,pbs_1205,A2,T 4 | 3,CCTATATC,pbs_1247,A3,T 5 | 4,ACATTTAC,pbs_1211,A4,T 6 | 5,ACTTAGCT,pbs_1218,A5,T 7 | 6,CCAATTCT,pbs_1243,A6,T 8 | 7,GCCTATCT,pbs_1273,A7,T 9 | 8,ATGCTGCT,pbs_1227,A8,T 10 | 9,CATTTACA,pbs_1242,A9,T 11 | 10,ACTCGTAA,pbs_1100,A10,T 12 | 11,CCTTTGCA,pbs_1255,A11,T 13 | 12,ACTCCTGC,pbs_1215,A12,T 14 | 13,ATTTGGCA,pbs_1231,B1,T 15 | 14,TTATTCTG,pbs_1118,B2,T 16 | 15,TCATGCTC,pbs_1285,B3,T 17 | 16,CATACTTC,pbs_1202,B4,T 18 | 17,CCGTTCTA,pbs_1111,B5,T 19 | 18,GCTTCATA,pbs_1279,B6,T 20 | 19,CTCTGTGC,pbs_1204,B7,T 21 | 20,CCCTTATA,pbs_1246,B8,T 22 | 21,ACTGCTCT,pbs_1200,B9,T 23 | 22,CTCTAATC,pbs_1257,B10,T 24 | 23,ACCCTTGC,pbs_1213,B11,T 25 | 24,ATCTTAGG,pbs_1224,B12,T 26 | 25,CATGTCTC,pbs_1238,C1,T 27 | 26,TCATTGCA,pbs_1288,C2,T 28 | 27,ACACCTTT,pbs_1209,C3,T 29 | 28,AATTTCTC,pbs_1115,C4,T 30 | 29,ATTCATGG,pbs_1108,C5,T 31 | 30,ACTTTACC,pbs_1220,C6,T 32 | 31,CTTCTAAC,pbs_1267,C7,T 33 | 32,CTATTTCA,pbs_1145,C8,T 34 | 33,TCTCATGC,pbs_1292,C9,T 35 | 34,ATCCTTAC,pbs_1223,C10,T 36 | 35,TAAATATC,pbs_1125,C11,T 37 | 36,TTACCTGC,pbs_1295,C12,T 38 | 37,CACTTTCA,pbs_1236,D1,T 39 | 38,CACCTTTA,pbs_1233,D2,T 40 | 39,CTGACTTC,pbs_1261,D3,T 41 | 40,CATTTGGA,pbs_1141,D4,T 42 | 41,GCTCTACT,pbs_1277,D5,T 43 | 42,GTTACGTA,pbs_1144,D6,T 44 | 43,CCTGTTGC,pbs_1251,D7,T 45 | 44,CTATCATC,pbs_1203,D8,T 46 | 45,GCTATCAT,pbs_1276,D9,T 47 | 46,ACATTCAT,pbs_1210,D10,T 48 | 47,TTCGCTAC,pbs_1132,D11,T 49 | 48,CATTCTAC,pbs_1240,D12,T 50 | 49,CATCATCC,pbs_1327,A1,R 51 | 50,CTGCTTTG,pbs_1148,A2,R 52 | 51,CTAAGGGA,pbs_1162,A3,R 53 | 52,GCTTATAG,pbs_1166,A4,R 54 | 53,TCTGATCC,pbs_1371,A5,R 55 | 54,TCTCTTGG,pbs_1370,A6,R 56 | 55,CAATTTCC,pbs_1326,A7,R 57 | 56,AGTCTCTT,pbs_1312,A8,R 58 | 57,TGCTGCTC,pbs_1377,A9,R 59 | 58,GTATTTCC,pbs_1346,A10,R 60 | 59,TTCCTGTG,pbs_1388,A11,R 61 | 60,GCTGCTTC,pbs_1345,A12,R 62 | 61,TATGTGTC,pbs_1362,B1,R 63 | 62,CAATTCTC,pbs_1301,B2,R 64 | 63,TGGTCTCC,pbs_1380,B3,R 65 | 64,GCTCTTTA,pbs_1344,B4,R 66 | 65,GCTGCATG,pbs_1159,B5,R 67 | 66,ACTCATTT,pbs_1310,B6,R 68 | 67,AGTCTTGG,pbs_1313,B7,R 69 | 68,GGTTCTTC,pbs_1181,B8,R 70 | 69,TCATGTTG,pbs_1367,B9,R 71 | 70,ATTTTGCC,pbs_1324,B10,R 72 | 71,CTTCTGTA,pbs_1339,B11,R 73 | 72,GTCCATCT,pbs_1348,B12,R 74 | 73,GCTATCTC,pbs_1304,C1,R 75 | 74,TAGTTTCC,pbs_1359,C2,R 76 | 75,TCCATTAT,pbs_1368,C3,R 77 | 76,AGGATTAA,pbs_1175,C4,R 78 | 77,AATCTTTC,pbs_1309,C5,R 79 | 78,GTCATATG,pbs_1160,C6,R 80 | 79,GTGCTTCC,pbs_1351,C7,R 81 | 80,ATGTGTTG,pbs_1319,C8,R 82 | 81,CCATCTTG,pbs_1169,C9,R 83 | 82,TACTGTCT,pbs_1357,C10,R 84 | 83,TTCATCGC,pbs_1173,C11,R 85 | 84,ACTGTGGG,pbs_1311,C12,R 86 | 85,TCTGTGCC,pbs_1373,D1,R 87 | 86,TCAATCTC,pbs_1364,D2,R 88 | 87,GTCCTCTG,pbs_1349,D3,R 89 | 88,TTACATTC,pbs_1386,D4,R 90 | 89,ATTCTGTC,pbs_1322,D5,R 91 | 90,TGTGTATG,pbs_1383,D6,R 92 | 91,TCCATTTG,pbs_1369,D7,R 93 | 92,TTAGCTTC,pbs_1387,D8,R 94 | 93,GTGCTTGA,pbs_1352,D9,R 95 | 94,GTTTGTGA,pbs_1179,D10,R 96 | 95,GAAATTAG,pbs_1174,D11,R 97 | 96,GCAAATTC,pbs_1182,D12,R 98 | -------------------------------------------------------------------------------- /barcodes/bc_data_v1.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,type 2 | 1,AACGTGAT,pbs_1000,A1,L 3 | 2,AAACATCG,pbs_1001,A2,L 4 | 3,ATGCCTAA,pbs_1002,A3,L 5 | 4,AGTGGTCA,pbs_1003,A4,L 6 | 5,ACCACTGT,pbs_1004,A5,L 7 | 6,ACATTGGC,pbs_1005,A6,L 8 | 7,CAGATCTG,pbs_1006,A7,L 9 | 8,CATCAAGT,pbs_1007,A8,L 10 | 9,CGCTGATC,pbs_1008,A9,L 11 | 10,ACAAGCTA,pbs_1009,A10,L 12 | 11,CTGTAGCC,pbs_1010,A11,L 13 | 12,AGTACAAG,pbs_1011,A12,L 14 | 13,AACAACCA,pbs_1012,B1,L 15 | 14,AACCGAGA,pbs_1013,B2,L 16 | 15,AACGCTTA,pbs_1014,B3,L 17 | 16,AAGACGGA,pbs_1015,B4,L 18 | 17,AAGGTACA,pbs_1016,B5,L 19 | 18,ACACAGAA,pbs_1017,B6,L 20 | 19,ACAGCAGA,pbs_1018,B7,L 21 | 20,ACCTCCAA,pbs_1019,B8,L 22 | 21,ACGCTCGA,pbs_1020,B9,L 23 | 22,ACGTATCA,pbs_1021,B10,L 24 | 23,ACTATGCA,pbs_1022,B11,L 25 | 24,AGAGTCAA,pbs_1023,B12,L 26 | 25,AGATCGCA,pbs_1024,C1,L 27 | 26,AGCAGGAA,pbs_1025,C2,L 28 | 27,AGTCACTA,pbs_1026,C3,L 29 | 28,ATCCTGTA,pbs_1027,C4,L 30 | 29,ATTGAGGA,pbs_1028,C5,L 31 | 30,CAACCACA,pbs_1029,C6,L 32 | 31,GACTAGTA,pbs_1030,C7,L 33 | 32,CAATGGAA,pbs_1031,C8,L 34 | 33,CACTTCGA,pbs_1032,C9,L 35 | 34,CAGCGTTA,pbs_1033,C10,L 36 | 35,CATACCAA,pbs_1034,C11,L 37 | 36,CCAGTTCA,pbs_1035,C12,L 38 | 37,CCGAAGTA,pbs_1036,D1,L 39 | 38,CCGTGAGA,pbs_1037,D2,L 40 | 39,CCTCCTGA,pbs_1038,D3,L 41 | 40,CGAACTTA,pbs_1039,D4,L 42 | 41,CGACTGGA,pbs_1040,D5,L 43 | 42,CGCATACA,pbs_1041,D6,L 44 | 43,CTCAATGA,pbs_1042,D7,L 45 | 44,CTGAGCCA,pbs_1043,D8,L 46 | 45,CTGGCATA,pbs_1044,D9,L 47 | 46,GAATCTGA,pbs_1045,D10,L 48 | 47,CAAGACTA,pbs_1046,D11,L 49 | 48,GAGCTGAA,pbs_1047,D12,L 50 | 49,GATAGACA,pbs_1048,E1,L 51 | 50,GCCACATA,pbs_1049,E2,L 52 | 51,GCGAGTAA,pbs_1050,E3,L 53 | 52,GCTAACGA,pbs_1051,E4,L 54 | 53,GCTCGGTA,pbs_1052,E5,L 55 | 54,GGAGAACA,pbs_1053,E6,L 56 | 55,GGTGCGAA,pbs_1054,E7,L 57 | 56,GTACGCAA,pbs_1055,E8,L 58 | 57,GTCGTAGA,pbs_1056,E9,L 59 | 58,GTCTGTCA,pbs_1057,E10,L 60 | 59,GTGTTCTA,pbs_1058,E11,L 61 | 60,TAGGATGA,pbs_1059,E12,L 62 | 61,TATCAGCA,pbs_1060,F1,L 63 | 62,TCCGTCTA,pbs_1061,F2,L 64 | 63,TCTTCACA,pbs_1062,F3,L 65 | 64,TGAAGAGA,pbs_1063,F4,L 66 | 65,TGGAACAA,pbs_1064,F5,L 67 | 66,TGGCTTCA,pbs_1065,F6,L 68 | 67,TGGTGGTA,pbs_1066,F7,L 69 | 68,TTCACGCA,pbs_1067,F8,L 70 | 69,AACTCACC,pbs_1068,F9,L 71 | 70,AAGAGATC,pbs_1069,F10,L 72 | 71,AAGGACAC,pbs_1070,F11,L 73 | 72,AATCCGTC,pbs_1071,F12,L 74 | 73,AATGTTGC,pbs_1072,G1,L 75 | 74,ACACGACC,pbs_1073,G2,L 76 | 75,ACAGATTC,pbs_1074,G3,L 77 | 76,AGATGTAC,pbs_1075,G4,L 78 | 77,AGCACCTC,pbs_1076,G5,L 79 | 78,AGCCATGC,pbs_1077,G6,L 80 | 79,AGGCTAAC,pbs_1078,G7,L 81 | 80,ATAGCGAC,pbs_1079,G8,L 82 | 81,ATCATTCC,pbs_1080,G9,L 83 | 82,ATTGGCTC,pbs_1081,G10,L 84 | 83,CAAGGAGC,pbs_1082,G11,L 85 | 84,CACCTTAC,pbs_1083,G12,L 86 | 85,CCATCCTC,pbs_1084,H1,L 87 | 86,CCGACAAC,pbs_1085,H2,L 88 | 87,CCTAATCC,pbs_1086,H3,L 89 | 88,CCTCTATC,pbs_1087,H4,L 90 | 89,CGACACAC,pbs_1088,H5,L 91 | 90,CGGATTGC,pbs_1089,H6,L 92 | 91,CTAAGGTC,pbs_1090,H7,L 93 | 92,GAACAGGC,pbs_1091,H8,L 94 | 93,GACAGTGC,pbs_1092,H9,L 95 | 94,GAGTTAGC,pbs_1093,H10,L 96 | 95,GATGAATC,pbs_1094,H11,L 97 | 96,GCCAAGAC,pbs_1095,H12,L 98 | -------------------------------------------------------------------------------- /barcodes/bc_data_v2.csv: -------------------------------------------------------------------------------- 1 | bci,sequence,uid,well,type 2 | 1,ACTCGTAA,pbs_1100,A1,T 3 | 2,AAACGATA,pbs_1101,A2,T 4 | 3,TTACCTCG,pbs_1102,A3,T 5 | 4,GCCTGCAA,pbs_1103,A4,T 6 | 5,TGGTATAC,pbs_1104,A5,T 7 | 6,CGTTCGAG,pbs_1105,A6,T 8 | 7,TCTATTAC,pbs_1106,A7,T 9 | 8,ATAAGCTC,pbs_1107,A8,T 10 | 9,ATTCATGG,pbs_1108,A9,T 11 | 10,ATCCGCGA,pbs_1109,A10,T 12 | 11,ATCGCATA,pbs_1110,A11,T 13 | 12,CCGTTCTA,pbs_1111,A12,T 14 | 13,TGGCGCGC,pbs_1112,B1,T 15 | 14,TGTCTGAA,pbs_1113,B2,T 16 | 15,CTGTCCCG,pbs_1114,B3,T 17 | 16,AATTTCTC,pbs_1115,B4,T 18 | 17,CGCGACTA,pbs_1116,B5,T 19 | 18,TGAAGCAA,pbs_1117,B6,T 20 | 19,TTATTCTG,pbs_1118,B7,T 21 | 20,GTTCAACA,pbs_1119,B8,T 22 | 21,ACGCCGGC,pbs_1120,B9,T 23 | 22,TTGTCTTA,pbs_1121,B10,T 24 | 23,TACGGTTA,pbs_1122,B11,T 25 | 24,TTGGGAGA,pbs_1123,B12,T 26 | 25,TGCTTGGG,pbs_1124,C1,T 27 | 26,TAAATATC,pbs_1125,C2,T 28 | 27,CACAATTG,pbs_1126,C3,T 29 | 28,GTGCTAGC,pbs_1127,C4,T 30 | 29,CGCCCGGA,pbs_1128,C5,T 31 | 30,GCTCGCGG,pbs_1129,C6,T 32 | 31,CTTTGGTC,pbs_1130,C7,T 33 | 32,TTCCGATC,pbs_1131,C8,T 34 | 33,TTCGCTAC,pbs_1132,C9,T 35 | 34,AGCGAAAC,pbs_1133,C10,T 36 | 35,AAATAGCA,pbs_1134,C11,T 37 | 36,CGTCTAGG,pbs_1135,C12,T 38 | 37,GCCGTGTA,pbs_1136,D1,T 39 | 38,CGCTTAAA,pbs_1137,D2,T 40 | 39,GACCTTTC,pbs_1138,D3,T 41 | 40,GGTGGAGC,pbs_1139,D4,T 42 | 41,TACTCGAA,pbs_1140,D5,T 43 | 42,CATTTGGA,pbs_1141,D6,T 44 | 43,GAGCACAA,pbs_1142,D7,T 45 | 44,GTCGCGCG,pbs_1143,D8,T 46 | 45,GTTACGTA,pbs_1144,D9,T 47 | 46,CTATTTCA,pbs_1145,D10,T 48 | 47,ACTATATA,pbs_1146,D11,T 49 | 48,TCACTTTA,pbs_1147,D12,T 50 | 49,CTGCTTTG,pbs_1148,A1,R 51 | 50,CATGATCA,pbs_1149,A2,R 52 | 51,GGGTAGCG,pbs_1150,A3,R 53 | 52,CCGAGAAA,pbs_1151,A4,R 54 | 53,ACGGACTC,pbs_1152,A5,R 55 | 54,ACTTACGA,pbs_1153,A6,R 56 | 55,TATTTAAG,pbs_1154,A7,R 57 | 56,ACCGTACG,pbs_1155,A8,R 58 | 57,TATAGTCG,pbs_1156,A9,R 59 | 58,TGGGCATC,pbs_1157,A10,R 60 | 59,TACCTAGA,pbs_1158,A11,R 61 | 60,GCTGCATG,pbs_1159,A12,R 62 | 61,GTCATATG,pbs_1160,B1,R 63 | 62,ATATTGGC,pbs_1161,B2,R 64 | 63,CTAAGGGA,pbs_1162,B3,R 65 | 64,TCGTTTCG,pbs_1163,B4,R 66 | 65,GAATAATG,pbs_1164,B5,R 67 | 66,ACTGCGCA,pbs_1165,B6,R 68 | 67,GCTTATAG,pbs_1166,B7,R 69 | 68,ATCATGCA,pbs_1167,B8,R 70 | 69,ACGTTAAC,pbs_1168,B9,R 71 | 70,CCATCTTG,pbs_1169,B10,R 72 | 71,CATAGCTA,pbs_1170,B11,R 73 | 72,GAGGTTGA,pbs_1171,B12,R 74 | 73,GCACTGAC,pbs_1172,C1,R 75 | 74,TTCATCGC,pbs_1173,C2,R 76 | 75,GAAATTAG,pbs_1174,C3,R 77 | 76,AGGATTAA,pbs_1175,C4,R 78 | 77,AATAGAAC,pbs_1176,C5,R 79 | 78,TCTTAATC,pbs_1177,C6,R 80 | 79,TAATACGC,pbs_1178,C7,R 81 | 80,GTTTGTGA,pbs_1179,C8,R 82 | 81,CGAACGTC,pbs_1180,C9,R 83 | 82,GGTTCTTC,pbs_1181,C10,R 84 | 83,GCAAATTC,pbs_1182,C11,R 85 | 84,GCTATGCG,pbs_1183,C12,R 86 | 85,CTACCCTA,pbs_1184,D1,R 87 | 86,GTGGGTTC,pbs_1185,D2,R 88 | 87,GTCCGTAG,pbs_1186,D3,R 89 | 88,TGCGATCG,pbs_1187,D4,R 90 | 89,TATCCGGG,pbs_1188,D5,R 91 | 90,AGGTAATA,pbs_1189,D6,R 92 | 91,CGTGGTTG,pbs_1190,D7,R 93 | 92,GACAAAGC,pbs_1191,D8,R 94 | 93,GGGCGATG,pbs_1192,D9,R 95 | 94,ATCTATAA,pbs_1193,D10,R 96 | 95,GCCCATGA,pbs_1194,D11,R 97 | 96,CTGAAAGG,pbs_1195,D12,R 98 | -------------------------------------------------------------------------------- /configs/IGVF_003_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM2747ZOJJ,IGVFSM9909OKAR A1 016_B6J_10F_03 3 | CATTCCTA IGVFSM2747ZOJJ,IGVFSM9909OKAR A1 016_B6J_10F_03 4 | CTGCTTTG IGVFSM5751LMFR,IGVFSM9616JAGA A2 017_B6J_10M_03 5 | CTTCATCA IGVFSM5751LMFR,IGVFSM9616JAGA A2 017_B6J_10M_03 6 | CTAAGGGA IGVFSM4584AIMA,IGVFSM6999WOUL A3 018_B6J_10F_03 7 | CCTATATC IGVFSM4584AIMA,IGVFSM6999WOUL A3 018_B6J_10F_03 8 | GCTTATAG IGVFSM3502KEWR,IGVFSM9565QVTN A4 019_B6J_10M_03 9 | ACATTTAC IGVFSM3502KEWR,IGVFSM9565QVTN A4 019_B6J_10M_03 10 | TCTGATCC IGVFSM6578SAUC,IGVFSM9764WOWB A5 020_B6J_10F_03 11 | ACTTAGCT IGVFSM6578SAUC,IGVFSM9764WOWB A5 020_B6J_10F_03 12 | TCTCTTGG IGVFSM2795QIAK,IGVFSM3360ORUF A6 021_B6J_10M_03 13 | CCAATTCT IGVFSM2795QIAK,IGVFSM3360ORUF A6 021_B6J_10M_03 14 | CAATTTCC IGVFSM0587AFGX,IGVFSM7596ZIPA A7 024_B6J_10F_03 15 | GCCTATCT IGVFSM0587AFGX,IGVFSM7596ZIPA A7 024_B6J_10F_03 16 | AGTCTCTT IGVFSM1457MNSR,IGVFSM4108RLII A8 025_B6J_10M_03 17 | ATGCTGCT IGVFSM1457MNSR,IGVFSM4108RLII A8 025_B6J_10M_03 18 | TGCTGCTC IGVFSM2397OXJE A9 016_B6J_10F_06 19 | CATTTACA IGVFSM2397OXJE A9 016_B6J_10F_06 20 | TGCTGCTC IGVFSM0400KSXT A9 066_NODJ_10F_06 21 | CATTTACA IGVFSM0400KSXT A9 066_NODJ_10F_06 22 | GTATTTCC IGVFSM6821QIOI A10 017_B6J_10M_06 23 | ACTCGTAA IGVFSM6821QIOI A10 017_B6J_10M_06 24 | GTATTTCC IGVFSM8486IRSE A10 067_NODJ_10M_06 25 | ACTCGTAA IGVFSM8486IRSE A10 067_NODJ_10M_06 26 | TTCCTGTG IGVFSM9283STYP A11 018_B6J_10F_06 27 | CCTTTGCA IGVFSM9283STYP A11 018_B6J_10F_06 28 | TTCCTGTG IGVFSM6061AIFT A11 068_NODJ_10F_06 29 | CCTTTGCA IGVFSM6061AIFT A11 068_NODJ_10F_06 30 | GCTGCTTC IGVFSM3819GVRA A12 019_B6J_10M_06 31 | ACTCCTGC IGVFSM3819GVRA A12 019_B6J_10M_06 32 | GCTGCTTC IGVFSM9555SHCP A12 069_NODJ_10M_06 33 | ACTCCTGC IGVFSM9555SHCP A12 069_NODJ_10M_06 34 | TATGTGTC IGVFSM1810KYOB,IGVFSM5439QLWY B1 066_NODJ_10F_03 35 | ATTTGGCA IGVFSM1810KYOB,IGVFSM5439QLWY B1 066_NODJ_10F_03 36 | CAATTCTC IGVFSM3477RPDP,IGVFSM6514BRQT B2 067_NODJ_10M_03 37 | TTATTCTG IGVFSM3477RPDP,IGVFSM6514BRQT B2 067_NODJ_10M_03 38 | TGGTCTCC IGVFSM0483CXTW,IGVFSM2315DNPR B3 068_NODJ_10F_03 39 | TCATGCTC IGVFSM0483CXTW,IGVFSM2315DNPR B3 068_NODJ_10F_03 40 | GCTCTTTA IGVFSM2210CUOC,IGVFSM3655BTER B4 069_NODJ_10M_03 41 | CATACTTC IGVFSM2210CUOC,IGVFSM3655BTER B4 069_NODJ_10M_03 42 | GCTGCATG IGVFSM1916FXAR,IGVFSM4132TDOU B5 070_NODJ_10F_03 43 | CCGTTCTA IGVFSM1916FXAR,IGVFSM4132TDOU B5 070_NODJ_10F_03 44 | ACTCATTT IGVFSM2219SJUB,IGVFSM9423CHGE B6 071_NODJ_10M_03 45 | GCTTCATA IGVFSM2219SJUB,IGVFSM9423CHGE B6 071_NODJ_10M_03 46 | AGTCTTGG IGVFSM0749UUSU,IGVFSM1724CQMW B7 072_NODJ_10F_03 47 | CTCTGTGC IGVFSM0749UUSU,IGVFSM1724CQMW B7 072_NODJ_10F_03 48 | GGTTCTTC IGVFSM5506IVPG,IGVFSM9890CMQT B8 073_NODJ_10M_03 49 | CCCTTATA IGVFSM5506IVPG,IGVFSM9890CMQT B8 073_NODJ_10M_03 50 | TCATGTTG IGVFSM9188TGLO B9 020_B6J_10F_06 51 | ACTGCTCT IGVFSM9188TGLO B9 020_B6J_10F_06 52 | TCATGTTG IGVFSM2548HETT B9 070_NODJ_10F_06 53 | ACTGCTCT IGVFSM2548HETT B9 070_NODJ_10F_06 54 | ATTTTGCC IGVFSM4152MQAV B10 021_B6J_10M_06 55 | CTCTAATC IGVFSM4152MQAV B10 021_B6J_10M_06 56 | ATTTTGCC IGVFSM6976MFYC B10 071_NODJ_10M_06 57 | CTCTAATC IGVFSM6976MFYC B10 071_NODJ_10M_06 58 | CTTCTGTA IGVFSM1715AZGK B11 024_B6J_10F_06 59 | ACCCTTGC IGVFSM1715AZGK B11 024_B6J_10F_06 60 | CTTCTGTA IGVFSM1795GGVQ B11 072_NODJ_10F_06 61 | ACCCTTGC IGVFSM1795GGVQ B11 072_NODJ_10F_06 62 | GTCCATCT IGVFSM0659JNLJ B12 025_B6J_10M_06 63 | ATCTTAGG IGVFSM0659JNLJ B12 025_B6J_10M_06 64 | GTCCATCT IGVFSM9138HBOW B12 073_NODJ_10M_06 65 | ATCTTAGG IGVFSM9138HBOW B12 073_NODJ_10M_06 66 | GCTATCTC IGVFSM2423BNZZ,IGVFSM4370URZQ C1 026_AJ_10F_03 67 | CATGTCTC IGVFSM2423BNZZ,IGVFSM4370URZQ C1 026_AJ_10F_03 68 | TAGTTTCC IGVFSM2957XPNR,IGVFSM7221OIET C2 029_AJ_10M_03 69 | TCATTGCA IGVFSM2957XPNR,IGVFSM7221OIET C2 029_AJ_10M_03 70 | TCCATTAT IGVFSM7981HLTV,IGVFSM8529NIEC C3 028_AJ_10F_03 71 | ACACCTTT IGVFSM7981HLTV,IGVFSM8529NIEC C3 028_AJ_10F_03 72 | AGGATTAA IGVFSM6144DRYM,IGVFSM8120ZQGC C4 031_AJ_10M_03 73 | AATTTCTC IGVFSM6144DRYM,IGVFSM8120ZQGC C4 031_AJ_10M_03 74 | AATCTTTC IGVFSM0425PEQP,IGVFSM9442VMKA C5 030_AJ_10F_03 75 | ATTCATGG IGVFSM0425PEQP,IGVFSM9442VMKA C5 030_AJ_10F_03 76 | GTCATATG IGVFSM0406DUWH,IGVFSM9867TADD C6 033_AJ_10M_03 77 | ACTTTACC IGVFSM0406DUWH,IGVFSM9867TADD C6 033_AJ_10M_03 78 | GTGCTTCC IGVFSM3195CJCF,IGVFSM6726YGIG C7 032_AJ_10F_03 79 | CTTCTAAC IGVFSM3195CJCF,IGVFSM6726YGIG C7 032_AJ_10F_03 80 | ATGTGTTG IGVFSM4131CTSJ,IGVFSM4651QBMQ C8 035_AJ_10M_03 81 | CTATTTCA IGVFSM4131CTSJ,IGVFSM4651QBMQ C8 035_AJ_10M_03 82 | CCATCTTG IGVFSM7523CIFZ C9 026_AJ_10F_06 83 | TCTCATGC IGVFSM7523CIFZ C9 026_AJ_10F_06 84 | CCATCTTG IGVFSM2489HRKN C9 076_PWKJ_10F_06 85 | TCTCATGC IGVFSM2489HRKN C9 076_PWKJ_10F_06 86 | TACTGTCT IGVFSM5294ZSIL C10 029_AJ_10M_06 87 | ATCCTTAC IGVFSM5294ZSIL C10 029_AJ_10M_06 88 | TACTGTCT IGVFSM9967KFUW C10 077_PWKJ_10M_06 89 | ATCCTTAC IGVFSM9967KFUW C10 077_PWKJ_10M_06 90 | TTCATCGC IGVFSM1802ZPXC C11 028_AJ_10F_06 91 | TAAATATC IGVFSM1802ZPXC C11 028_AJ_10F_06 92 | TTCATCGC IGVFSM9748KTTY C11 078_PWKJ_10F_06 93 | TAAATATC IGVFSM9748KTTY C11 078_PWKJ_10F_06 94 | ACTGTGGG IGVFSM4608HMDV C12 031_AJ_10M_06 95 | TTACCTGC IGVFSM4608HMDV C12 031_AJ_10M_06 96 | ACTGTGGG IGVFSM6943ARXK C12 079_PWKJ_10M_06 97 | TTACCTGC IGVFSM6943ARXK C12 079_PWKJ_10M_06 98 | TCTGTGCC IGVFSM0918MYKM,IGVFSM7550NDQP D1 076_PWKJ_10F_03 99 | CACTTTCA IGVFSM0918MYKM,IGVFSM7550NDQP D1 076_PWKJ_10F_03 100 | TCAATCTC IGVFSM0563DEOO,IGVFSM6013VRIK D2 077_PWKJ_10M_03 101 | CACCTTTA IGVFSM0563DEOO,IGVFSM6013VRIK D2 077_PWKJ_10M_03 102 | GTCCTCTG IGVFSM0623LMKH,IGVFSM6356IYPX D3 078_PWKJ_10F_03 103 | CTGACTTC IGVFSM0623LMKH,IGVFSM6356IYPX D3 078_PWKJ_10F_03 104 | TTACATTC IGVFSM2048SMTE,IGVFSM4224SVKL D4 079_PWKJ_10M_03 105 | CATTTGGA IGVFSM2048SMTE,IGVFSM4224SVKL D4 079_PWKJ_10M_03 106 | ATTCTGTC IGVFSM1463UXNU,IGVFSM3905UDST D5 080_PWKJ_10F_03 107 | GCTCTACT IGVFSM1463UXNU,IGVFSM3905UDST D5 080_PWKJ_10F_03 108 | TGTGTATG IGVFSM0454IWHA,IGVFSM1764RZHQ D6 081_PWKJ_10M_03 109 | GTTACGTA IGVFSM0454IWHA,IGVFSM1764RZHQ D6 081_PWKJ_10M_03 110 | TCCATTTG IGVFSM2111IGAF,IGVFSM7111UROK D7 084_PWKJ_10F_03 111 | CCTGTTGC IGVFSM2111IGAF,IGVFSM7111UROK D7 084_PWKJ_10F_03 112 | TTAGCTTC IGVFSM1227KXDL,IGVFSM5036ECAW D8 085_PWKJ_10M_03 113 | CTATCATC IGVFSM1227KXDL,IGVFSM5036ECAW D8 085_PWKJ_10M_03 114 | GTGCTTGA IGVFSM5549SWHL D9 030_AJ_10F_06 115 | GCTATCAT IGVFSM5549SWHL D9 030_AJ_10F_06 116 | GTGCTTGA IGVFSM8513LDPM D9 080_PWKJ_10F_06 117 | GCTATCAT IGVFSM8513LDPM D9 080_PWKJ_10F_06 118 | GTTTGTGA IGVFSM7128WVEJ D10 033_AJ_10M_06 119 | ACATTCAT IGVFSM7128WVEJ D10 033_AJ_10M_06 120 | GTTTGTGA IGVFSM3449RSOM D10 081_PWKJ_10M_06 121 | ACATTCAT IGVFSM3449RSOM D10 081_PWKJ_10M_06 122 | GAAATTAG IGVFSM2048BQHM D11 032_AJ_10F_06 123 | TTCGCTAC IGVFSM2048BQHM D11 032_AJ_10F_06 124 | GAAATTAG IGVFSM5687CRRX D11 084_PWKJ_10F_06 125 | TTCGCTAC IGVFSM5687CRRX D11 084_PWKJ_10F_06 126 | GCAAATTC IGVFSM2812EMHZ D12 035_AJ_10M_06 127 | CATTCTAC IGVFSM2812EMHZ D12 035_AJ_10M_06 128 | GCAAATTC IGVFSM2657UOQA D12 085_PWKJ_10M_06 129 | CATTCTAC IGVFSM2657UOQA D12 085_PWKJ_10M_06 130 | GAGGTTGA IGVFSM8124ZHLJ,IGVFSM9227EIZD E1 036_129S1J_10F_03 131 | CACTTATC IGVFSM8124ZHLJ,IGVFSM9227EIZD E1 036_129S1J_10F_03 132 | CCTGTCTG IGVFSM0860OBUU,IGVFSM2419NKNV E2 037_129S1J_10M_03 133 | ATAAGCTC IGVFSM0860OBUU,IGVFSM2419NKNV E2 037_129S1J_10M_03 134 | GTGGGTTC IGVFSM0225XPQG,IGVFSM1783ISPH E3 038_129S1J_10F_03 135 | TCATCCTG IGVFSM0225XPQG,IGVFSM1783ISPH E3 038_129S1J_10F_03 136 | TTTGCATC IGVFSM4535GZXJ,IGVFSM9603NVUP E4 041_129S1J_10M_03 137 | CCTGGTAT IGVFSM4535GZXJ,IGVFSM9603NVUP E4 041_129S1J_10M_03 138 | AGGTAATA IGVFSM1865RBAP,IGVFSM3592ZCYS E5 040_129S1J_10F_03 139 | TGGTATAC IGVFSM1865RBAP,IGVFSM3592ZCYS E5 040_129S1J_10F_03 140 | GTGCCTTC IGVFSM2592YCXF,IGVFSM4046THJJ E6 043_129S1J_10M_03 141 | TTGGGAGA IGVFSM2592YCXF,IGVFSM4046THJJ E6 043_129S1J_10M_03 142 | ATGTTTCC IGVFSM0923PDGB,IGVFSM8263PWJC E7 044_129S1J_10F_03 143 | ACTTCATC IGVFSM0923PDGB,IGVFSM8263PWJC E7 044_129S1J_10F_03 144 | CTTAATTC IGVFSM0221ZKMO,IGVFSM9934DIHO E8 045_129S1J_10M_03 145 | TCTCTAGC IGVFSM0221ZKMO,IGVFSM9934DIHO E8 045_129S1J_10M_03 146 | TCTGGCTC IGVFSM9118PKWD E9 036_129S1J_10F_06 147 | ATGCCCTT IGVFSM9118PKWD E9 036_129S1J_10F_06 148 | TCTGGCTC IGVFSM5819SOLY E9 086_CASTJ_10F_06 149 | ATGCCCTT IGVFSM5819SOLY E9 086_CASTJ_10F_06 150 | CATCATTT IGVFSM8184LOKP E10 037_129S1J_10M_06 151 | CCCAATTT IGVFSM8184LOKP E10 037_129S1J_10M_06 152 | CATCATTT IGVFSM0487BHBU E10 087_CASTJ_10M_06 153 | CCCAATTT IGVFSM0487BHBU E10 087_CASTJ_10M_06 154 | GTTGTCTC IGVFSM3629MXTV E11 038_129S1J_10F_06 155 | ACTATATA IGVFSM3629MXTV E11 038_129S1J_10F_06 156 | GTTGTCTC IGVFSM5847JXKA E11 088_CASTJ_10F_06 157 | ACTATATA IGVFSM5847JXKA E11 088_CASTJ_10F_06 158 | ATCTTCTG IGVFSM9345WJHN E12 041_129S1J_10M_06 159 | CTCTATAC IGVFSM9345WJHN E12 041_129S1J_10M_06 160 | ATCTTCTG IGVFSM4021BOPQ E12 089_CASTJ_10M_06 161 | CTCTATAC IGVFSM4021BOPQ E12 089_CASTJ_10M_06 162 | TGTTTGCC IGVFSM7195PKWY,IGVFSM7666QOZY F1 086_CASTJ_10F_03 163 | CTGTCTCA IGVFSM7195PKWY,IGVFSM7666QOZY F1 086_CASTJ_10F_03 164 | TTCTGTCA IGVFSM7317YYMK,IGVFSM8253LIZU F2 087_CASTJ_10M_03 165 | GACCTTTC IGVFSM7317YYMK,IGVFSM8253LIZU F2 087_CASTJ_10M_03 166 | ACGGACTC IGVFSM3708BQMH,IGVFSM8386KIXU F3 088_CASTJ_10F_03 167 | GATTTGGC IGVFSM3708BQMH,IGVFSM8386KIXU F3 088_CASTJ_10F_03 168 | TTTGGTCA IGVFSM6275QJJU,IGVFSM7470VZNE F4 089_CASTJ_10M_03 169 | CGTCTAGG IGVFSM6275QJJU,IGVFSM7470VZNE F4 089_CASTJ_10M_03 170 | TATCCGGG IGVFSM3391TANO,IGVFSM9194WULA F5 090_CASTJ_10F_03 171 | TACTCGAA IGVFSM3391TANO,IGVFSM9194WULA F5 090_CASTJ_10F_03 172 | TGTCATTC IGVFSM3523HTHO,IGVFSM4618XBBU F6 091_CASTJ_10M_03 173 | CAGCCTTT IGVFSM3523HTHO,IGVFSM4618XBBU F6 091_CASTJ_10M_03 174 | ATTCTCTG IGVFSM7747QNMD,IGVFSM8043HCTC F7 094_CASTJ_10F_03 175 | CCTCATTA IGVFSM7747QNMD,IGVFSM8043HCTC F7 094_CASTJ_10F_03 176 | TGGCTTCC IGVFSM0611PVMT,IGVFSM8601VZGE F8 093_CASTJ_10M_03 177 | CTTATACC IGVFSM0611PVMT,IGVFSM8601VZGE F8 093_CASTJ_10M_03 178 | TTGTTGCC IGVFSM5009WOZO F9 040_129S1J_10F_06 179 | TCTATTAC IGVFSM5009WOZO F9 040_129S1J_10F_06 180 | TTGTTGCC IGVFSM4983NNIU F9 090_CASTJ_10F_06 181 | TCTATTAC IGVFSM4983NNIU F9 090_CASTJ_10F_06 182 | GTCATCTC IGVFSM5004FHRH F10 043_129S1J_10M_06 183 | CCTGCATT IGVFSM5004FHRH F10 043_129S1J_10M_06 184 | GTCATCTC IGVFSM2511KNVM F10 091_CASTJ_10M_06 185 | CCTGCATT IGVFSM2511KNVM F10 091_CASTJ_10M_06 186 | TTGCTCAT IGVFSM0279NVKF F11 044_129S1J_10F_06 187 | CAATCCTT IGVFSM0279NVKF F11 044_129S1J_10F_06 188 | TTGCTCAT IGVFSM8621PXJN F11 094_CASTJ_10F_06 189 | CAATCCTT IGVFSM8621PXJN F11 094_CASTJ_10F_06 190 | CTGTCTGC IGVFSM5577TDWZ F12 045_129S1J_10M_06 191 | TTGTCTTA IGVFSM5577TDWZ F12 045_129S1J_10M_06 192 | CTGTCTGC IGVFSM0998PUXL F12 093_CASTJ_10M_06 193 | TTGTCTTA IGVFSM0998PUXL F12 093_CASTJ_10M_06 194 | TATATTCC IGVFSM1395QLCT,IGVFSM2105LIWI G1 058_WSBJ_10F_03 195 | TCACTTTA IGVFSM1395QLCT,IGVFSM2105LIWI G1 058_WSBJ_10F_03 196 | ATATTGGC IGVFSM1203GHYB,IGVFSM6575IFHC G2 057_WSBJ_10M_03 197 | TGCTTGGG IGVFSM1203GHYB,IGVFSM6575IFHC G2 057_WSBJ_10M_03 198 | GTGTCCTC IGVFSM1996USDH,IGVFSM9916UWTV G3 060_WSBJ_10F_03 199 | CGCTCATT IGVFSM1996USDH,IGVFSM9916UWTV G3 060_WSBJ_10F_03 200 | ATCTTCAT IGVFSM1116FVJP,IGVFSM1295CUJX G4 059_WSBJ_10M_03 201 | GCCTCTAT IGVFSM1116FVJP,IGVFSM1295CUJX G4 059_WSBJ_10M_03 202 | CGTGGTTG IGVFSM2903TFAJ,IGVFSM5785PIAM G5 062_WSBJ_10F_03 203 | GAGCACAA IGVFSM2903TFAJ,IGVFSM5785PIAM G5 062_WSBJ_10F_03 204 | TTGCATCC IGVFSM0431DSEH,IGVFSM0898KHQX G6 061_WSBJ_10M_03 205 | CTCTTAAC IGVFSM0431DSEH,IGVFSM0898KHQX G6 061_WSBJ_10M_03 206 | TCTTAATC IGVFSM1901NWCD,IGVFSM7994PCAR G7 096_WSBJ_10F_03 207 | TCTAGGCT IGVFSM1901NWCD,IGVFSM7994PCAR G7 096_WSBJ_10F_03 208 | TGCATTTC IGVFSM1039KCGC,IGVFSM8727ZEXW G8 063_WSBJ_10M_03 209 | AATTCTGC IGVFSM1039KCGC,IGVFSM8727ZEXW G8 063_WSBJ_10M_03 210 | GATGTTTC IGVFSM0510YNAJ G9 046_NZOJ_10F_06 211 | CATTCTCA IGVFSM0510YNAJ G9 046_NZOJ_10F_06 212 | GATGTTTC IGVFSM3432ZCOX G9 058_WSBJ_10F_06 213 | CATTCTCA IGVFSM3432ZCOX G9 058_WSBJ_10F_06 214 | ATCTTGTC IGVFSM7577ZSZL G10 047_NZOJ_10M_06 215 | ACTTGCCT IGVFSM7577ZSZL G10 047_NZOJ_10M_06 216 | ATCTTGTC IGVFSM1456DXFQ G10 057_WSBJ_10M_06 217 | ACTTGCCT IGVFSM1456DXFQ G10 057_WSBJ_10M_06 218 | TCATATTC IGVFSM4204PXKJ G11 048_NZOJ_10F_06 219 | ATCATTGC IGVFSM4204PXKJ G11 048_NZOJ_10F_06 220 | TCATATTC IGVFSM7766OOSU G11 060_WSBJ_10F_06 221 | ATCATTGC IGVFSM7766OOSU G11 060_WSBJ_10F_06 222 | TGGCCTCT IGVFSM8056EVEE G12 049_NZOJ_10M_06 223 | GTTCAACA IGVFSM8056EVEE G12 049_NZOJ_10M_06 224 | TGGCCTCT IGVFSM6894ALPA G12 059_WSBJ_10M_06 225 | GTTCAACA IGVFSM6894ALPA G12 059_WSBJ_10M_06 226 | CGTTGTCT IGVFSM0322EOHO,IGVFSM4189AKUL H1 092_CASTJ_10F_03 227 | CCATTTGC IGVFSM0322EOHO,IGVFSM4189AKUL H1 092_CASTJ_10F_03 228 | TCTTGTCA IGVFSM7371QPPK,IGVFSM9072COND H2 047_NZOJ_10M_03 229 | GACTTTGC IGVFSM7371QPPK,IGVFSM9072COND H2 047_NZOJ_10M_03 230 | TATTCCTG IGVFSM8490EBUM,IGVFSM9852CDAM H3 048_NZOJ_10F_03 231 | ATTGGCTC IGVFSM8490EBUM,IGVFSM9852CDAM H3 048_NZOJ_10F_03 232 | TCCATGTC IGVFSM0101ITFE,IGVFSM4528ONTR H4 049_NZOJ_10M_03 233 | GTGCTAGC IGVFSM0101ITFE,IGVFSM4528ONTR H4 049_NZOJ_10M_03 234 | TTGTCATC IGVFSM0561GQRI,IGVFSM5306QAYC H5 050_NZOJ_10F_03 235 | CTTTCAAC IGVFSM0561GQRI,IGVFSM5306QAYC H5 050_NZOJ_10F_03 236 | ATTTCCTG IGVFSM1083MRIY,IGVFSM5958RVMJ H6 051_NZOJ_10M_03 237 | ACTATTGC IGVFSM1083MRIY,IGVFSM5958RVMJ H6 051_NZOJ_10M_03 238 | GTGTCTCC IGVFSM6096DCNO,IGVFSM8959FRNP H7 052_NZOJ_10F_03 239 | ACTGGCTT IGVFSM6096DCNO,IGVFSM8959FRNP H7 052_NZOJ_10F_03 240 | GTGTGTGT IGVFSM8856ZHGA,IGVFSM9234QGBN H8 053_NZOJ_10M_03 241 | ATTAGGCT IGVFSM8856ZHGA,IGVFSM9234QGBN H8 053_NZOJ_10M_03 242 | TATGCTTC IGVFSM8878JBBO H9 050_NZOJ_10F_06 243 | GCCTTTCA IGVFSM8878JBBO H9 050_NZOJ_10F_06 244 | TATGCTTC IGVFSM3113AHHA H9 062_WSBJ_10F_06 245 | GCCTTTCA IGVFSM3113AHHA H9 062_WSBJ_10F_06 246 | ATGGTGTT IGVFSM2214BDBR H10 051_NZOJ_10M_06 247 | ATTCTAGG IGVFSM2214BDBR H10 051_NZOJ_10M_06 248 | ATGGTGTT IGVFSM8737KUQW H10 061_WSBJ_10M_06 249 | ATTCTAGG IGVFSM8737KUQW H10 061_WSBJ_10M_06 250 | GAATAATG IGVFSM8146OBNU H11 052_NZOJ_10F_06 251 | CCTTACAT IGVFSM8146OBNU H11 052_NZOJ_10F_06 252 | GAATAATG IGVFSM6802LFPK H11 096_WSBJ_10F_06 253 | CCTTACAT IGVFSM6802LFPK H11 096_WSBJ_10F_06 254 | CCTCTGTG IGVFSM4952NHSA H12 053_NZOJ_10M_06 255 | ACATTTGG IGVFSM4952NHSA H12 053_NZOJ_10M_06 256 | CCTCTGTG IGVFSM6965RRET H12 063_WSBJ_10M_06 257 | ACATTTGG IGVFSM6965RRET H12 063_WSBJ_10M_06 258 | -------------------------------------------------------------------------------- /configs/IGVF_004_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM2397OXJE A1 016_B6J_10F_06 3 | CATTCCTA IGVFSM2397OXJE A1 016_B6J_10F_06 4 | CTGCTTTG IGVFSM6821QIOI A2 017_B6J_10M_06 5 | CTTCATCA IGVFSM6821QIOI A2 017_B6J_10M_06 6 | CTAAGGGA IGVFSM9283STYP A3 018_B6J_10F_06 7 | CCTATATC IGVFSM9283STYP A3 018_B6J_10F_06 8 | GCTTATAG IGVFSM3819GVRA A4 019_B6J_10M_06 9 | ACATTTAC IGVFSM3819GVRA A4 019_B6J_10M_06 10 | TCTGATCC IGVFSM9188TGLO A5 020_B6J_10F_06 11 | ACTTAGCT IGVFSM9188TGLO A5 020_B6J_10F_06 12 | TCTCTTGG IGVFSM4152MQAV A6 021_B6J_10M_06 13 | CCAATTCT IGVFSM4152MQAV A6 021_B6J_10M_06 14 | CAATTTCC IGVFSM1715AZGK A7 024_B6J_10F_06 15 | GCCTATCT IGVFSM1715AZGK A7 024_B6J_10F_06 16 | AGTCTCTT IGVFSM0659JNLJ A8 025_B6J_10M_06 17 | ATGCTGCT IGVFSM0659JNLJ A8 025_B6J_10M_06 18 | TGCTGCTC IGVFSM2609IWQV A9 016_B6J_10F_05 19 | CATTTACA IGVFSM2609IWQV A9 016_B6J_10F_05 20 | TGCTGCTC IGVFSM7322GJHR A9 066_NODJ_10F_05 21 | CATTTACA IGVFSM7322GJHR A9 066_NODJ_10F_05 22 | GTATTTCC IGVFSM5795GRDC A10 017_B6J_10M_05 23 | ACTCGTAA IGVFSM5795GRDC A10 017_B6J_10M_05 24 | GTATTTCC IGVFSM1637CAZY A10 067_NODJ_10M_05 25 | ACTCGTAA IGVFSM1637CAZY A10 067_NODJ_10M_05 26 | TTCCTGTG IGVFSM9969QCIJ A11 018_B6J_10F_05 27 | CCTTTGCA IGVFSM9969QCIJ A11 018_B6J_10F_05 28 | TTCCTGTG IGVFSM8221YADP A11 068_NODJ_10F_05 29 | CCTTTGCA IGVFSM8221YADP A11 068_NODJ_10F_05 30 | GCTGCTTC IGVFSM6046EOEX A12 019_B6J_10M_05 31 | ACTCCTGC IGVFSM6046EOEX A12 019_B6J_10M_05 32 | GCTGCTTC IGVFSM2794WEMQ A12 069_NODJ_10M_05 33 | ACTCCTGC IGVFSM2794WEMQ A12 069_NODJ_10M_05 34 | TATGTGTC IGVFSM0400KSXT B1 066_NODJ_10F_06 35 | ATTTGGCA IGVFSM0400KSXT B1 066_NODJ_10F_06 36 | CAATTCTC IGVFSM8486IRSE B2 067_NODJ_10M_06 37 | TTATTCTG IGVFSM8486IRSE B2 067_NODJ_10M_06 38 | TGGTCTCC IGVFSM6061AIFT B3 068_NODJ_10F_06 39 | TCATGCTC IGVFSM6061AIFT B3 068_NODJ_10F_06 40 | GCTCTTTA IGVFSM9555SHCP B4 069_NODJ_10M_06 41 | CATACTTC IGVFSM9555SHCP B4 069_NODJ_10M_06 42 | GCTGCATG IGVFSM2548HETT B5 070_NODJ_10F_06 43 | CCGTTCTA IGVFSM2548HETT B5 070_NODJ_10F_06 44 | ACTCATTT IGVFSM6976MFYC B6 071_NODJ_10M_06 45 | GCTTCATA IGVFSM6976MFYC B6 071_NODJ_10M_06 46 | AGTCTTGG IGVFSM1795GGVQ B7 072_NODJ_10F_06 47 | CTCTGTGC IGVFSM1795GGVQ B7 072_NODJ_10F_06 48 | GGTTCTTC IGVFSM9138HBOW B8 073_NODJ_10M_06 49 | CCCTTATA IGVFSM9138HBOW B8 073_NODJ_10M_06 50 | TCATGTTG IGVFSM0660OYYA B9 020_B6J_10F_05 51 | ACTGCTCT IGVFSM0660OYYA B9 020_B6J_10F_05 52 | TCATGTTG IGVFSM1557PJAI B9 070_NODJ_10F_05 53 | ACTGCTCT IGVFSM1557PJAI B9 070_NODJ_10F_05 54 | ATTTTGCC IGVFSM9376MAOE B10 021_B6J_10M_05 55 | CTCTAATC IGVFSM9376MAOE B10 021_B6J_10M_05 56 | ATTTTGCC IGVFSM5227MWGM B10 071_NODJ_10M_05 57 | CTCTAATC IGVFSM5227MWGM B10 071_NODJ_10M_05 58 | CTTCTGTA IGVFSM4625KNRU B11 024_B6J_10F_05 59 | ACCCTTGC IGVFSM4625KNRU B11 024_B6J_10F_05 60 | CTTCTGTA IGVFSM8370FQBH B11 072_NODJ_10F_05 61 | ACCCTTGC IGVFSM8370FQBH B11 072_NODJ_10F_05 62 | GTCCATCT IGVFSM9141WALR B12 025_B6J_10M_05 63 | ATCTTAGG IGVFSM9141WALR B12 025_B6J_10M_05 64 | GTCCATCT IGVFSM3979KZZX B12 073_NODJ_10M_05 65 | ATCTTAGG IGVFSM3979KZZX B12 073_NODJ_10M_05 66 | GCTATCTC IGVFSM7523CIFZ C1 026_AJ_10F_06 67 | CATGTCTC IGVFSM7523CIFZ C1 026_AJ_10F_06 68 | TAGTTTCC IGVFSM5294ZSIL C2 029_AJ_10M_06 69 | TCATTGCA IGVFSM5294ZSIL C2 029_AJ_10M_06 70 | TCCATTAT IGVFSM1802ZPXC C3 028_AJ_10F_06 71 | ACACCTTT IGVFSM1802ZPXC C3 028_AJ_10F_06 72 | AGGATTAA IGVFSM4608HMDV C4 031_AJ_10M_06 73 | AATTTCTC IGVFSM4608HMDV C4 031_AJ_10M_06 74 | AATCTTTC IGVFSM5549SWHL C5 030_AJ_10F_06 75 | ATTCATGG IGVFSM5549SWHL C5 030_AJ_10F_06 76 | GTCATATG IGVFSM7128WVEJ C6 033_AJ_10M_06 77 | ACTTTACC IGVFSM7128WVEJ C6 033_AJ_10M_06 78 | GTGCTTCC IGVFSM2048BQHM C7 032_AJ_10F_06 79 | CTTCTAAC IGVFSM2048BQHM C7 032_AJ_10F_06 80 | ATGTGTTG IGVFSM2812EMHZ C8 035_AJ_10M_06 81 | CTATTTCA IGVFSM2812EMHZ C8 035_AJ_10M_06 82 | CCATCTTG IGVFSM7760MHIK C9 026_AJ_10F_05 83 | TCTCATGC IGVFSM7760MHIK C9 026_AJ_10F_05 84 | CCATCTTG IGVFSM8222BTFH C9 076_PWKJ_10F_05 85 | TCTCATGC IGVFSM8222BTFH C9 076_PWKJ_10F_05 86 | TACTGTCT IGVFSM8587LUPL C10 029_AJ_10M_05 87 | ATCCTTAC IGVFSM8587LUPL C10 029_AJ_10M_05 88 | TACTGTCT IGVFSM6195ZDYB C10 077_PWKJ_10M_05 89 | ATCCTTAC IGVFSM6195ZDYB C10 077_PWKJ_10M_05 90 | TTCATCGC IGVFSM8501AGYE C11 028_AJ_10F_05 91 | TAAATATC IGVFSM8501AGYE C11 028_AJ_10F_05 92 | TTCATCGC IGVFSM0598HJAL C11 078_PWKJ_10F_05 93 | TAAATATC IGVFSM0598HJAL C11 078_PWKJ_10F_05 94 | ACTGTGGG IGVFSM9889OUOI C12 031_AJ_10M_05 95 | TTACCTGC IGVFSM9889OUOI C12 031_AJ_10M_05 96 | ACTGTGGG IGVFSM7868PMHQ C12 079_PWKJ_10M_05 97 | TTACCTGC IGVFSM7868PMHQ C12 079_PWKJ_10M_05 98 | TCTGTGCC IGVFSM2489HRKN D1 076_PWKJ_10F_06 99 | CACTTTCA IGVFSM2489HRKN D1 076_PWKJ_10F_06 100 | TCAATCTC IGVFSM9967KFUW D2 077_PWKJ_10M_06 101 | CACCTTTA IGVFSM9967KFUW D2 077_PWKJ_10M_06 102 | GTCCTCTG IGVFSM9748KTTY D3 078_PWKJ_10F_06 103 | CTGACTTC IGVFSM9748KTTY D3 078_PWKJ_10F_06 104 | TTACATTC IGVFSM6943ARXK D4 079_PWKJ_10M_06 105 | CATTTGGA IGVFSM6943ARXK D4 079_PWKJ_10M_06 106 | ATTCTGTC IGVFSM8513LDPM D5 080_PWKJ_10F_06 107 | GCTCTACT IGVFSM8513LDPM D5 080_PWKJ_10F_06 108 | TGTGTATG IGVFSM3449RSOM D6 081_PWKJ_10M_06 109 | GTTACGTA IGVFSM3449RSOM D6 081_PWKJ_10M_06 110 | TCCATTTG IGVFSM5687CRRX D7 084_PWKJ_10F_06 111 | CCTGTTGC IGVFSM5687CRRX D7 084_PWKJ_10F_06 112 | TTAGCTTC IGVFSM2657UOQA D8 085_PWKJ_10M_06 113 | CTATCATC IGVFSM2657UOQA D8 085_PWKJ_10M_06 114 | GTGCTTGA IGVFSM9122CTMU D9 030_AJ_10F_05 115 | GCTATCAT IGVFSM9122CTMU D9 030_AJ_10F_05 116 | GTGCTTGA IGVFSM4205CGEZ D9 080_PWKJ_10F_05 117 | GCTATCAT IGVFSM4205CGEZ D9 080_PWKJ_10F_05 118 | GTTTGTGA IGVFSM8488GXLP D10 033_AJ_10M_05 119 | ACATTCAT IGVFSM8488GXLP D10 033_AJ_10M_05 120 | GTTTGTGA IGVFSM9316HSZQ D10 081_PWKJ_10M_05 121 | ACATTCAT IGVFSM9316HSZQ D10 081_PWKJ_10M_05 122 | GAAATTAG IGVFSM3749AQYK D11 032_AJ_10F_05 123 | TTCGCTAC IGVFSM3749AQYK D11 032_AJ_10F_05 124 | GAAATTAG IGVFSM2116DCHR D11 044_129S1J_10F_05 125 | TTCGCTAC IGVFSM2116DCHR D11 044_129S1J_10F_05 126 | GCAAATTC IGVFSM2286VGQO D12 035_AJ_10M_05 127 | CATTCTAC IGVFSM2286VGQO D12 035_AJ_10M_05 128 | GCAAATTC IGVFSM6420ZYPO D12 085_PWKJ_10M_05 129 | CATTCTAC IGVFSM6420ZYPO D12 085_PWKJ_10M_05 130 | GAGGTTGA IGVFSM9118PKWD E1 036_129S1J_10F_06 131 | CACTTATC IGVFSM9118PKWD E1 036_129S1J_10F_06 132 | CCTGTCTG IGVFSM8184LOKP E2 037_129S1J_10M_06 133 | ATAAGCTC IGVFSM8184LOKP E2 037_129S1J_10M_06 134 | GTGGGTTC IGVFSM3629MXTV E3 038_129S1J_10F_06 135 | TCATCCTG IGVFSM3629MXTV E3 038_129S1J_10F_06 136 | TTTGCATC IGVFSM9345WJHN E4 041_129S1J_10M_06 137 | CCTGGTAT IGVFSM9345WJHN E4 041_129S1J_10M_06 138 | AGGTAATA IGVFSM5009WOZO E5 040_129S1J_10F_06 139 | TGGTATAC IGVFSM5009WOZO E5 040_129S1J_10F_06 140 | GTGCCTTC IGVFSM5004FHRH E6 043_129S1J_10M_06 141 | TTGGGAGA IGVFSM5004FHRH E6 043_129S1J_10M_06 142 | ATGTTTCC IGVFSM0279NVKF E7 044_129S1J_10F_06 143 | ACTTCATC IGVFSM0279NVKF E7 044_129S1J_10F_06 144 | CTTAATTC IGVFSM5577TDWZ E8 045_129S1J_10M_06 145 | TCTCTAGC IGVFSM5577TDWZ E8 045_129S1J_10M_06 146 | TCTGGCTC IGVFSM3021PVNM E9 036_129S1J_10F_05 147 | ATGCCCTT IGVFSM3021PVNM E9 036_129S1J_10F_05 148 | TCTGGCTC IGVFSM7228AIWD E9 086_CASTJ_10F_05 149 | ATGCCCTT IGVFSM7228AIWD E9 086_CASTJ_10F_05 150 | CATCATTT IGVFSM3344MCNS E10 037_129S1J_10M_05 151 | CCCAATTT IGVFSM3344MCNS E10 037_129S1J_10M_05 152 | CATCATTT IGVFSM9408IVIR E10 087_CASTJ_10M_05 153 | CCCAATTT IGVFSM9408IVIR E10 087_CASTJ_10M_05 154 | GTTGTCTC IGVFSM9049MUBB E11 038_129S1J_10F_05 155 | ACTATATA IGVFSM9049MUBB E11 038_129S1J_10F_05 156 | GTTGTCTC IGVFSM3996IQCS E11 088_CASTJ_10F_05 157 | ACTATATA IGVFSM3996IQCS E11 088_CASTJ_10F_05 158 | ATCTTCTG IGVFSM6336XNLQ E12 041_129S1J_10M_05 159 | CTCTATAC IGVFSM6336XNLQ E12 041_129S1J_10M_05 160 | ATCTTCTG IGVFSM0151EMWS E12 089_CASTJ_10M_05 161 | CTCTATAC IGVFSM0151EMWS E12 089_CASTJ_10M_05 162 | TGTTTGCC IGVFSM5819SOLY F1 086_CASTJ_10F_06 163 | CTGTCTCA IGVFSM5819SOLY F1 086_CASTJ_10F_06 164 | TTCTGTCA IGVFSM0487BHBU F2 087_CASTJ_10M_06 165 | GACCTTTC IGVFSM0487BHBU F2 087_CASTJ_10M_06 166 | ACGGACTC IGVFSM5847JXKA F3 088_CASTJ_10F_06 167 | GATTTGGC IGVFSM5847JXKA F3 088_CASTJ_10F_06 168 | TTTGGTCA IGVFSM4021BOPQ F4 089_CASTJ_10M_06 169 | CGTCTAGG IGVFSM4021BOPQ F4 089_CASTJ_10M_06 170 | TATCCGGG IGVFSM4983NNIU F5 090_CASTJ_10F_06 171 | TACTCGAA IGVFSM4983NNIU F5 090_CASTJ_10F_06 172 | TGTCATTC IGVFSM2511KNVM F6 091_CASTJ_10M_06 173 | CAGCCTTT IGVFSM2511KNVM F6 091_CASTJ_10M_06 174 | ATTCTCTG IGVFSM8621PXJN F7 094_CASTJ_10F_06 175 | CCTCATTA IGVFSM8621PXJN F7 094_CASTJ_10F_06 176 | TGGCTTCC IGVFSM0998PUXL F8 093_CASTJ_10M_06 177 | CTTATACC IGVFSM0998PUXL F8 093_CASTJ_10M_06 178 | TTGTTGCC IGVFSM7035ACUG F9 040_129S1J_10F_05 179 | TCTATTAC IGVFSM7035ACUG F9 040_129S1J_10F_05 180 | TTGTTGCC IGVFSM6880XYMR F9 090_CASTJ_10F_05 181 | TCTATTAC IGVFSM6880XYMR F9 090_CASTJ_10F_05 182 | GTCATCTC IGVFSM5467HYTI F10 043_129S1J_10M_05 183 | CCTGCATT IGVFSM5467HYTI F10 043_129S1J_10M_05 184 | GTCATCTC IGVFSM9848ACFP F10 091_CASTJ_10M_05 185 | CCTGCATT IGVFSM9848ACFP F10 091_CASTJ_10M_05 186 | TTGCTCAT IGVFSM3421MHKE F11 084_PWKJ_10F_05 187 | CAATCCTT IGVFSM3421MHKE F11 084_PWKJ_10F_05 188 | TTGCTCAT IGVFSM1855TZJL F11 094_CASTJ_10F_05 189 | CAATCCTT IGVFSM1855TZJL F11 094_CASTJ_10F_05 190 | CTGTCTGC IGVFSM9876UKZX F12 045_129S1J_10M_05 191 | TTGTCTTA IGVFSM9876UKZX F12 045_129S1J_10M_05 192 | CTGTCTGC IGVFSM8245FNTV F12 093_CASTJ_10M_05 193 | TTGTCTTA IGVFSM8245FNTV F12 093_CASTJ_10M_05 194 | TATATTCC IGVFSM3432ZCOX G1 058_WSBJ_10F_06 195 | TCACTTTA IGVFSM3432ZCOX G1 058_WSBJ_10F_06 196 | ATATTGGC IGVFSM1456DXFQ G2 057_WSBJ_10M_06 197 | TGCTTGGG IGVFSM1456DXFQ G2 057_WSBJ_10M_06 198 | GTGTCCTC IGVFSM7766OOSU G3 060_WSBJ_10F_06 199 | CGCTCATT IGVFSM7766OOSU G3 060_WSBJ_10F_06 200 | ATCTTCAT IGVFSM6894ALPA G4 059_WSBJ_10M_06 201 | GCCTCTAT IGVFSM6894ALPA G4 059_WSBJ_10M_06 202 | CGTGGTTG IGVFSM3113AHHA G5 062_WSBJ_10F_06 203 | GAGCACAA IGVFSM3113AHHA G5 062_WSBJ_10F_06 204 | TTGCATCC IGVFSM8737KUQW G6 061_WSBJ_10M_06 205 | CTCTTAAC IGVFSM8737KUQW G6 061_WSBJ_10M_06 206 | TCTTAATC IGVFSM6802LFPK G7 096_WSBJ_10F_06 207 | TCTAGGCT IGVFSM6802LFPK G7 096_WSBJ_10F_06 208 | TGCATTTC IGVFSM6965RRET G8 063_WSBJ_10M_06 209 | AATTCTGC IGVFSM6965RRET G8 063_WSBJ_10M_06 210 | GATGTTTC IGVFSM9090ZNRS G9 046_NZOJ_10F_05 211 | CATTCTCA IGVFSM9090ZNRS G9 046_NZOJ_10F_05 212 | GATGTTTC IGVFSM6714CAWV G9 058_WSBJ_10F_05 213 | CATTCTCA IGVFSM6714CAWV G9 058_WSBJ_10F_05 214 | ATCTTGTC IGVFSM4130EMOU G10 047_NZOJ_10M_05 215 | ACTTGCCT IGVFSM4130EMOU G10 047_NZOJ_10M_05 216 | ATCTTGTC IGVFSM6424UEBK G10 057_WSBJ_10M_05 217 | ACTTGCCT IGVFSM6424UEBK G10 057_WSBJ_10M_05 218 | TCATATTC IGVFSM1384SGZS G11 048_NZOJ_10F_05 219 | ATCATTGC IGVFSM1384SGZS G11 048_NZOJ_10F_05 220 | TCATATTC IGVFSM0803WGCL G11 060_WSBJ_10F_05 221 | ATCATTGC IGVFSM0803WGCL G11 060_WSBJ_10F_05 222 | TGGCCTCT IGVFSM6644MYFA G12 049_NZOJ_10M_05 223 | GTTCAACA IGVFSM6644MYFA G12 049_NZOJ_10M_05 224 | TGGCCTCT IGVFSM0434YXCE G12 059_WSBJ_10M_05 225 | GTTCAACA IGVFSM0434YXCE G12 059_WSBJ_10M_05 226 | CGTTGTCT IGVFSM0510YNAJ H1 046_NZOJ_10F_06 227 | CCATTTGC IGVFSM0510YNAJ H1 046_NZOJ_10F_06 228 | TCTTGTCA IGVFSM7577ZSZL H2 047_NZOJ_10M_06 229 | GACTTTGC IGVFSM7577ZSZL H2 047_NZOJ_10M_06 230 | TATTCCTG IGVFSM4204PXKJ H3 048_NZOJ_10F_06 231 | ATTGGCTC IGVFSM4204PXKJ H3 048_NZOJ_10F_06 232 | TCCATGTC IGVFSM8056EVEE H4 049_NZOJ_10M_06 233 | GTGCTAGC IGVFSM8056EVEE H4 049_NZOJ_10M_06 234 | TTGTCATC IGVFSM8878JBBO H5 050_NZOJ_10F_06 235 | CTTTCAAC IGVFSM8878JBBO H5 050_NZOJ_10F_06 236 | ATTTCCTG IGVFSM2214BDBR H6 051_NZOJ_10M_06 237 | ACTATTGC IGVFSM2214BDBR H6 051_NZOJ_10M_06 238 | GTGTCTCC IGVFSM8146OBNU H7 052_NZOJ_10F_06 239 | ACTGGCTT IGVFSM8146OBNU H7 052_NZOJ_10F_06 240 | GTGTGTGT IGVFSM4952NHSA H8 053_NZOJ_10M_06 241 | ATTAGGCT IGVFSM4952NHSA H8 053_NZOJ_10M_06 242 | TATGCTTC IGVFSM9429JZJC H9 050_NZOJ_10F_05 243 | GCCTTTCA IGVFSM9429JZJC H9 050_NZOJ_10F_05 244 | TATGCTTC IGVFSM1705RPMT H9 062_WSBJ_10F_05 245 | GCCTTTCA IGVFSM1705RPMT H9 062_WSBJ_10F_05 246 | ATGGTGTT IGVFSM1239ETDH H10 051_NZOJ_10M_05 247 | ATTCTAGG IGVFSM1239ETDH H10 051_NZOJ_10M_05 248 | ATGGTGTT IGVFSM4873REQN H10 061_WSBJ_10M_05 249 | ATTCTAGG IGVFSM4873REQN H10 061_WSBJ_10M_05 250 | GAATAATG IGVFSM3658ESYZ H11 052_NZOJ_10F_05 251 | CCTTACAT IGVFSM3658ESYZ H11 052_NZOJ_10F_05 252 | GAATAATG IGVFSM3444WPKV H11 096_WSBJ_10F_05 253 | CCTTACAT IGVFSM3444WPKV H11 096_WSBJ_10F_05 254 | CCTCTGTG IGVFSM7821JHFX H12 053_NZOJ_10M_05 255 | ACATTTGG IGVFSM7821JHFX H12 053_NZOJ_10M_05 256 | CCTCTGTG IGVFSM3622HQCN H12 063_WSBJ_10M_05 257 | ACATTTGG IGVFSM3622HQCN H12 063_WSBJ_10M_05 258 | -------------------------------------------------------------------------------- /configs/IGVF_005_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM2609IWQV A1 016_B6J_10F_05 3 | CATTCCTA IGVFSM2609IWQV A1 016_B6J_10F_05 4 | CTGCTTTG IGVFSM5795GRDC A2 017_B6J_10M_05 5 | CTTCATCA IGVFSM5795GRDC A2 017_B6J_10M_05 6 | CTAAGGGA IGVFSM9969QCIJ A3 018_B6J_10F_05 7 | CCTATATC IGVFSM9969QCIJ A3 018_B6J_10F_05 8 | GCTTATAG IGVFSM6046EOEX A4 019_B6J_10M_05 9 | ACATTTAC IGVFSM6046EOEX A4 019_B6J_10M_05 10 | TCTGATCC IGVFSM1078KTYU,IGVFSM8134HPUH A5 092_CASTJ_10F_01 11 | ACTTAGCT IGVFSM1078KTYU,IGVFSM8134HPUH A5 092_CASTJ_10F_01 12 | TCTCTTGG IGVFSM9376MAOE A6 021_B6J_10M_05 13 | CCAATTCT IGVFSM9376MAOE A6 021_B6J_10M_05 14 | CAATTTCC IGVFSM4625KNRU A7 024_B6J_10F_05 15 | GCCTATCT IGVFSM4625KNRU A7 024_B6J_10F_05 16 | AGTCTCTT IGVFSM9141WALR A8 025_B6J_10M_05 17 | ATGCTGCT IGVFSM9141WALR A8 025_B6J_10M_05 18 | TGCTGCTC IGVFSM4465YOJN,IGVFSM5984CJUU A9 016_B6J_10F_01 19 | CATTTACA IGVFSM4465YOJN,IGVFSM5984CJUU A9 016_B6J_10F_01 20 | TGCTGCTC IGVFSM3183PSGJ,IGVFSM6418OJGM A9 066_NODJ_10F_01 21 | CATTTACA IGVFSM3183PSGJ,IGVFSM6418OJGM A9 066_NODJ_10F_01 22 | GTATTTCC IGVFSM5230YSVJ,IGVFSM6071JHCX A10 017_B6J_10M_01 23 | ACTCGTAA IGVFSM5230YSVJ,IGVFSM6071JHCX A10 017_B6J_10M_01 24 | GTATTTCC IGVFSM1910QUCB,IGVFSM6194RATY A10 067_NODJ_10M_01 25 | ACTCGTAA IGVFSM1910QUCB,IGVFSM6194RATY A10 067_NODJ_10M_01 26 | TTCCTGTG IGVFSM5188HZIG,IGVFSM9214NKTQ A11 018_B6J_10F_01 27 | CCTTTGCA IGVFSM5188HZIG,IGVFSM9214NKTQ A11 018_B6J_10F_01 28 | TTCCTGTG IGVFSM4182XRQE,IGVFSM8455TNVO A11 068_NODJ_10F_01 29 | CCTTTGCA IGVFSM4182XRQE,IGVFSM8455TNVO A11 068_NODJ_10F_01 30 | GCTGCTTC IGVFSM0166IBCH,IGVFSM6699LJHC A12 019_B6J_10M_01 31 | ACTCCTGC IGVFSM0166IBCH,IGVFSM6699LJHC A12 019_B6J_10M_01 32 | GCTGCTTC IGVFSM6842OMYX,IGVFSM8873UKSN A12 069_NODJ_10M_01 33 | ACTCCTGC IGVFSM6842OMYX,IGVFSM8873UKSN A12 069_NODJ_10M_01 34 | TATGTGTC IGVFSM7322GJHR B1 066_NODJ_10F_05 35 | ATTTGGCA IGVFSM7322GJHR B1 066_NODJ_10F_05 36 | CAATTCTC IGVFSM1637CAZY B2 067_NODJ_10M_05 37 | TTATTCTG IGVFSM1637CAZY B2 067_NODJ_10M_05 38 | TGGTCTCC IGVFSM8221YADP B3 068_NODJ_10F_05 39 | TCATGCTC IGVFSM8221YADP B3 068_NODJ_10F_05 40 | GCTCTTTA IGVFSM2794WEMQ B4 069_NODJ_10M_05 41 | CATACTTC IGVFSM2794WEMQ B4 069_NODJ_10M_05 42 | GCTGCATG IGVFSM1557PJAI B5 070_NODJ_10F_05 43 | CCGTTCTA IGVFSM1557PJAI B5 070_NODJ_10F_05 44 | ACTCATTT IGVFSM5227MWGM B6 071_NODJ_10M_05 45 | GCTTCATA IGVFSM5227MWGM B6 071_NODJ_10M_05 46 | AGTCTTGG IGVFSM8370FQBH B7 072_NODJ_10F_05 47 | CTCTGTGC IGVFSM8370FQBH B7 072_NODJ_10F_05 48 | GGTTCTTC IGVFSM3979KZZX B8 073_NODJ_10M_05 49 | CCCTTATA IGVFSM3979KZZX B8 073_NODJ_10M_05 50 | TCATGTTG IGVFSM3470VQGS,IGVFSM8528YUHU B9 020_B6J_10F_01 51 | ACTGCTCT IGVFSM3470VQGS,IGVFSM8528YUHU B9 020_B6J_10F_01 52 | TCATGTTG IGVFSM0017ZTCP,IGVFSM1602MMIE B9 070_NODJ_10F_01 53 | ACTGCTCT IGVFSM0017ZTCP,IGVFSM1602MMIE B9 070_NODJ_10F_01 54 | ATTTTGCC IGVFSM7323JYDH,IGVFSM8952OBMF B10 021_B6J_10M_01 55 | CTCTAATC IGVFSM7323JYDH,IGVFSM8952OBMF B10 021_B6J_10M_01 56 | ATTTTGCC IGVFSM6636PLRM,IGVFSM8886HJDO B10 071_NODJ_10M_01 57 | CTCTAATC IGVFSM6636PLRM,IGVFSM8886HJDO B10 071_NODJ_10M_01 58 | CTTCTGTA IGVFSM1381VQIA,IGVFSM8656OHKM B11 024_B6J_10F_01 59 | ACCCTTGC IGVFSM1381VQIA,IGVFSM8656OHKM B11 024_B6J_10F_01 60 | CTTCTGTA IGVFSM0442MPEV,IGVFSM9173JXFM B11 072_NODJ_10F_01 61 | ACCCTTGC IGVFSM0442MPEV,IGVFSM9173JXFM B11 072_NODJ_10F_01 62 | GTCCATCT IGVFSM1156KMPC,IGVFSM4934KHPJ B12 025_B6J_10M_01 63 | ATCTTAGG IGVFSM1156KMPC,IGVFSM4934KHPJ B12 025_B6J_10M_01 64 | GTCCATCT IGVFSM0489RZXG,IGVFSM8174YDBO B12 073_NODJ_10M_01 65 | ATCTTAGG IGVFSM0489RZXG,IGVFSM8174YDBO B12 073_NODJ_10M_01 66 | GCTATCTC IGVFSM7760MHIK C1 026_AJ_10F_05 67 | CATGTCTC IGVFSM7760MHIK C1 026_AJ_10F_05 68 | TAGTTTCC IGVFSM8587LUPL C2 029_AJ_10M_05 69 | TCATTGCA IGVFSM8587LUPL C2 029_AJ_10M_05 70 | TCCATTAT IGVFSM8501AGYE C3 028_AJ_10F_05 71 | ACACCTTT IGVFSM8501AGYE C3 028_AJ_10F_05 72 | AGGATTAA IGVFSM9889OUOI C4 031_AJ_10M_05 73 | AATTTCTC IGVFSM9889OUOI C4 031_AJ_10M_05 74 | AATCTTTC IGVFSM9122CTMU C5 030_AJ_10F_05 75 | ATTCATGG IGVFSM9122CTMU C5 030_AJ_10F_05 76 | GTCATATG IGVFSM8488GXLP C6 033_AJ_10M_05 77 | ACTTTACC IGVFSM8488GXLP C6 033_AJ_10M_05 78 | GTGCTTCC IGVFSM3749AQYK C7 032_AJ_10F_05 79 | CTTCTAAC IGVFSM3749AQYK C7 032_AJ_10F_05 80 | ATGTGTTG IGVFSM2286VGQO C8 035_AJ_10M_05 81 | CTATTTCA IGVFSM2286VGQO C8 035_AJ_10M_05 82 | CCATCTTG IGVFSM2617YKKQ,IGVFSM8677EQEG C9 026_AJ_10F_01 83 | TCTCATGC IGVFSM2617YKKQ,IGVFSM8677EQEG C9 026_AJ_10F_01 84 | CCATCTTG IGVFSM5417LNGC,IGVFSM6924RRKD C9 076_PWKJ_10F_01 85 | TCTCATGC IGVFSM5417LNGC,IGVFSM6924RRKD C9 076_PWKJ_10F_01 86 | TACTGTCT IGVFSM1458SAIZ,IGVFSM8548SQFG C10 029_AJ_10M_01 87 | ATCCTTAC IGVFSM1458SAIZ,IGVFSM8548SQFG C10 029_AJ_10M_01 88 | TACTGTCT IGVFSM4103LTZB,IGVFSM5500OUCV C10 077_PWKJ_10M_01 89 | ATCCTTAC IGVFSM4103LTZB,IGVFSM5500OUCV C10 077_PWKJ_10M_01 90 | TTCATCGC IGVFSM4796DKJO,IGVFSM4881USYE C11 028_AJ_10F_01 91 | TAAATATC IGVFSM4796DKJO,IGVFSM4881USYE C11 028_AJ_10F_01 92 | TTCATCGC IGVFSM2146SQAW,IGVFSM9111MIVH C11 078_PWKJ_10F_01 93 | TAAATATC IGVFSM2146SQAW,IGVFSM9111MIVH C11 078_PWKJ_10F_01 94 | ACTGTGGG IGVFSM3351WODP,IGVFSM6893IKIH C12 031_AJ_10M_01 95 | TTACCTGC IGVFSM3351WODP,IGVFSM6893IKIH C12 031_AJ_10M_01 96 | ACTGTGGG IGVFSM3536WDNR,IGVFSM3744QPBB C12 079_PWKJ_10M_01 97 | TTACCTGC IGVFSM3536WDNR,IGVFSM3744QPBB C12 079_PWKJ_10M_01 98 | TCTGTGCC IGVFSM8222BTFH D1 076_PWKJ_10F_05 99 | CACTTTCA IGVFSM8222BTFH D1 076_PWKJ_10F_05 100 | TCAATCTC IGVFSM6195ZDYB D2 077_PWKJ_10M_05 101 | CACCTTTA IGVFSM6195ZDYB D2 077_PWKJ_10M_05 102 | GTCCTCTG IGVFSM0598HJAL D3 078_PWKJ_10F_05 103 | CTGACTTC IGVFSM0598HJAL D3 078_PWKJ_10F_05 104 | TTACATTC IGVFSM7868PMHQ D4 079_PWKJ_10M_05 105 | CATTTGGA IGVFSM7868PMHQ D4 079_PWKJ_10M_05 106 | ATTCTGTC IGVFSM4205CGEZ D5 080_PWKJ_10F_05 107 | GCTCTACT IGVFSM4205CGEZ D5 080_PWKJ_10F_05 108 | TGTGTATG IGVFSM9316HSZQ D6 081_PWKJ_10M_05 109 | GTTACGTA IGVFSM9316HSZQ D6 081_PWKJ_10M_05 110 | TCCATTTG IGVFSM2116DCHR D7 044_129S1J_10F_05 111 | CCTGTTGC IGVFSM2116DCHR D7 044_129S1J_10F_05 112 | TTAGCTTC IGVFSM6420ZYPO D8 085_PWKJ_10M_05 113 | CTATCATC IGVFSM6420ZYPO D8 085_PWKJ_10M_05 114 | GTGCTTGA IGVFSM4955LORB,IGVFSM9545EZNW D9 030_AJ_10F_01 115 | GCTATCAT IGVFSM4955LORB,IGVFSM9545EZNW D9 030_AJ_10F_01 116 | GTGCTTGA IGVFSM0567BKYP,IGVFSM1552JBSI D9 080_PWKJ_10F_01 117 | GCTATCAT IGVFSM0567BKYP,IGVFSM1552JBSI D9 080_PWKJ_10F_01 118 | GTTTGTGA IGVFSM1755SWJI,IGVFSM2119ANJP D10 033_AJ_10M_01 119 | ACATTCAT IGVFSM1755SWJI,IGVFSM2119ANJP D10 033_AJ_10M_01 120 | GTTTGTGA IGVFSM6086KVUS,IGVFSM8490BJOU D10 081_PWKJ_10M_01 121 | ACATTCAT IGVFSM6086KVUS,IGVFSM8490BJOU D10 081_PWKJ_10M_01 122 | GAAATTAG IGVFSM3957TLDF,IGVFSM6828FNBA D11 032_AJ_10F_01 123 | TTCGCTAC IGVFSM3957TLDF,IGVFSM6828FNBA D11 032_AJ_10F_01 124 | GAAATTAG IGVFSM4249JBEE,IGVFSM7955ABKB D11 084_PWKJ_10F_01 125 | TTCGCTAC IGVFSM4249JBEE,IGVFSM7955ABKB D11 084_PWKJ_10F_01 126 | GCAAATTC IGVFSM1951AMWE,IGVFSM3012KPRJ D12 035_AJ_10M_01 127 | CATTCTAC IGVFSM1951AMWE,IGVFSM3012KPRJ D12 035_AJ_10M_01 128 | GCAAATTC IGVFSM3050OPDO,IGVFSM4510XDYL D12 085_PWKJ_10M_01 129 | CATTCTAC IGVFSM3050OPDO,IGVFSM4510XDYL D12 085_PWKJ_10M_01 130 | GAGGTTGA IGVFSM3021PVNM E1 036_129S1J_10F_05 131 | CACTTATC IGVFSM3021PVNM E1 036_129S1J_10F_05 132 | CCTGTCTG IGVFSM3344MCNS E2 037_129S1J_10M_05 133 | ATAAGCTC IGVFSM3344MCNS E2 037_129S1J_10M_05 134 | GTGGGTTC IGVFSM9049MUBB E3 038_129S1J_10F_05 135 | TCATCCTG IGVFSM9049MUBB E3 038_129S1J_10F_05 136 | TTTGCATC IGVFSM6336XNLQ E4 041_129S1J_10M_05 137 | CCTGGTAT IGVFSM6336XNLQ E4 041_129S1J_10M_05 138 | AGGTAATA IGVFSM7035ACUG E5 040_129S1J_10F_05 139 | TGGTATAC IGVFSM7035ACUG E5 040_129S1J_10F_05 140 | GTGCCTTC IGVFSM5467HYTI E6 043_129S1J_10M_05 141 | TTGGGAGA IGVFSM5467HYTI E6 043_129S1J_10M_05 142 | ATGTTTCC IGVFSM3421MHKE E7 084_PWKJ_10F_05 143 | ACTTCATC IGVFSM3421MHKE E7 084_PWKJ_10F_05 144 | CTTAATTC IGVFSM9876UKZX E8 045_129S1J_10M_05 145 | TCTCTAGC IGVFSM9876UKZX E8 045_129S1J_10M_05 146 | TCTGGCTC IGVFSM4167SEXH,IGVFSM9398YHXY E9 036_129S1J_10F_01 147 | ATGCCCTT IGVFSM4167SEXH,IGVFSM9398YHXY E9 036_129S1J_10F_01 148 | TCTGGCTC IGVFSM7092FDTP,IGVFSM9286SBAR E9 086_CASTJ_10F_01 149 | ATGCCCTT IGVFSM7092FDTP,IGVFSM9286SBAR E9 086_CASTJ_10F_01 150 | CATCATTT IGVFSM3753OVHM,IGVFSM9806TYXF E10 037_129S1J_10M_01 151 | CCCAATTT IGVFSM3753OVHM,IGVFSM9806TYXF E10 037_129S1J_10M_01 152 | CATCATTT IGVFSM4956HIAH,IGVFSM5457PTKY E10 087_CASTJ_10M_01 153 | CCCAATTT IGVFSM4956HIAH,IGVFSM5457PTKY E10 087_CASTJ_10M_01 154 | GTTGTCTC IGVFSM5458IIQG,IGVFSM9530NJWB E11 038_129S1J_10F_01 155 | ACTATATA IGVFSM5458IIQG,IGVFSM9530NJWB E11 038_129S1J_10F_01 156 | GTTGTCTC IGVFSM0690VJRZ,IGVFSM9111THIZ E11 088_CASTJ_10F_01 157 | ACTATATA IGVFSM0690VJRZ,IGVFSM9111THIZ E11 088_CASTJ_10F_01 158 | ATCTTCTG IGVFSM0340DRJV,IGVFSM4269MUAL E12 041_129S1J_10M_01 159 | CTCTATAC IGVFSM0340DRJV,IGVFSM4269MUAL E12 041_129S1J_10M_01 160 | ATCTTCTG IGVFSM6740OVAR,IGVFSM8458TCXX E12 089_CASTJ_10M_01 161 | CTCTATAC IGVFSM6740OVAR,IGVFSM8458TCXX E12 089_CASTJ_10M_01 162 | TGTTTGCC IGVFSM7228AIWD F1 086_CASTJ_10F_05 163 | CTGTCTCA IGVFSM7228AIWD F1 086_CASTJ_10F_05 164 | TTCTGTCA IGVFSM9408IVIR F2 087_CASTJ_10M_05 165 | GACCTTTC IGVFSM9408IVIR F2 087_CASTJ_10M_05 166 | ACGGACTC IGVFSM3996IQCS F3 088_CASTJ_10F_05 167 | GATTTGGC IGVFSM3996IQCS F3 088_CASTJ_10F_05 168 | TTTGGTCA IGVFSM0151EMWS F4 089_CASTJ_10M_05 169 | CGTCTAGG IGVFSM0151EMWS F4 089_CASTJ_10M_05 170 | TATCCGGG IGVFSM6880XYMR F5 090_CASTJ_10F_05 171 | TACTCGAA IGVFSM6880XYMR F5 090_CASTJ_10F_05 172 | TGTCATTC IGVFSM9848ACFP F6 091_CASTJ_10M_05 173 | CAGCCTTT IGVFSM9848ACFP F6 091_CASTJ_10M_05 174 | ATTCTCTG IGVFSM1855TZJL F7 094_CASTJ_10F_05 175 | CCTCATTA IGVFSM1855TZJL F7 094_CASTJ_10F_05 176 | TGGCTTCC IGVFSM8245FNTV F8 093_CASTJ_10M_05 177 | CTTATACC IGVFSM8245FNTV F8 093_CASTJ_10M_05 178 | TTGTTGCC IGVFSM6249RJQV,IGVFSM7479OZRI F9 040_129S1J_10F_01 179 | TCTATTAC IGVFSM6249RJQV,IGVFSM7479OZRI F9 040_129S1J_10F_01 180 | TTGTTGCC IGVFSM1264GFRJ,IGVFSM5214BQRA F9 090_CASTJ_10F_01 181 | TCTATTAC IGVFSM1264GFRJ,IGVFSM5214BQRA F9 090_CASTJ_10F_01 182 | GTCATCTC IGVFSM6782GARZ,IGVFSM8930SAOK F10 043_129S1J_10M_01 183 | CCTGCATT IGVFSM6782GARZ,IGVFSM8930SAOK F10 043_129S1J_10M_01 184 | GTCATCTC IGVFSM4321DFFH,IGVFSM8357WYSN F10 091_CASTJ_10M_01 185 | CCTGCATT IGVFSM4321DFFH,IGVFSM8357WYSN F10 091_CASTJ_10M_01 186 | TTGCTCAT IGVFSM0539MTAN,IGVFSM6738OHZO F11 044_129S1J_10F_01 187 | CAATCCTT IGVFSM0539MTAN,IGVFSM6738OHZO F11 044_129S1J_10F_01 188 | TTGCTCAT IGVFSM0021WQYA,IGVFSM1257AOMZ F11 094_CASTJ_10F_01 189 | CAATCCTT IGVFSM0021WQYA,IGVFSM1257AOMZ F11 094_CASTJ_10F_01 190 | CTGTCTGC IGVFSM1996CIIR,IGVFSM6742HLKN F12 045_129S1J_10M_01 191 | TTGTCTTA IGVFSM1996CIIR,IGVFSM6742HLKN F12 045_129S1J_10M_01 192 | CTGTCTGC IGVFSM1436ECIH,IGVFSM5017BJEE F12 093_CASTJ_10M_01 193 | TTGTCTTA IGVFSM1436ECIH,IGVFSM5017BJEE F12 093_CASTJ_10M_01 194 | TATATTCC IGVFSM6714CAWV G1 058_WSBJ_10F_05 195 | TCACTTTA IGVFSM6714CAWV G1 058_WSBJ_10F_05 196 | ATATTGGC IGVFSM6424UEBK G2 057_WSBJ_10M_05 197 | TGCTTGGG IGVFSM6424UEBK G2 057_WSBJ_10M_05 198 | GTGTCCTC IGVFSM0803WGCL G3 060_WSBJ_10F_05 199 | CGCTCATT IGVFSM0803WGCL G3 060_WSBJ_10F_05 200 | ATCTTCAT IGVFSM0434YXCE G4 059_WSBJ_10M_05 201 | GCCTCTAT IGVFSM0434YXCE G4 059_WSBJ_10M_05 202 | CGTGGTTG IGVFSM1705RPMT G5 062_WSBJ_10F_05 203 | GAGCACAA IGVFSM1705RPMT G5 062_WSBJ_10F_05 204 | TTGCATCC IGVFSM4873REQN G6 061_WSBJ_10M_05 205 | CTCTTAAC IGVFSM4873REQN G6 061_WSBJ_10M_05 206 | TCTTAATC IGVFSM3444WPKV G7 096_WSBJ_10F_05 207 | TCTAGGCT IGVFSM3444WPKV G7 096_WSBJ_10F_05 208 | TGCATTTC IGVFSM3622HQCN G8 063_WSBJ_10M_05 209 | AATTCTGC IGVFSM3622HQCN G8 063_WSBJ_10M_05 210 | GATGTTTC IGVFSM0966WWIZ,IGVFSM4130KIEV G9 058_WSBJ_10F_01 211 | CATTCTCA IGVFSM0966WWIZ,IGVFSM4130KIEV G9 058_WSBJ_10F_01 212 | GATGTTTC IGVFSM1078KTYU,IGVFSM8134HPUH G9 092_CASTJ_10F_01 213 | CATTCTCA IGVFSM1078KTYU,IGVFSM8134HPUH G9 092_CASTJ_10F_01 214 | ATCTTGTC IGVFSM4107ZNSE,IGVFSM6703AANL G10 047_NZOJ_10M_01 215 | ACTTGCCT IGVFSM4107ZNSE,IGVFSM6703AANL G10 047_NZOJ_10M_01 216 | ATCTTGTC IGVFSM7450WJIV,IGVFSM8498UCVA G10 057_WSBJ_10M_01 217 | ACTTGCCT IGVFSM7450WJIV,IGVFSM8498UCVA G10 057_WSBJ_10M_01 218 | TCATATTC IGVFSM0298LFOQ,IGVFSM8754ELWG G11 048_NZOJ_10F_01 219 | ATCATTGC IGVFSM0298LFOQ,IGVFSM8754ELWG G11 048_NZOJ_10F_01 220 | TCATATTC IGVFSM0752ZRMG,IGVFSM3371TFMC G11 060_WSBJ_10F_01 221 | ATCATTGC IGVFSM0752ZRMG,IGVFSM3371TFMC G11 060_WSBJ_10F_01 222 | TGGCCTCT IGVFSM2572HXXE,IGVFSM9197PRMM G12 049_NZOJ_10M_01 223 | GTTCAACA IGVFSM2572HXXE,IGVFSM9197PRMM G12 049_NZOJ_10M_01 224 | TGGCCTCT IGVFSM2287EHGA,IGVFSM9356QKBM G12 059_WSBJ_10M_01 225 | GTTCAACA IGVFSM2287EHGA,IGVFSM9356QKBM G12 059_WSBJ_10M_01 226 | CGTTGTCT IGVFSM9090ZNRS H1 046_NZOJ_10F_05 227 | CCATTTGC IGVFSM9090ZNRS H1 046_NZOJ_10F_05 228 | TCTTGTCA IGVFSM4130EMOU H2 047_NZOJ_10M_05 229 | GACTTTGC IGVFSM4130EMOU H2 047_NZOJ_10M_05 230 | TATTCCTG IGVFSM1384SGZS H3 048_NZOJ_10F_05 231 | ATTGGCTC IGVFSM1384SGZS H3 048_NZOJ_10F_05 232 | TCCATGTC IGVFSM6644MYFA H4 049_NZOJ_10M_05 233 | GTGCTAGC IGVFSM6644MYFA H4 049_NZOJ_10M_05 234 | TTGTCATC IGVFSM9429JZJC H5 050_NZOJ_10F_05 235 | CTTTCAAC IGVFSM9429JZJC H5 050_NZOJ_10F_05 236 | ATTTCCTG IGVFSM1239ETDH H6 051_NZOJ_10M_05 237 | ACTATTGC IGVFSM1239ETDH H6 051_NZOJ_10M_05 238 | GTGTCTCC IGVFSM3658ESYZ H7 052_NZOJ_10F_05 239 | ACTGGCTT IGVFSM3658ESYZ H7 052_NZOJ_10F_05 240 | GTGTGTGT IGVFSM7821JHFX H8 053_NZOJ_10M_05 241 | ATTAGGCT IGVFSM7821JHFX H8 053_NZOJ_10M_05 242 | TATGCTTC IGVFSM2120LYVH,IGVFSM8205AVFV H9 050_NZOJ_10F_01 243 | GCCTTTCA IGVFSM2120LYVH,IGVFSM8205AVFV H9 050_NZOJ_10F_01 244 | TATGCTTC IGVFSM2047VYYJ,IGVFSM7560RVGB H9 062_WSBJ_10F_01 245 | GCCTTTCA IGVFSM2047VYYJ,IGVFSM7560RVGB H9 062_WSBJ_10F_01 246 | ATGGTGTT IGVFSM3556PAEN,IGVFSM9711JMMI H10 051_NZOJ_10M_01 247 | ATTCTAGG IGVFSM3556PAEN,IGVFSM9711JMMI H10 051_NZOJ_10M_01 248 | ATGGTGTT IGVFSM3364FXFB,IGVFSM4632PCNC H10 061_WSBJ_10M_01 249 | ATTCTAGG IGVFSM3364FXFB,IGVFSM4632PCNC H10 061_WSBJ_10M_01 250 | GAATAATG IGVFSM5374RXFR,IGVFSM9813BNZU H11 052_NZOJ_10F_01 251 | CCTTACAT IGVFSM5374RXFR,IGVFSM9813BNZU H11 052_NZOJ_10F_01 252 | GAATAATG IGVFSM1348QFIK,IGVFSM6620ZEBK H11 096_WSBJ_10F_01 253 | CCTTACAT IGVFSM1348QFIK,IGVFSM6620ZEBK H11 096_WSBJ_10F_01 254 | CCTCTGTG IGVFSM3167TBKE,IGVFSM9817PYLC H12 053_NZOJ_10M_01 255 | ACATTTGG IGVFSM3167TBKE,IGVFSM9817PYLC H12 053_NZOJ_10M_01 256 | CCTCTGTG IGVFSM7877XJMN,IGVFSM9074ZTED H12 063_WSBJ_10M_01 257 | ACATTTGG IGVFSM7877XJMN,IGVFSM9074ZTED H12 063_WSBJ_10M_01 258 | -------------------------------------------------------------------------------- /configs/IGVF_008B_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM4567NUXK A1 016_B6J_10F_10 3 | CATTCCTA IGVFSM4567NUXK A1 016_B6J_10F_10 4 | CATCATCC IGVFSM3537SUZG A1 016_B6J_10F_11 5 | CATTCCTA IGVFSM3537SUZG A1 016_B6J_10F_11 6 | CTGCTTTG IGVFSM6618MHBV A2 017_B6J_10M_10 7 | CTTCATCA IGVFSM6618MHBV A2 017_B6J_10M_10 8 | CTGCTTTG IGVFSM1349YMMU A2 017_B6J_10M_11 9 | CTTCATCA IGVFSM1349YMMU A2 017_B6J_10M_11 10 | CTAAGGGA IGVFSM7587IQZO A3 018_B6J_10F_10 11 | CCTATATC IGVFSM7587IQZO A3 018_B6J_10F_10 12 | CTAAGGGA IGVFSM2910IGST A3 018_B6J_10F_11 13 | CCTATATC IGVFSM2910IGST A3 018_B6J_10F_11 14 | GCTTATAG IGVFSM4552FSZN A4 019_B6J_10M_10 15 | ACATTTAC IGVFSM4552FSZN A4 019_B6J_10M_10 16 | GCTTATAG IGVFSM4635AIZP A4 019_B6J_10M_11 17 | ACATTTAC IGVFSM4635AIZP A4 019_B6J_10M_11 18 | TCTGATCC IGVFSM6410RGFM A5 020_B6J_10F_10 19 | ACTTAGCT IGVFSM6410RGFM A5 020_B6J_10F_10 20 | TCTGATCC IGVFSM8699AZSF A5 020_B6J_10F_11 21 | ACTTAGCT IGVFSM8699AZSF A5 020_B6J_10F_11 22 | TCTCTTGG IGVFSM8837MYHY A6 021_B6J_10M_10 23 | CCAATTCT IGVFSM8837MYHY A6 021_B6J_10M_10 24 | TCTCTTGG IGVFSM5614XQUG A6 021_B6J_10M_11 25 | CCAATTCT IGVFSM5614XQUG A6 021_B6J_10M_11 26 | CAATTTCC IGVFSM1095OHOH A7 024_B6J_10F_10 27 | GCCTATCT IGVFSM1095OHOH A7 024_B6J_10F_10 28 | CAATTTCC IGVFSM4730CIUG A7 024_B6J_10F_11 29 | GCCTATCT IGVFSM4730CIUG A7 024_B6J_10F_11 30 | AGTCTCTT IGVFSM3397IFNI A8 025_B6J_10M_10 31 | ATGCTGCT IGVFSM3397IFNI A8 025_B6J_10M_10 32 | AGTCTCTT IGVFSM4481IPHX A8 025_B6J_10M_11 33 | ATGCTGCT IGVFSM4481IPHX A8 025_B6J_10M_11 34 | TGCTGCTC IGVFSM9731QOVH A9 016_B6J_10F_08 35 | CATTTACA IGVFSM9731QOVH A9 016_B6J_10F_08 36 | TGCTGCTC IGVFSM1981FBYZ A9 066_NODJ_10F_08 37 | CATTTACA IGVFSM1981FBYZ A9 066_NODJ_10F_08 38 | GTATTTCC IGVFSM7981FEKQ A10 017_B6J_10M_08 39 | ACTCGTAA IGVFSM7981FEKQ A10 017_B6J_10M_08 40 | GTATTTCC IGVFSM0149TNQV A10 067_NODJ_10M_08 41 | ACTCGTAA IGVFSM0149TNQV A10 067_NODJ_10M_08 42 | TTCCTGTG IGVFSM7273NNBM A11 018_B6J_10F_08 43 | CCTTTGCA IGVFSM7273NNBM A11 018_B6J_10F_08 44 | TTCCTGTG IGVFSM2286NVNW A11 068_NODJ_10F_08 45 | CCTTTGCA IGVFSM2286NVNW A11 068_NODJ_10F_08 46 | GCTGCTTC IGVFSM2795NYTC A12 019_B6J_10M_08 47 | ACTCCTGC IGVFSM2795NYTC A12 019_B6J_10M_08 48 | GCTGCTTC IGVFSM0256YAXR A12 069_NODJ_10M_08 49 | ACTCCTGC IGVFSM0256YAXR A12 069_NODJ_10M_08 50 | TATGTGTC IGVFSM9963SJEX B1 066_NODJ_10F_10 51 | ATTTGGCA IGVFSM9963SJEX B1 066_NODJ_10F_10 52 | TATGTGTC IGVFSM3417ZEGZ B1 066_NODJ_10F_11 53 | ATTTGGCA IGVFSM3417ZEGZ B1 066_NODJ_10F_11 54 | CAATTCTC IGVFSM8361NBRE B2 067_NODJ_10M_10 55 | TTATTCTG IGVFSM8361NBRE B2 067_NODJ_10M_10 56 | CAATTCTC IGVFSM5322PFJO B2 067_NODJ_10M_11 57 | TTATTCTG IGVFSM5322PFJO B2 067_NODJ_10M_11 58 | TGGTCTCC IGVFSM5649EBMW B3 068_NODJ_10F_10 59 | TCATGCTC IGVFSM5649EBMW B3 068_NODJ_10F_10 60 | TGGTCTCC IGVFSM3199IWJM B3 068_NODJ_10F_11 61 | TCATGCTC IGVFSM3199IWJM B3 068_NODJ_10F_11 62 | GCTCTTTA IGVFSM0379DQEB B4 069_NODJ_10M_10 63 | CATACTTC IGVFSM0379DQEB B4 069_NODJ_10M_10 64 | GCTCTTTA IGVFSM5988JHKG B4 069_NODJ_10M_11 65 | CATACTTC IGVFSM5988JHKG B4 069_NODJ_10M_11 66 | GCTGCATG IGVFSM6896ZGQR B5 070_NODJ_10F_10 67 | CCGTTCTA IGVFSM6896ZGQR B5 070_NODJ_10F_10 68 | GCTGCATG IGVFSM7472UIHU B5 070_NODJ_10F_11 69 | CCGTTCTA IGVFSM7472UIHU B5 070_NODJ_10F_11 70 | ACTCATTT IGVFSM2896HLSZ B6 071_NODJ_10M_10 71 | GCTTCATA IGVFSM2896HLSZ B6 071_NODJ_10M_10 72 | ACTCATTT IGVFSM3736YYMT B6 071_NODJ_10M_11 73 | GCTTCATA IGVFSM3736YYMT B6 071_NODJ_10M_11 74 | AGTCTTGG IGVFSM0625BIBT B7 072_NODJ_10F_10 75 | CTCTGTGC IGVFSM0625BIBT B7 072_NODJ_10F_10 76 | AGTCTTGG IGVFSM7300VPTD B7 072_NODJ_10F_11 77 | CTCTGTGC IGVFSM7300VPTD B7 072_NODJ_10F_11 78 | GGTTCTTC IGVFSM4303UBDW B8 073_NODJ_10M_10 79 | CCCTTATA IGVFSM4303UBDW B8 073_NODJ_10M_10 80 | GGTTCTTC IGVFSM8768SXWV B8 073_NODJ_10M_11 81 | CCCTTATA IGVFSM8768SXWV B8 073_NODJ_10M_11 82 | TCATGTTG IGVFSM2926ETSH B9 020_B6J_10F_08 83 | ACTGCTCT IGVFSM2926ETSH B9 020_B6J_10F_08 84 | TCATGTTG IGVFSM6603NGXT B9 070_NODJ_10F_08 85 | ACTGCTCT IGVFSM6603NGXT B9 070_NODJ_10F_08 86 | ATTTTGCC IGVFSM4409GRZD B10 021_B6J_10M_08 87 | CTCTAATC IGVFSM4409GRZD B10 021_B6J_10M_08 88 | ATTTTGCC IGVFSM2251OZKQ B10 071_NODJ_10M_08 89 | CTCTAATC IGVFSM2251OZKQ B10 071_NODJ_10M_08 90 | CTTCTGTA IGVFSM6796IKTY B11 024_B6J_10F_08 91 | ACCCTTGC IGVFSM6796IKTY B11 024_B6J_10F_08 92 | CTTCTGTA IGVFSM0170ECBA B11 072_NODJ_10F_08 93 | ACCCTTGC IGVFSM0170ECBA B11 072_NODJ_10F_08 94 | GTCCATCT IGVFSM4127LBLM B12 025_B6J_10M_08 95 | ATCTTAGG IGVFSM4127LBLM B12 025_B6J_10M_08 96 | GTCCATCT IGVFSM5573LEDH B12 073_NODJ_10M_08 97 | ATCTTAGG IGVFSM5573LEDH B12 073_NODJ_10M_08 98 | GCTATCTC IGVFSM7508KQHS C1 026_AJ_10F_10 99 | CATGTCTC IGVFSM7508KQHS C1 026_AJ_10F_10 100 | GCTATCTC IGVFSM9463TXUH C1 026_AJ_10F_11 101 | CATGTCTC IGVFSM9463TXUH C1 026_AJ_10F_11 102 | TAGTTTCC IGVFSM6129LTHE C2 029_AJ_10M_10 103 | TCATTGCA IGVFSM6129LTHE C2 029_AJ_10M_10 104 | TAGTTTCC IGVFSM9563RZBJ C2 029_AJ_10M_11 105 | TCATTGCA IGVFSM9563RZBJ C2 029_AJ_10M_11 106 | TCCATTAT IGVFSM2372DYWD C3 028_AJ_10F_10 107 | ACACCTTT IGVFSM2372DYWD C3 028_AJ_10F_10 108 | TCCATTAT IGVFSM9366IMCS C3 028_AJ_10F_11 109 | ACACCTTT IGVFSM9366IMCS C3 028_AJ_10F_11 110 | AGGATTAA IGVFSM5371TLXX C4 031_AJ_10M_10 111 | AATTTCTC IGVFSM5371TLXX C4 031_AJ_10M_10 112 | AGGATTAA IGVFSM5117TLYJ C4 031_AJ_10M_11 113 | AATTTCTC IGVFSM5117TLYJ C4 031_AJ_10M_11 114 | AATCTTTC IGVFSM6905VGKP C5 030_AJ_10F_10 115 | ATTCATGG IGVFSM6905VGKP C5 030_AJ_10F_10 116 | AATCTTTC IGVFSM1408BMPX C5 030_AJ_10F_11 117 | ATTCATGG IGVFSM1408BMPX C5 030_AJ_10F_11 118 | GTCATATG IGVFSM1633EQRW C6 033_AJ_10M_10 119 | ACTTTACC IGVFSM1633EQRW C6 033_AJ_10M_10 120 | GTCATATG IGVFSM0075HJSS C6 033_AJ_10M_11 121 | ACTTTACC IGVFSM0075HJSS C6 033_AJ_10M_11 122 | GTGCTTCC IGVFSM1911LHOP C7 032_AJ_10F_10 123 | CTTCTAAC IGVFSM1911LHOP C7 032_AJ_10F_10 124 | GTGCTTCC IGVFSM2604ZWZC C7 032_AJ_10F_11 125 | CTTCTAAC IGVFSM2604ZWZC C7 032_AJ_10F_11 126 | ATGTGTTG IGVFSM2230WLPO C8 035_AJ_10M_10 127 | CTATTTCA IGVFSM2230WLPO C8 035_AJ_10M_10 128 | ATGTGTTG IGVFSM7820FOJS C8 035_AJ_10M_11 129 | CTATTTCA IGVFSM7820FOJS C8 035_AJ_10M_11 130 | CCATCTTG IGVFSM5489EQDV C9 026_AJ_10F_08 131 | TCTCATGC IGVFSM5489EQDV C9 026_AJ_10F_08 132 | CCATCTTG IGVFSM5120VDBH C9 076_PWKJ_10F_08 133 | TCTCATGC IGVFSM5120VDBH C9 076_PWKJ_10F_08 134 | TACTGTCT IGVFSM9075IJZC C10 029_AJ_10M_08 135 | ATCCTTAC IGVFSM9075IJZC C10 029_AJ_10M_08 136 | TACTGTCT IGVFSM2744HFBR C10 077_PWKJ_10M_08 137 | ATCCTTAC IGVFSM2744HFBR C10 077_PWKJ_10M_08 138 | TTCATCGC IGVFSM6339UEAO C11 028_AJ_10F_08 139 | TAAATATC IGVFSM6339UEAO C11 028_AJ_10F_08 140 | TTCATCGC IGVFSM9958NNHY C11 078_PWKJ_10F_08 141 | TAAATATC IGVFSM9958NNHY C11 078_PWKJ_10F_08 142 | ACTGTGGG IGVFSM4824RRCE C12 031_AJ_10M_08 143 | TTACCTGC IGVFSM4824RRCE C12 031_AJ_10M_08 144 | ACTGTGGG IGVFSM0701NELT C12 079_PWKJ_10M_08 145 | TTACCTGC IGVFSM0701NELT C12 079_PWKJ_10M_08 146 | TCTGTGCC IGVFSM3184ILFA D1 076_PWKJ_10F_10 147 | CACTTTCA IGVFSM3184ILFA D1 076_PWKJ_10F_10 148 | TCTGTGCC IGVFSM0096BMWC D1 076_PWKJ_10F_11 149 | CACTTTCA IGVFSM0096BMWC D1 076_PWKJ_10F_11 150 | TCAATCTC IGVFSM4307KCOE D2 077_PWKJ_10M_10 151 | CACCTTTA IGVFSM4307KCOE D2 077_PWKJ_10M_10 152 | TCAATCTC IGVFSM5586TLOK D2 077_PWKJ_10M_11 153 | CACCTTTA IGVFSM5586TLOK D2 077_PWKJ_10M_11 154 | GTCCTCTG IGVFSM5409UMED D3 078_PWKJ_10F_10 155 | CTGACTTC IGVFSM5409UMED D3 078_PWKJ_10F_10 156 | GTCCTCTG IGVFSM1096FNGC D3 078_PWKJ_10F_11 157 | CTGACTTC IGVFSM1096FNGC D3 078_PWKJ_10F_11 158 | TTACATTC IGVFSM3239STTL D4 079_PWKJ_10M_10 159 | CATTTGGA IGVFSM3239STTL D4 079_PWKJ_10M_10 160 | TTACATTC IGVFSM2227UKRP D4 079_PWKJ_10M_11 161 | CATTTGGA IGVFSM2227UKRP D4 079_PWKJ_10M_11 162 | ATTCTGTC IGVFSM2642TMHC D5 080_PWKJ_10F_10 163 | GCTCTACT IGVFSM2642TMHC D5 080_PWKJ_10F_10 164 | ATTCTGTC IGVFSM6638YNDH D5 080_PWKJ_10F_11 165 | GCTCTACT IGVFSM6638YNDH D5 080_PWKJ_10F_11 166 | TGTGTATG IGVFSM3142HYPK D6 081_PWKJ_10M_10 167 | GTTACGTA IGVFSM3142HYPK D6 081_PWKJ_10M_10 168 | TGTGTATG IGVFSM1277GJRQ D6 081_PWKJ_10M_11 169 | GTTACGTA IGVFSM1277GJRQ D6 081_PWKJ_10M_11 170 | TCCATTTG IGVFSM6801NQEI D7 084_PWKJ_10F_10 171 | CCTGTTGC IGVFSM6801NQEI D7 084_PWKJ_10F_10 172 | TCCATTTG IGVFSM9469AVQG D7 084_PWKJ_10F_11 173 | CCTGTTGC IGVFSM9469AVQG D7 084_PWKJ_10F_11 174 | TTAGCTTC IGVFSM5592JXHF D8 085_PWKJ_10M_10 175 | CTATCATC IGVFSM5592JXHF D8 085_PWKJ_10M_10 176 | TTAGCTTC IGVFSM1980ATRP D8 085_PWKJ_10M_11 177 | CTATCATC IGVFSM1980ATRP D8 085_PWKJ_10M_11 178 | GTGCTTGA IGVFSM7056LBHR D9 030_AJ_10F_08 179 | GCTATCAT IGVFSM7056LBHR D9 030_AJ_10F_08 180 | GTGCTTGA IGVFSM1448KEUX D9 080_PWKJ_10F_08 181 | GCTATCAT IGVFSM1448KEUX D9 080_PWKJ_10F_08 182 | GTTTGTGA IGVFSM6013ZWZO D10 033_AJ_10M_08 183 | ACATTCAT IGVFSM6013ZWZO D10 033_AJ_10M_08 184 | GTTTGTGA IGVFSM8451AOOU D10 081_PWKJ_10M_08 185 | ACATTCAT IGVFSM8451AOOU D10 081_PWKJ_10M_08 186 | GAAATTAG IGVFSM8570TOBS D11 032_AJ_10F_08 187 | TTCGCTAC IGVFSM8570TOBS D11 032_AJ_10F_08 188 | GAAATTAG IGVFSM4227UNYC D11 084_PWKJ_10F_08 189 | TTCGCTAC IGVFSM4227UNYC D11 084_PWKJ_10F_08 190 | GCAAATTC IGVFSM4324XCGU D12 035_AJ_10M_08 191 | CATTCTAC IGVFSM4324XCGU D12 035_AJ_10M_08 192 | GCAAATTC IGVFSM1696GVKP D12 085_PWKJ_10M_08 193 | CATTCTAC IGVFSM1696GVKP D12 085_PWKJ_10M_08 194 | GAGGTTGA IGVFSM6816QWSB E1 036_129S1J_10F_10 195 | CACTTATC IGVFSM6816QWSB E1 036_129S1J_10F_10 196 | GAGGTTGA IGVFSM8822PZTL E1 036_129S1J_10F_11 197 | CACTTATC IGVFSM8822PZTL E1 036_129S1J_10F_11 198 | CCTGTCTG IGVFSM1094VAAI E2 037_129S1J_10M_10 199 | ATAAGCTC IGVFSM1094VAAI E2 037_129S1J_10M_10 200 | CCTGTCTG IGVFSM9038UIJU E2 037_129S1J_10M_11 201 | ATAAGCTC IGVFSM9038UIJU E2 037_129S1J_10M_11 202 | GTGGGTTC IGVFSM2570ENQI E3 038_129S1J_10F_10 203 | TCATCCTG IGVFSM2570ENQI E3 038_129S1J_10F_10 204 | GTGGGTTC IGVFSM1263AYLV E3 038_129S1J_10F_11 205 | TCATCCTG IGVFSM1263AYLV E3 038_129S1J_10F_11 206 | TTTGCATC IGVFSM8496DJXG E4 041_129S1J_10M_10 207 | CCTGGTAT IGVFSM8496DJXG E4 041_129S1J_10M_10 208 | TTTGCATC IGVFSM9236NDAG E4 041_129S1J_10M_11 209 | CCTGGTAT IGVFSM9236NDAG E4 041_129S1J_10M_11 210 | AGGTAATA IGVFSM7330MCOB E5 040_129S1J_10F_10 211 | TGGTATAC IGVFSM7330MCOB E5 040_129S1J_10F_10 212 | AGGTAATA IGVFSM9813UIKP E5 040_129S1J_10F_11 213 | TGGTATAC IGVFSM9813UIKP E5 040_129S1J_10F_11 214 | GTGCCTTC IGVFSM6313PLBW E6 043_129S1J_10M_10 215 | TTGGGAGA IGVFSM6313PLBW E6 043_129S1J_10M_10 216 | GTGCCTTC IGVFSM9650VFSK E6 043_129S1J_10M_11 217 | TTGGGAGA IGVFSM9650VFSK E6 043_129S1J_10M_11 218 | ATGTTTCC IGVFSM4841JIOO E7 044_129S1J_10F_10 219 | ACTTCATC IGVFSM4841JIOO E7 044_129S1J_10F_10 220 | ATGTTTCC IGVFSM5851CIQU E7 044_129S1J_10F_11 221 | ACTTCATC IGVFSM5851CIQU E7 044_129S1J_10F_11 222 | CTTAATTC IGVFSM7262NIVF E8 045_129S1J_10M_10 223 | TCTCTAGC IGVFSM7262NIVF E8 045_129S1J_10M_10 224 | CTTAATTC IGVFSM0998LUIZ E8 045_129S1J_10M_11 225 | TCTCTAGC IGVFSM0998LUIZ E8 045_129S1J_10M_11 226 | TCTGGCTC IGVFSM1632QLUR E9 036_129S1J_10F_08 227 | ATGCCCTT IGVFSM1632QLUR E9 036_129S1J_10F_08 228 | TCTGGCTC IGVFSM2352QEZL E9 086_CASTJ_10F_08 229 | ATGCCCTT IGVFSM2352QEZL E9 086_CASTJ_10F_08 230 | CATCATTT IGVFSM9668NECE E10 037_129S1J_10M_08 231 | CCCAATTT IGVFSM9668NECE E10 037_129S1J_10M_08 232 | CATCATTT IGVFSM4914MZNP E10 087_CASTJ_10M_08 233 | CCCAATTT IGVFSM4914MZNP E10 087_CASTJ_10M_08 234 | GTTGTCTC IGVFSM0340EAYH E11 038_129S1J_10F_08 235 | ACTATATA IGVFSM0340EAYH E11 038_129S1J_10F_08 236 | GTTGTCTC IGVFSM2528JPFP E11 088_CASTJ_10F_08 237 | ACTATATA IGVFSM2528JPFP E11 088_CASTJ_10F_08 238 | ATCTTCTG IGVFSM4755QPGT E12 041_129S1J_10M_08 239 | CTCTATAC IGVFSM4755QPGT E12 041_129S1J_10M_08 240 | ATCTTCTG IGVFSM0740TEWR E12 089_CASTJ_10M_08 241 | CTCTATAC IGVFSM0740TEWR E12 089_CASTJ_10M_08 242 | TGTTTGCC IGVFSM7969ZAUZ F1 086_CASTJ_10F_10 243 | CTGTCTCA IGVFSM7969ZAUZ F1 086_CASTJ_10F_10 244 | TGTTTGCC IGVFSM8330OVCV F1 086_CASTJ_10F_11 245 | CTGTCTCA IGVFSM8330OVCV F1 086_CASTJ_10F_11 246 | TTCTGTCA IGVFSM3300FHLI F2 087_CASTJ_10M_10 247 | GACCTTTC IGVFSM3300FHLI F2 087_CASTJ_10M_10 248 | TTCTGTCA IGVFSM4100ZICM F2 087_CASTJ_10M_11 249 | GACCTTTC IGVFSM4100ZICM F2 087_CASTJ_10M_11 250 | ACGGACTC IGVFSM0900XHGX F3 088_CASTJ_10F_10 251 | GATTTGGC IGVFSM0900XHGX F3 088_CASTJ_10F_10 252 | ACGGACTC IGVFSM2098KNMX F3 088_CASTJ_10F_11 253 | GATTTGGC IGVFSM2098KNMX F3 088_CASTJ_10F_11 254 | TTTGGTCA IGVFSM7381JEDM F4 089_CASTJ_10M_10 255 | CGTCTAGG IGVFSM7381JEDM F4 089_CASTJ_10M_10 256 | TTTGGTCA IGVFSM9723WBIN F4 089_CASTJ_10M_11 257 | CGTCTAGG IGVFSM9723WBIN F4 089_CASTJ_10M_11 258 | TATCCGGG IGVFSM5920YOJY F5 090_CASTJ_10F_10 259 | TACTCGAA IGVFSM5920YOJY F5 090_CASTJ_10F_10 260 | TATCCGGG IGVFSM1103DUUT F5 090_CASTJ_10F_11 261 | TACTCGAA IGVFSM1103DUUT F5 090_CASTJ_10F_11 262 | TGTCATTC IGVFSM0628FIYW F6 091_CASTJ_10M_10 263 | CAGCCTTT IGVFSM0628FIYW F6 091_CASTJ_10M_10 264 | TGTCATTC IGVFSM6763UWGN F6 091_CASTJ_10M_11 265 | CAGCCTTT IGVFSM6763UWGN F6 091_CASTJ_10M_11 266 | ATTCTCTG IGVFSM6711SYYK F7 094_CASTJ_10F_10 267 | CCTCATTA IGVFSM6711SYYK F7 094_CASTJ_10F_10 268 | ATTCTCTG IGVFSM8588WXUX F7 094_CASTJ_10F_11 269 | CCTCATTA IGVFSM8588WXUX F7 094_CASTJ_10F_11 270 | TGGCTTCC IGVFSM9677NTDJ F8 093_CASTJ_10M_10 271 | CTTATACC IGVFSM9677NTDJ F8 093_CASTJ_10M_10 272 | TGGCTTCC IGVFSM7066GBZS F8 093_CASTJ_10M_11 273 | CTTATACC IGVFSM7066GBZS F8 093_CASTJ_10M_11 274 | TTGTTGCC IGVFSM9964SESF F9 040_129S1J_10F_08 275 | TCTATTAC IGVFSM9964SESF F9 040_129S1J_10F_08 276 | TTGTTGCC IGVFSM8717VBUZ F9 090_CASTJ_10F_08 277 | TCTATTAC IGVFSM8717VBUZ F9 090_CASTJ_10F_08 278 | GTCATCTC IGVFSM4576HVJC F10 043_129S1J_10M_08 279 | CCTGCATT IGVFSM4576HVJC F10 043_129S1J_10M_08 280 | GTCATCTC IGVFSM5442GAOY F10 091_CASTJ_10M_08 281 | CCTGCATT IGVFSM5442GAOY F10 091_CASTJ_10M_08 282 | TTGCTCAT IGVFSM3033SSIU F11 044_129S1J_10F_08 283 | CAATCCTT IGVFSM3033SSIU F11 044_129S1J_10F_08 284 | TTGCTCAT IGVFSM4807XVYB F11 094_CASTJ_10F_08 285 | CAATCCTT IGVFSM4807XVYB F11 094_CASTJ_10F_08 286 | CTGTCTGC IGVFSM3513BNRI F12 045_129S1J_10M_08 287 | TTGTCTTA IGVFSM3513BNRI F12 045_129S1J_10M_08 288 | CTGTCTGC IGVFSM5275FTRH F12 095_CASTJ_10M_08 289 | TTGTCTTA IGVFSM5275FTRH F12 095_CASTJ_10M_08 290 | TATATTCC IGVFSM8653IGLV G1 058_WSBJ_10F_10 291 | TCACTTTA IGVFSM8653IGLV G1 058_WSBJ_10F_10 292 | TATATTCC IGVFSM7260RGBF G1 058_WSBJ_10F_11 293 | TCACTTTA IGVFSM7260RGBF G1 058_WSBJ_10F_11 294 | ATATTGGC IGVFSM6049JASP G2 057_WSBJ_10M_10 295 | TGCTTGGG IGVFSM6049JASP G2 057_WSBJ_10M_10 296 | ATATTGGC IGVFSM8555WNHX G2 057_WSBJ_10M_11 297 | TGCTTGGG IGVFSM8555WNHX G2 057_WSBJ_10M_11 298 | GTGTCCTC IGVFSM1827LDDT G3 060_WSBJ_10F_10 299 | CGCTCATT IGVFSM1827LDDT G3 060_WSBJ_10F_10 300 | GTGTCCTC IGVFSM5070ERGT G3 060_WSBJ_10F_11 301 | CGCTCATT IGVFSM5070ERGT G3 060_WSBJ_10F_11 302 | ATCTTCAT IGVFSM0997ZFEX G4 059_WSBJ_10M_10 303 | GCCTCTAT IGVFSM0997ZFEX G4 059_WSBJ_10M_10 304 | ATCTTCAT IGVFSM6693YSWV G4 059_WSBJ_10M_11 305 | GCCTCTAT IGVFSM6693YSWV G4 059_WSBJ_10M_11 306 | CGTGGTTG IGVFSM7348XFYJ G5 062_WSBJ_10F_10 307 | GAGCACAA IGVFSM7348XFYJ G5 062_WSBJ_10F_10 308 | CGTGGTTG IGVFSM0359CZGZ G5 062_WSBJ_10F_11 309 | GAGCACAA IGVFSM0359CZGZ G5 062_WSBJ_10F_11 310 | TTGCATCC IGVFSM4977BSZT G6 061_WSBJ_10M_10 311 | CTCTTAAC IGVFSM4977BSZT G6 061_WSBJ_10M_10 312 | TTGCATCC IGVFSM1160IHPD G6 061_WSBJ_10M_11 313 | CTCTTAAC IGVFSM1160IHPD G6 061_WSBJ_10M_11 314 | TCTTAATC IGVFSM2781SEWP G7 096_WSBJ_10F_10 315 | TCTAGGCT IGVFSM2781SEWP G7 096_WSBJ_10F_10 316 | TCTTAATC IGVFSM0153ZUFQ G7 096_WSBJ_10F_11 317 | TCTAGGCT IGVFSM0153ZUFQ G7 096_WSBJ_10F_11 318 | TGCATTTC IGVFSM4132OPDD G8 063_WSBJ_10M_10 319 | AATTCTGC IGVFSM4132OPDD G8 063_WSBJ_10M_10 320 | TGCATTTC IGVFSM9229AVFG G8 063_WSBJ_10M_11 321 | AATTCTGC IGVFSM9229AVFG G8 063_WSBJ_10M_11 322 | GATGTTTC IGVFSM9456XQYT G9 046_NZOJ_10F_08 323 | CATTCTCA IGVFSM9456XQYT G9 046_NZOJ_10F_08 324 | GATGTTTC IGVFSM0232VKZB G9 058_WSBJ_10F_08 325 | CATTCTCA IGVFSM0232VKZB G9 058_WSBJ_10F_08 326 | ATCTTGTC IGVFSM8242IPDC G10 047_NZOJ_10M_08 327 | ACTTGCCT IGVFSM8242IPDC G10 047_NZOJ_10M_08 328 | ATCTTGTC IGVFSM9417BLQR G10 057_WSBJ_10M_08 329 | ACTTGCCT IGVFSM9417BLQR G10 057_WSBJ_10M_08 330 | TCATATTC IGVFSM4848LHPG G11 048_NZOJ_10F_08 331 | ATCATTGC IGVFSM4848LHPG G11 048_NZOJ_10F_08 332 | TCATATTC IGVFSM0760BMNA G11 060_WSBJ_10F_08 333 | ATCATTGC IGVFSM0760BMNA G11 060_WSBJ_10F_08 334 | TGGCCTCT IGVFSM3199ZHGC G12 049_NZOJ_10M_08 335 | GTTCAACA IGVFSM3199ZHGC G12 049_NZOJ_10M_08 336 | TGGCCTCT IGVFSM4075DZPE G12 059_WSBJ_10M_08 337 | GTTCAACA IGVFSM4075DZPE G12 059_WSBJ_10M_08 338 | CGTTGTCT IGVFSM6124VCIY H1 046_NZOJ_10F_10 339 | CCATTTGC IGVFSM6124VCIY H1 046_NZOJ_10F_10 340 | CGTTGTCT IGVFSM8844CIBF H1 046_NZOJ_10F_11 341 | CCATTTGC IGVFSM8844CIBF H1 046_NZOJ_10F_11 342 | TCTTGTCA IGVFSM5941JXID H2 047_NZOJ_10M_10 343 | GACTTTGC IGVFSM5941JXID H2 047_NZOJ_10M_10 344 | TCTTGTCA IGVFSM2925KIGE H2 047_NZOJ_10M_11 345 | GACTTTGC IGVFSM2925KIGE H2 047_NZOJ_10M_11 346 | TATTCCTG IGVFSM3735WYFG H3 048_NZOJ_10F_10 347 | ATTGGCTC IGVFSM3735WYFG H3 048_NZOJ_10F_10 348 | TATTCCTG IGVFSM7325IMAE H3 048_NZOJ_10F_11 349 | ATTGGCTC IGVFSM7325IMAE H3 048_NZOJ_10F_11 350 | TCCATGTC IGVFSM5754TPRZ H4 049_NZOJ_10M_10 351 | GTGCTAGC IGVFSM5754TPRZ H4 049_NZOJ_10M_10 352 | TCCATGTC IGVFSM6425UPLJ H4 049_NZOJ_10M_11 353 | GTGCTAGC IGVFSM6425UPLJ H4 049_NZOJ_10M_11 354 | TTGTCATC IGVFSM1713ZBFY H5 050_NZOJ_10F_10 355 | CTTTCAAC IGVFSM1713ZBFY H5 050_NZOJ_10F_10 356 | TTGTCATC IGVFSM4889EESW H5 050_NZOJ_10F_11 357 | CTTTCAAC IGVFSM4889EESW H5 050_NZOJ_10F_11 358 | ATTTCCTG IGVFSM2896IHAT H6 051_NZOJ_10M_10 359 | ACTATTGC IGVFSM2896IHAT H6 051_NZOJ_10M_10 360 | ATTTCCTG IGVFSM0427HINK H6 051_NZOJ_10M_11 361 | ACTATTGC IGVFSM0427HINK H6 051_NZOJ_10M_11 362 | GTGTCTCC IGVFSM8339CJUO H7 052_NZOJ_10F_10 363 | ACTGGCTT IGVFSM8339CJUO H7 052_NZOJ_10F_10 364 | GTGTCTCC IGVFSM3012TVCO H7 052_NZOJ_10F_11 365 | ACTGGCTT IGVFSM3012TVCO H7 052_NZOJ_10F_11 366 | GTGTGTGT IGVFSM2662INEM H8 053_NZOJ_10M_10 367 | ATTAGGCT IGVFSM2662INEM H8 053_NZOJ_10M_10 368 | GTGTGTGT IGVFSM7621BJTR H8 053_NZOJ_10M_11 369 | ATTAGGCT IGVFSM7621BJTR H8 053_NZOJ_10M_11 370 | TATGCTTC IGVFSM4326PPHF H9 050_NZOJ_10F_08 371 | GCCTTTCA IGVFSM4326PPHF H9 050_NZOJ_10F_08 372 | TATGCTTC IGVFSM4265ZXJM H9 062_WSBJ_10F_08 373 | GCCTTTCA IGVFSM4265ZXJM H9 062_WSBJ_10F_08 374 | ATGGTGTT IGVFSM7580WBSP H10 051_NZOJ_10M_08 375 | ATTCTAGG IGVFSM7580WBSP H10 051_NZOJ_10M_08 376 | ATGGTGTT IGVFSM8686RRRP H10 061_WSBJ_10M_08 377 | ATTCTAGG IGVFSM8686RRRP H10 061_WSBJ_10M_08 378 | GAATAATG IGVFSM0525KCUV H11 052_NZOJ_10F_08 379 | CCTTACAT IGVFSM0525KCUV H11 052_NZOJ_10F_08 380 | GAATAATG IGVFSM3681WOHF H11 096_WSBJ_10F_08 381 | CCTTACAT IGVFSM3681WOHF H11 096_WSBJ_10F_08 382 | CCTCTGTG IGVFSM5808CHQB H12 053_NZOJ_10M_08 383 | ACATTTGG IGVFSM5808CHQB H12 053_NZOJ_10M_08 384 | CCTCTGTG IGVFSM7664LZLU H12 063_WSBJ_10M_08 385 | ACATTTGG IGVFSM7664LZLU H12 063_WSBJ_10M_08 386 | -------------------------------------------------------------------------------- /configs/IGVF_009_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM9731QOVH A1 016_B6J_10F_08 3 | CATTCCTA IGVFSM9731QOVH A1 016_B6J_10F_08 4 | CTGCTTTG IGVFSM7981FEKQ A2 017_B6J_10M_08 5 | CTTCATCA IGVFSM7981FEKQ A2 017_B6J_10M_08 6 | CTAAGGGA IGVFSM7273NNBM A3 018_B6J_10F_08 7 | CCTATATC IGVFSM7273NNBM A3 018_B6J_10F_08 8 | GCTTATAG IGVFSM2795NYTC A4 019_B6J_10M_08 9 | ACATTTAC IGVFSM2795NYTC A4 019_B6J_10M_08 10 | TCTGATCC IGVFSM2926ETSH A5 020_B6J_10F_08 11 | ACTTAGCT IGVFSM2926ETSH A5 020_B6J_10F_08 12 | TCTCTTGG IGVFSM4409GRZD A6 021_B6J_10M_08 13 | CCAATTCT IGVFSM4409GRZD A6 021_B6J_10M_08 14 | CAATTTCC IGVFSM6796IKTY A7 024_B6J_10F_08 15 | GCCTATCT IGVFSM6796IKTY A7 024_B6J_10F_08 16 | AGTCTCTT IGVFSM4127LBLM A8 025_B6J_10M_08 17 | ATGCTGCT IGVFSM4127LBLM A8 025_B6J_10M_08 18 | TGCTGCTC IGVFSM0349VWWY A9 016_B6J_10F_09 19 | CATTTACA IGVFSM0349VWWY A9 016_B6J_10F_09 20 | TGCTGCTC IGVFSM7878IZMN A9 066_NODJ_10F_09 21 | CATTTACA IGVFSM7878IZMN A9 066_NODJ_10F_09 22 | GTATTTCC IGVFSM3241ASWH A10 017_B6J_10M_09 23 | ACTCGTAA IGVFSM3241ASWH A10 017_B6J_10M_09 24 | GTATTTCC IGVFSM4726ZWYC A10 067_NODJ_10M_09 25 | ACTCGTAA IGVFSM4726ZWYC A10 067_NODJ_10M_09 26 | TTCCTGTG IGVFSM9474HYEG A11 018_B6J_10F_09 27 | CCTTTGCA IGVFSM9474HYEG A11 018_B6J_10F_09 28 | TTCCTGTG IGVFSM4214PFWU A11 068_NODJ_10F_09 29 | CCTTTGCA IGVFSM4214PFWU A11 068_NODJ_10F_09 30 | GCTGCTTC IGVFSM9788LCSW A12 019_B6J_10M_09 31 | ACTCCTGC IGVFSM9788LCSW A12 019_B6J_10M_09 32 | GCTGCTTC IGVFSM8898IMBT A12 069_NODJ_10M_09 33 | ACTCCTGC IGVFSM8898IMBT A12 069_NODJ_10M_09 34 | TATGTGTC IGVFSM1981FBYZ B1 066_NODJ_10F_08 35 | ATTTGGCA IGVFSM1981FBYZ B1 066_NODJ_10F_08 36 | CAATTCTC IGVFSM0149TNQV B2 067_NODJ_10M_08 37 | TTATTCTG IGVFSM0149TNQV B2 067_NODJ_10M_08 38 | TGGTCTCC IGVFSM2286NVNW B3 068_NODJ_10F_08 39 | TCATGCTC IGVFSM2286NVNW B3 068_NODJ_10F_08 40 | GCTCTTTA IGVFSM0256YAXR B4 069_NODJ_10M_08 41 | CATACTTC IGVFSM0256YAXR B4 069_NODJ_10M_08 42 | GCTGCATG IGVFSM6603NGXT B5 070_NODJ_10F_08 43 | CCGTTCTA IGVFSM6603NGXT B5 070_NODJ_10F_08 44 | ACTCATTT IGVFSM2251OZKQ B6 071_NODJ_10M_08 45 | GCTTCATA IGVFSM2251OZKQ B6 071_NODJ_10M_08 46 | AGTCTTGG IGVFSM0170ECBA B7 072_NODJ_10F_08 47 | CTCTGTGC IGVFSM0170ECBA B7 072_NODJ_10F_08 48 | GGTTCTTC IGVFSM5573LEDH B8 073_NODJ_10M_08 49 | CCCTTATA IGVFSM5573LEDH B8 073_NODJ_10M_08 50 | TCATGTTG IGVFSM4800CIZG B9 020_B6J_10F_09 51 | ACTGCTCT IGVFSM4800CIZG B9 020_B6J_10F_09 52 | TCATGTTG IGVFSM7567RTBV B9 070_NODJ_10F_09 53 | ACTGCTCT IGVFSM7567RTBV B9 070_NODJ_10F_09 54 | ATTTTGCC IGVFSM7243TNKF B10 021_B6J_10M_09 55 | CTCTAATC IGVFSM7243TNKF B10 021_B6J_10M_09 56 | ATTTTGCC IGVFSM4531FRYY B10 071_NODJ_10M_09 57 | CTCTAATC IGVFSM4531FRYY B10 071_NODJ_10M_09 58 | CTTCTGTA IGVFSM8674PTVY B11 024_B6J_10F_09 59 | ACCCTTGC IGVFSM8674PTVY B11 024_B6J_10F_09 60 | CTTCTGTA IGVFSM4518CECN B11 072_NODJ_10F_09 61 | ACCCTTGC IGVFSM4518CECN B11 072_NODJ_10F_09 62 | GTCCATCT IGVFSM3060AXDG B12 025_B6J_10M_09 63 | ATCTTAGG IGVFSM3060AXDG B12 025_B6J_10M_09 64 | GTCCATCT IGVFSM4828VZOR B12 073_NODJ_10M_09 65 | ATCTTAGG IGVFSM4828VZOR B12 073_NODJ_10M_09 66 | GCTATCTC IGVFSM5489EQDV C1 026_AJ_10F_08 67 | CATGTCTC IGVFSM5489EQDV C1 026_AJ_10F_08 68 | TAGTTTCC IGVFSM9075IJZC C2 029_AJ_10M_08 69 | TCATTGCA IGVFSM9075IJZC C2 029_AJ_10M_08 70 | TCCATTAT IGVFSM6339UEAO C3 028_AJ_10F_08 71 | ACACCTTT IGVFSM6339UEAO C3 028_AJ_10F_08 72 | AGGATTAA IGVFSM4824RRCE C4 031_AJ_10M_08 73 | AATTTCTC IGVFSM4824RRCE C4 031_AJ_10M_08 74 | AATCTTTC IGVFSM7056LBHR C5 030_AJ_10F_08 75 | ATTCATGG IGVFSM7056LBHR C5 030_AJ_10F_08 76 | GTCATATG IGVFSM6013ZWZO C6 033_AJ_10M_08 77 | ACTTTACC IGVFSM6013ZWZO C6 033_AJ_10M_08 78 | GTGCTTCC IGVFSM8570TOBS C7 032_AJ_10F_08 79 | CTTCTAAC IGVFSM8570TOBS C7 032_AJ_10F_08 80 | ATGTGTTG IGVFSM4324XCGU C8 035_AJ_10M_08 81 | CTATTTCA IGVFSM4324XCGU C8 035_AJ_10M_08 82 | CCATCTTG IGVFSM3057IFAI C9 026_AJ_10F_09 83 | TCTCATGC IGVFSM3057IFAI C9 026_AJ_10F_09 84 | CCATCTTG IGVFSM9088FTIY C9 076_PWKJ_10F_09 85 | TCTCATGC IGVFSM9088FTIY C9 076_PWKJ_10F_09 86 | TACTGTCT IGVFSM8586FNQO C10 029_AJ_10M_09 87 | ATCCTTAC IGVFSM8586FNQO C10 029_AJ_10M_09 88 | TACTGTCT IGVFSM2207LORL C10 077_PWKJ_10M_09 89 | ATCCTTAC IGVFSM2207LORL C10 077_PWKJ_10M_09 90 | TTCATCGC IGVFSM3536NVMG C11 028_AJ_10F_09 91 | TAAATATC IGVFSM3536NVMG C11 028_AJ_10F_09 92 | TTCATCGC IGVFSM4211TCCR C11 078_PWKJ_10F_09 93 | TAAATATC IGVFSM4211TCCR C11 078_PWKJ_10F_09 94 | ACTGTGGG IGVFSM4523NJGP C12 031_AJ_10M_09 95 | TTACCTGC IGVFSM4523NJGP C12 031_AJ_10M_09 96 | ACTGTGGG IGVFSM4917CZZF C12 079_PWKJ_10M_09 97 | TTACCTGC IGVFSM4917CZZF C12 079_PWKJ_10M_09 98 | TCTGTGCC IGVFSM5120VDBH D1 076_PWKJ_10F_08 99 | CACTTTCA IGVFSM5120VDBH D1 076_PWKJ_10F_08 100 | TCAATCTC IGVFSM2744HFBR D2 077_PWKJ_10M_08 101 | CACCTTTA IGVFSM2744HFBR D2 077_PWKJ_10M_08 102 | GTCCTCTG IGVFSM9958NNHY D3 078_PWKJ_10F_08 103 | CTGACTTC IGVFSM9958NNHY D3 078_PWKJ_10F_08 104 | TTACATTC IGVFSM0701NELT D4 079_PWKJ_10M_08 105 | CATTTGGA IGVFSM0701NELT D4 079_PWKJ_10M_08 106 | ATTCTGTC IGVFSM1448KEUX D5 080_PWKJ_10F_08 107 | GCTCTACT IGVFSM1448KEUX D5 080_PWKJ_10F_08 108 | TGTGTATG IGVFSM8451AOOU D6 081_PWKJ_10M_08 109 | GTTACGTA IGVFSM8451AOOU D6 081_PWKJ_10M_08 110 | TCCATTTG IGVFSM4227UNYC D7 084_PWKJ_10F_08 111 | CCTGTTGC IGVFSM4227UNYC D7 084_PWKJ_10F_08 112 | TTAGCTTC IGVFSM1696GVKP D8 085_PWKJ_10M_08 113 | CTATCATC IGVFSM1696GVKP D8 085_PWKJ_10M_08 114 | GTGCTTGA IGVFSM7352LZKM D9 030_AJ_10F_09 115 | GCTATCAT IGVFSM7352LZKM D9 030_AJ_10F_09 116 | GTGCTTGA IGVFSM4983BATQ D9 080_PWKJ_10F_09 117 | GCTATCAT IGVFSM4983BATQ D9 080_PWKJ_10F_09 118 | GTTTGTGA IGVFSM6020DPIE D10 033_AJ_10M_09 119 | ACATTCAT IGVFSM6020DPIE D10 033_AJ_10M_09 120 | GTTTGTGA IGVFSM8581GLVP D10 081_PWKJ_10M_09 121 | ACATTCAT IGVFSM8581GLVP D10 081_PWKJ_10M_09 122 | GAAATTAG IGVFSM3951CGSL D11 032_AJ_10F_09 123 | TTCGCTAC IGVFSM3951CGSL D11 032_AJ_10F_09 124 | GAAATTAG IGVFSM3357EWRJ D11 084_PWKJ_10F_09 125 | TTCGCTAC IGVFSM3357EWRJ D11 084_PWKJ_10F_09 126 | GCAAATTC IGVFSM3981QKEE D12 035_AJ_10M_09 127 | CATTCTAC IGVFSM3981QKEE D12 035_AJ_10M_09 128 | GCAAATTC IGVFSM8335WDIG D12 085_PWKJ_10M_09 129 | CATTCTAC IGVFSM8335WDIG D12 085_PWKJ_10M_09 130 | GAGGTTGA IGVFSM1632QLUR E1 036_129S1J_10F_08 131 | CACTTATC IGVFSM1632QLUR E1 036_129S1J_10F_08 132 | CCTGTCTG IGVFSM9668NECE E2 037_129S1J_10M_08 133 | ATAAGCTC IGVFSM9668NECE E2 037_129S1J_10M_08 134 | GTGGGTTC IGVFSM0340EAYH E3 038_129S1J_10F_08 135 | TCATCCTG IGVFSM0340EAYH E3 038_129S1J_10F_08 136 | TTTGCATC IGVFSM4755QPGT E4 041_129S1J_10M_08 137 | CCTGGTAT IGVFSM4755QPGT E4 041_129S1J_10M_08 138 | AGGTAATA IGVFSM9964SESF E5 040_129S1J_10F_08 139 | TGGTATAC IGVFSM9964SESF E5 040_129S1J_10F_08 140 | GTGCCTTC IGVFSM4576HVJC E6 043_129S1J_10M_08 141 | TTGGGAGA IGVFSM4576HVJC E6 043_129S1J_10M_08 142 | ATGTTTCC IGVFSM3033SSIU E7 044_129S1J_10F_08 143 | ACTTCATC IGVFSM3033SSIU E7 044_129S1J_10F_08 144 | CTTAATTC IGVFSM3513BNRI E8 045_129S1J_10M_08 145 | TCTCTAGC IGVFSM3513BNRI E8 045_129S1J_10M_08 146 | TCTGGCTC IGVFSM7015STPL E9 036_129S1J_10F_09 147 | ATGCCCTT IGVFSM7015STPL E9 036_129S1J_10F_09 148 | TCTGGCTC IGVFSM7915MIHZ E9 086_CASTJ_10F_09 149 | ATGCCCTT IGVFSM7915MIHZ E9 086_CASTJ_10F_09 150 | CATCATTT IGVFSM3870IKYE E10 037_129S1J_10M_09 151 | CCCAATTT IGVFSM3870IKYE E10 037_129S1J_10M_09 152 | CATCATTT IGVFSM1924DVVF E10 087_CASTJ_10M_09 153 | CCCAATTT IGVFSM1924DVVF E10 087_CASTJ_10M_09 154 | GTTGTCTC IGVFSM2985VTWQ E11 038_129S1J_10F_09 155 | ACTATATA IGVFSM2985VTWQ E11 038_129S1J_10F_09 156 | GTTGTCTC IGVFSM8639WEBM E11 088_CASTJ_10F_09 157 | ACTATATA IGVFSM8639WEBM E11 088_CASTJ_10F_09 158 | ATCTTCTG IGVFSM1728JVMJ E12 041_129S1J_10M_09 159 | CTCTATAC IGVFSM1728JVMJ E12 041_129S1J_10M_09 160 | ATCTTCTG IGVFSM0501BSTV E12 089_CASTJ_10M_09 161 | CTCTATAC IGVFSM0501BSTV E12 089_CASTJ_10M_09 162 | TGTTTGCC IGVFSM2352QEZL F1 086_CASTJ_10F_08 163 | CTGTCTCA IGVFSM2352QEZL F1 086_CASTJ_10F_08 164 | TTCTGTCA IGVFSM4914MZNP F2 087_CASTJ_10M_08 165 | GACCTTTC IGVFSM4914MZNP F2 087_CASTJ_10M_08 166 | ACGGACTC IGVFSM2528JPFP F3 088_CASTJ_10F_08 167 | GATTTGGC IGVFSM2528JPFP F3 088_CASTJ_10F_08 168 | TTTGGTCA IGVFSM0740TEWR F4 089_CASTJ_10M_08 169 | CGTCTAGG IGVFSM0740TEWR F4 089_CASTJ_10M_08 170 | TATCCGGG IGVFSM8717VBUZ F5 090_CASTJ_10F_08 171 | TACTCGAA IGVFSM8717VBUZ F5 090_CASTJ_10F_08 172 | TGTCATTC IGVFSM5442GAOY F6 091_CASTJ_10M_08 173 | CAGCCTTT IGVFSM5442GAOY F6 091_CASTJ_10M_08 174 | ATTCTCTG IGVFSM4807XVYB F7 094_CASTJ_10F_08 175 | CCTCATTA IGVFSM4807XVYB F7 094_CASTJ_10F_08 176 | TGGCTTCC IGVFSM5275FTRH F8 095_CASTJ_10M_08 177 | CTTATACC IGVFSM5275FTRH F8 095_CASTJ_10M_08 178 | TTGTTGCC IGVFSM7656VCGX F9 040_129S1J_10F_09 179 | TCTATTAC IGVFSM7656VCGX F9 040_129S1J_10F_09 180 | TTGTTGCC IGVFSM6781WLWW F9 090_CASTJ_10F_09 181 | TCTATTAC IGVFSM6781WLWW F9 090_CASTJ_10F_09 182 | GTCATCTC IGVFSM3274UVBQ F10 043_129S1J_10M_09 183 | CCTGCATT IGVFSM3274UVBQ F10 043_129S1J_10M_09 184 | GTCATCTC IGVFSM7315OJAM F10 091_CASTJ_10M_09 185 | CCTGCATT IGVFSM7315OJAM F10 091_CASTJ_10M_09 186 | TTGCTCAT IGVFSM9083BJCW F11 044_129S1J_10F_09 187 | CAATCCTT IGVFSM9083BJCW F11 044_129S1J_10F_09 188 | TTGCTCAT IGVFSM3937HVNK F11 094_CASTJ_10F_09 189 | CAATCCTT IGVFSM3937HVNK F11 094_CASTJ_10F_09 190 | CTGTCTGC IGVFSM2309TUXE F12 045_129S1J_10M_09 191 | TTGTCTTA IGVFSM2309TUXE F12 045_129S1J_10M_09 192 | CTGTCTGC IGVFSM0131ZKOP F12 093_CASTJ_10M_09 193 | TTGTCTTA IGVFSM0131ZKOP F12 093_CASTJ_10M_09 194 | TATATTCC IGVFSM0232VKZB G1 058_WSBJ_10F_08 195 | TCACTTTA IGVFSM0232VKZB G1 058_WSBJ_10F_08 196 | ATATTGGC IGVFSM9417BLQR G2 057_WSBJ_10M_08 197 | TGCTTGGG IGVFSM9417BLQR G2 057_WSBJ_10M_08 198 | GTGTCCTC IGVFSM0760BMNA G3 060_WSBJ_10F_08 199 | CGCTCATT IGVFSM0760BMNA G3 060_WSBJ_10F_08 200 | ATCTTCAT IGVFSM4075DZPE G4 059_WSBJ_10M_08 201 | GCCTCTAT IGVFSM4075DZPE G4 059_WSBJ_10M_08 202 | CGTGGTTG IGVFSM4265ZXJM G5 062_WSBJ_10F_08 203 | GAGCACAA IGVFSM4265ZXJM G5 062_WSBJ_10F_08 204 | TTGCATCC IGVFSM8686RRRP G6 061_WSBJ_10M_08 205 | CTCTTAAC IGVFSM8686RRRP G6 061_WSBJ_10M_08 206 | TCTTAATC IGVFSM3681WOHF G7 096_WSBJ_10F_08 207 | TCTAGGCT IGVFSM3681WOHF G7 096_WSBJ_10F_08 208 | TGCATTTC IGVFSM7664LZLU G8 063_WSBJ_10M_08 209 | AATTCTGC IGVFSM7664LZLU G8 063_WSBJ_10M_08 210 | GATGTTTC IGVFSM2869NKDL G9 046_NZOJ_10F_09 211 | CATTCTCA IGVFSM2869NKDL G9 046_NZOJ_10F_09 212 | GATGTTTC IGVFSM9077YRZW G9 058_WSBJ_10F_09 213 | CATTCTCA IGVFSM9077YRZW G9 058_WSBJ_10F_09 214 | ATCTTGTC IGVFSM8082YJJT G10 047_NZOJ_10M_09 215 | ACTTGCCT IGVFSM8082YJJT G10 047_NZOJ_10M_09 216 | ATCTTGTC IGVFSM1334FZTF G10 057_WSBJ_10M_09 217 | ACTTGCCT IGVFSM1334FZTF G10 057_WSBJ_10M_09 218 | TCATATTC IGVFSM4505WWVP G11 048_NZOJ_10F_09 219 | ATCATTGC IGVFSM4505WWVP G11 048_NZOJ_10F_09 220 | TCATATTC IGVFSM6194HVVO G11 060_WSBJ_10F_09 221 | ATCATTGC IGVFSM6194HVVO G11 060_WSBJ_10F_09 222 | TGGCCTCT IGVFSM7894QTQT G12 049_NZOJ_10M_09 223 | GTTCAACA IGVFSM7894QTQT G12 049_NZOJ_10M_09 224 | TGGCCTCT IGVFSM7285SRRG G12 059_WSBJ_10M_09 225 | GTTCAACA IGVFSM7285SRRG G12 059_WSBJ_10M_09 226 | CGTTGTCT IGVFSM9456XQYT H1 046_NZOJ_10F_08 227 | CCATTTGC IGVFSM9456XQYT H1 046_NZOJ_10F_08 228 | TCTTGTCA IGVFSM8242IPDC H2 047_NZOJ_10M_08 229 | GACTTTGC IGVFSM8242IPDC H2 047_NZOJ_10M_08 230 | TATTCCTG IGVFSM4848LHPG H3 048_NZOJ_10F_08 231 | ATTGGCTC IGVFSM4848LHPG H3 048_NZOJ_10F_08 232 | TCCATGTC IGVFSM3199ZHGC H4 049_NZOJ_10M_08 233 | GTGCTAGC IGVFSM3199ZHGC H4 049_NZOJ_10M_08 234 | TTGTCATC IGVFSM4326PPHF H5 050_NZOJ_10F_08 235 | CTTTCAAC IGVFSM4326PPHF H5 050_NZOJ_10F_08 236 | ATTTCCTG IGVFSM7580WBSP H6 051_NZOJ_10M_08 237 | ACTATTGC IGVFSM7580WBSP H6 051_NZOJ_10M_08 238 | GTGTCTCC IGVFSM0525KCUV H7 052_NZOJ_10F_08 239 | ACTGGCTT IGVFSM0525KCUV H7 052_NZOJ_10F_08 240 | GTGTGTGT IGVFSM5808CHQB H8 053_NZOJ_10M_08 241 | ATTAGGCT IGVFSM5808CHQB H8 053_NZOJ_10M_08 242 | TATGCTTC IGVFSM9303HUHF H9 050_NZOJ_10F_09 243 | GCCTTTCA IGVFSM9303HUHF H9 050_NZOJ_10F_09 244 | TATGCTTC IGVFSM2970OEMT H9 062_WSBJ_10F_09 245 | GCCTTTCA IGVFSM2970OEMT H9 062_WSBJ_10F_09 246 | ATGGTGTT IGVFSM0181XWPQ H10 051_NZOJ_10M_09 247 | ATTCTAGG IGVFSM0181XWPQ H10 051_NZOJ_10M_09 248 | ATGGTGTT IGVFSM0104SYAP H10 061_WSBJ_10M_09 249 | ATTCTAGG IGVFSM0104SYAP H10 061_WSBJ_10M_09 250 | GAATAATG IGVFSM1587OINL H11 052_NZOJ_10F_09 251 | CCTTACAT IGVFSM1587OINL H11 052_NZOJ_10F_09 252 | GAATAATG IGVFSM9060ZOSA H11 096_WSBJ_10F_09 253 | CCTTACAT IGVFSM9060ZOSA H11 096_WSBJ_10F_09 254 | CCTCTGTG IGVFSM5770UUHX H12 053_NZOJ_10M_09 255 | ACATTTGG IGVFSM5770UUHX H12 053_NZOJ_10M_09 256 | CCTCTGTG IGVFSM4351BICU H12 063_WSBJ_10M_09 257 | ACATTTGG IGVFSM4351BICU H12 063_WSBJ_10M_09 258 | -------------------------------------------------------------------------------- /configs/IGVF_010_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM0349VWWY A1 016_B6J_10F_09 3 | CATTCCTA IGVFSM0349VWWY A1 016_B6J_10F_09 4 | CTGCTTTG IGVFSM3241ASWH A2 017_B6J_10M_09 5 | CTTCATCA IGVFSM3241ASWH A2 017_B6J_10M_09 6 | CTAAGGGA IGVFSM9474HYEG A3 018_B6J_10F_09 7 | CCTATATC IGVFSM9474HYEG A3 018_B6J_10F_09 8 | GCTTATAG IGVFSM9788LCSW A4 019_B6J_10M_09 9 | ACATTTAC IGVFSM9788LCSW A4 019_B6J_10M_09 10 | TCTGATCC IGVFSM4800CIZG A5 020_B6J_10F_09 11 | ACTTAGCT IGVFSM4800CIZG A5 020_B6J_10F_09 12 | TCTCTTGG IGVFSM7243TNKF A6 021_B6J_10M_09 13 | CCAATTCT IGVFSM7243TNKF A6 021_B6J_10M_09 14 | CAATTTCC IGVFSM8674PTVY A7 024_B6J_10F_09 15 | GCCTATCT IGVFSM8674PTVY A7 024_B6J_10F_09 16 | AGTCTCTT IGVFSM3060AXDG A8 025_B6J_10M_09 17 | ATGCTGCT IGVFSM3060AXDG A8 025_B6J_10M_09 18 | TGCTGCTC IGVFSM4575TTYT A9 016_B6J_10F_16 19 | CATTTACA IGVFSM4575TTYT A9 016_B6J_10F_16 20 | TGCTGCTC IGVFSM4279QZLF A9 066_NODJ_10F_16 21 | CATTTACA IGVFSM4279QZLF A9 066_NODJ_10F_16 22 | GTATTTCC IGVFSM2276CJGW A10 017_B6J_10M_16 23 | ACTCGTAA IGVFSM2276CJGW A10 017_B6J_10M_16 24 | GTATTTCC IGVFSM1252BKWG A10 067_NODJ_10M_16 25 | ACTCGTAA IGVFSM1252BKWG A10 067_NODJ_10M_16 26 | TTCCTGTG IGVFSM0465UALO A11 018_B6J_10F_16 27 | CCTTTGCA IGVFSM0465UALO A11 018_B6J_10F_16 28 | TTCCTGTG IGVFSM8410WIND A11 074_NODJ_10F_16 29 | CCTTTGCA IGVFSM8410WIND A11 074_NODJ_10F_16 30 | GCTGCTTC IGVFSM3666GJLM A12 019_B6J_10M_16 31 | ACTCCTGC IGVFSM3666GJLM A12 019_B6J_10M_16 32 | GCTGCTTC IGVFSM7620ICFV A12 069_NODJ_10M_16 33 | ACTCCTGC IGVFSM7620ICFV A12 069_NODJ_10M_16 34 | TATGTGTC IGVFSM7878IZMN B1 066_NODJ_10F_09 35 | ATTTGGCA IGVFSM7878IZMN B1 066_NODJ_10F_09 36 | CAATTCTC IGVFSM4726ZWYC B2 067_NODJ_10M_09 37 | TTATTCTG IGVFSM4726ZWYC B2 067_NODJ_10M_09 38 | TGGTCTCC IGVFSM4214PFWU B3 068_NODJ_10F_09 39 | TCATGCTC IGVFSM4214PFWU B3 068_NODJ_10F_09 40 | GCTCTTTA IGVFSM8898IMBT B4 069_NODJ_10M_09 41 | CATACTTC IGVFSM8898IMBT B4 069_NODJ_10M_09 42 | GCTGCATG IGVFSM7567RTBV B5 070_NODJ_10F_09 43 | CCGTTCTA IGVFSM7567RTBV B5 070_NODJ_10F_09 44 | ACTCATTT IGVFSM4531FRYY B6 071_NODJ_10M_09 45 | GCTTCATA IGVFSM4531FRYY B6 071_NODJ_10M_09 46 | AGTCTTGG IGVFSM4518CECN B7 072_NODJ_10F_09 47 | CTCTGTGC IGVFSM4518CECN B7 072_NODJ_10F_09 48 | GGTTCTTC IGVFSM4828VZOR B8 073_NODJ_10M_09 49 | CCCTTATA IGVFSM4828VZOR B8 073_NODJ_10M_09 50 | TCATGTTG IGVFSM4471UQDS B9 020_B6J_10F_16 51 | ACTGCTCT IGVFSM4471UQDS B9 020_B6J_10F_16 52 | TCATGTTG IGVFSM3414NFLU B9 070_NODJ_10F_16 53 | ACTGCTCT IGVFSM3414NFLU B9 070_NODJ_10F_16 54 | ATTTTGCC IGVFSM0131WZLT B10 021_B6J_10M_16 55 | CTCTAATC IGVFSM0131WZLT B10 021_B6J_10M_16 56 | ATTTTGCC IGVFSM9301WUUD B10 071_NODJ_10M_16 57 | CTCTAATC IGVFSM9301WUUD B10 071_NODJ_10M_16 58 | CTTCTGTA IGVFSM5168ZHLV B11 024_B6J_10F_16 59 | ACCCTTGC IGVFSM5168ZHLV B11 024_B6J_10F_16 60 | CTTCTGTA IGVFSM5744JVUK B11 072_NODJ_10F_16 61 | ACCCTTGC IGVFSM5744JVUK B11 072_NODJ_10F_16 62 | GTCCATCT IGVFSM2944JZTR B12 025_B6J_10M_16 63 | ATCTTAGG IGVFSM2944JZTR B12 025_B6J_10M_16 64 | GTCCATCT IGVFSM6017WKVH B12 073_NODJ_10M_16 65 | ATCTTAGG IGVFSM6017WKVH B12 073_NODJ_10M_16 66 | GCTATCTC IGVFSM3057IFAI C1 026_AJ_10F_09 67 | CATGTCTC IGVFSM3057IFAI C1 026_AJ_10F_09 68 | TAGTTTCC IGVFSM8586FNQO C2 029_AJ_10M_09 69 | TCATTGCA IGVFSM8586FNQO C2 029_AJ_10M_09 70 | TCCATTAT IGVFSM3536NVMG C3 028_AJ_10F_09 71 | ACACCTTT IGVFSM3536NVMG C3 028_AJ_10F_09 72 | AGGATTAA IGVFSM4523NJGP C4 031_AJ_10M_09 73 | AATTTCTC IGVFSM4523NJGP C4 031_AJ_10M_09 74 | AATCTTTC IGVFSM7352LZKM C5 030_AJ_10F_09 75 | ATTCATGG IGVFSM7352LZKM C5 030_AJ_10F_09 76 | GTCATATG IGVFSM6020DPIE C6 033_AJ_10M_09 77 | ACTTTACC IGVFSM6020DPIE C6 033_AJ_10M_09 78 | GTGCTTCC IGVFSM3951CGSL C7 032_AJ_10F_09 79 | CTTCTAAC IGVFSM3951CGSL C7 032_AJ_10F_09 80 | ATGTGTTG IGVFSM3981QKEE C8 035_AJ_10M_09 81 | CTATTTCA IGVFSM3981QKEE C8 035_AJ_10M_09 82 | CCATCTTG IGVFSM8801AFPS C9 026_AJ_10F_16 83 | TCTCATGC IGVFSM8801AFPS C9 026_AJ_10F_16 84 | CCATCTTG IGVFSM2436WWNM C9 076_PWKJ_10F_16 85 | TCTCATGC IGVFSM2436WWNM C9 076_PWKJ_10F_16 86 | TACTGTCT IGVFSM8141CEOO C10 027_AJ_10M_16 87 | ATCCTTAC IGVFSM8141CEOO C10 027_AJ_10M_16 88 | TACTGTCT IGVFSM8807FWBB C10 077_PWKJ_10M_16 89 | ATCCTTAC IGVFSM8807FWBB C10 077_PWKJ_10M_16 90 | TTCATCGC IGVFSM4118LWUK C11 028_AJ_10F_16 91 | TAAATATC IGVFSM4118LWUK C11 028_AJ_10F_16 92 | TTCATCGC IGVFSM9269MUDI C11 078_PWKJ_10F_16 93 | TAAATATC IGVFSM9269MUDI C11 078_PWKJ_10F_16 94 | ACTGTGGG IGVFSM2182IYXX C12 031_AJ_10M_16 95 | TTACCTGC IGVFSM2182IYXX C12 031_AJ_10M_16 96 | ACTGTGGG IGVFSM2389EAOO C12 079_PWKJ_10M_16 97 | TTACCTGC IGVFSM2389EAOO C12 079_PWKJ_10M_16 98 | TCTGTGCC IGVFSM9088FTIY D1 076_PWKJ_10F_09 99 | CACTTTCA IGVFSM9088FTIY D1 076_PWKJ_10F_09 100 | TCAATCTC IGVFSM2207LORL D2 077_PWKJ_10M_09 101 | CACCTTTA IGVFSM2207LORL D2 077_PWKJ_10M_09 102 | GTCCTCTG IGVFSM4211TCCR D3 078_PWKJ_10F_09 103 | CTGACTTC IGVFSM4211TCCR D3 078_PWKJ_10F_09 104 | TTACATTC IGVFSM4917CZZF D4 079_PWKJ_10M_09 105 | CATTTGGA IGVFSM4917CZZF D4 079_PWKJ_10M_09 106 | ATTCTGTC IGVFSM4983BATQ D5 080_PWKJ_10F_09 107 | GCTCTACT IGVFSM4983BATQ D5 080_PWKJ_10F_09 108 | TGTGTATG IGVFSM8581GLVP D6 081_PWKJ_10M_09 109 | GTTACGTA IGVFSM8581GLVP D6 081_PWKJ_10M_09 110 | TCCATTTG IGVFSM3357EWRJ D7 084_PWKJ_10F_09 111 | CCTGTTGC IGVFSM3357EWRJ D7 084_PWKJ_10F_09 112 | TTAGCTTC IGVFSM8335WDIG D8 085_PWKJ_10M_09 113 | CTATCATC IGVFSM8335WDIG D8 085_PWKJ_10M_09 114 | GTGCTTGA IGVFSM5510EXRQ D9 030_AJ_10F_16 115 | GCTATCAT IGVFSM5510EXRQ D9 030_AJ_10F_16 116 | GTGCTTGA IGVFSM0334GXDS D9 080_PWKJ_10F_16 117 | GCTATCAT IGVFSM0334GXDS D9 080_PWKJ_10F_16 118 | GTTTGTGA IGVFSM4001HPLV D10 033_AJ_10M_16 119 | ACATTCAT IGVFSM4001HPLV D10 033_AJ_10M_16 120 | GTTTGTGA IGVFSM4237VCZG D10 081_PWKJ_10M_16 121 | ACATTCAT IGVFSM4237VCZG D10 081_PWKJ_10M_16 122 | GAAATTAG IGVFSM2425SGDB D11 034_AJ_10F_16 123 | TTCGCTAC IGVFSM2425SGDB D11 034_AJ_10F_16 124 | GAAATTAG IGVFSM1365IGJT D11 084_PWKJ_10F_16 125 | TTCGCTAC IGVFSM1365IGJT D11 084_PWKJ_10F_16 126 | GCAAATTC IGVFSM7990NFIW D12 035_AJ_10M_16 127 | CATTCTAC IGVFSM7990NFIW D12 035_AJ_10M_16 128 | GCAAATTC IGVFSM1986OPVB D12 085_PWKJ_10M_16 129 | CATTCTAC IGVFSM1986OPVB D12 085_PWKJ_10M_16 130 | GAGGTTGA IGVFSM7015STPL E1 036_129S1J_10F_09 131 | CACTTATC IGVFSM7015STPL E1 036_129S1J_10F_09 132 | CCTGTCTG IGVFSM3870IKYE E2 037_129S1J_10M_09 133 | ATAAGCTC IGVFSM3870IKYE E2 037_129S1J_10M_09 134 | GTGGGTTC IGVFSM2985VTWQ E3 038_129S1J_10F_09 135 | TCATCCTG IGVFSM2985VTWQ E3 038_129S1J_10F_09 136 | TTTGCATC IGVFSM1728JVMJ E4 041_129S1J_10M_09 137 | CCTGGTAT IGVFSM1728JVMJ E4 041_129S1J_10M_09 138 | AGGTAATA IGVFSM7656VCGX E5 040_129S1J_10F_09 139 | TGGTATAC IGVFSM7656VCGX E5 040_129S1J_10F_09 140 | GTGCCTTC IGVFSM3274UVBQ E6 043_129S1J_10M_09 141 | TTGGGAGA IGVFSM3274UVBQ E6 043_129S1J_10M_09 142 | ATGTTTCC IGVFSM9083BJCW E7 044_129S1J_10F_09 143 | ACTTCATC IGVFSM9083BJCW E7 044_129S1J_10F_09 144 | CTTAATTC IGVFSM2309TUXE E8 045_129S1J_10M_09 145 | TCTCTAGC IGVFSM2309TUXE E8 045_129S1J_10M_09 146 | TCTGGCTC IGVFSM6869OUVF E9 042_129S1J_10F_16 147 | ATGCCCTT IGVFSM6869OUVF E9 042_129S1J_10F_16 148 | TCTGGCTC IGVFSM0725SKMI E9 086_CASTJ_10F_16 149 | ATGCCCTT IGVFSM0725SKMI E9 086_CASTJ_10F_16 150 | CATCATTT IGVFSM5187OEBL E10 037_129S1J_10M_16 151 | CCCAATTT IGVFSM5187OEBL E10 037_129S1J_10M_16 152 | CATCATTT IGVFSM8092ISYK E10 087_CASTJ_10M_16 153 | CCCAATTT IGVFSM8092ISYK E10 087_CASTJ_10M_16 154 | GTTGTCTC IGVFSM7768VTDI E11 038_129S1J_10F_16 155 | ACTATATA IGVFSM7768VTDI E11 038_129S1J_10F_16 156 | GTTGTCTC IGVFSM3158KFTN E11 092_CASTJ_10F_16 157 | ACTATATA IGVFSM3158KFTN E11 092_CASTJ_10F_16 158 | ATCTTCTG IGVFSM1059YXHB E12 041_129S1J_10M_16 159 | CTCTATAC IGVFSM1059YXHB E12 041_129S1J_10M_16 160 | ATCTTCTG IGVFSM2176DUOO E12 089_CASTJ_10M_16 161 | CTCTATAC IGVFSM2176DUOO E12 089_CASTJ_10M_16 162 | TGTTTGCC IGVFSM7915MIHZ F1 086_CASTJ_10F_09 163 | CTGTCTCA IGVFSM7915MIHZ F1 086_CASTJ_10F_09 164 | TTCTGTCA IGVFSM1924DVVF F2 087_CASTJ_10M_09 165 | GACCTTTC IGVFSM1924DVVF F2 087_CASTJ_10M_09 166 | ACGGACTC IGVFSM8639WEBM F3 088_CASTJ_10F_09 167 | GATTTGGC IGVFSM8639WEBM F3 088_CASTJ_10F_09 168 | TTTGGTCA IGVFSM0501BSTV F4 089_CASTJ_10M_09 169 | CGTCTAGG IGVFSM0501BSTV F4 089_CASTJ_10M_09 170 | TATCCGGG IGVFSM6781WLWW F5 090_CASTJ_10F_09 171 | TACTCGAA IGVFSM6781WLWW F5 090_CASTJ_10F_09 172 | TGTCATTC IGVFSM7315OJAM F6 091_CASTJ_10M_09 173 | CAGCCTTT IGVFSM7315OJAM F6 091_CASTJ_10M_09 174 | ATTCTCTG IGVFSM3937HVNK F7 094_CASTJ_10F_09 175 | CCTCATTA IGVFSM3937HVNK F7 094_CASTJ_10F_09 176 | TGGCTTCC IGVFSM0131ZKOP F8 093_CASTJ_10M_09 177 | CTTATACC IGVFSM0131ZKOP F8 093_CASTJ_10M_09 178 | TTGTTGCC IGVFSM5139SKXC F9 040_129S1J_10F_16 179 | TCTATTAC IGVFSM5139SKXC F9 040_129S1J_10F_16 180 | TTGTTGCC IGVFSM7844SUGB F9 090_CASTJ_10F_16 181 | TCTATTAC IGVFSM7844SUGB F9 090_CASTJ_10F_16 182 | GTCATCTC IGVFSM7373DCLC F10 043_129S1J_10M_16 183 | CCTGCATT IGVFSM7373DCLC F10 043_129S1J_10M_16 184 | GTCATCTC IGVFSM1128BAML F10 091_CASTJ_10M_16 185 | CCTGCATT IGVFSM1128BAML F10 091_CASTJ_10M_16 186 | TTGCTCAT IGVFSM4259FCLE F11 044_129S1J_10F_16 187 | CAATCCTT IGVFSM4259FCLE F11 044_129S1J_10F_16 188 | TTGCTCAT IGVFSM4593QSDG F11 094_CASTJ_10F_16 189 | CAATCCTT IGVFSM4593QSDG F11 094_CASTJ_10F_16 190 | CTGTCTGC IGVFSM7248MKIA F12 045_129S1J_10M_16 191 | TTGTCTTA IGVFSM7248MKIA F12 045_129S1J_10M_16 192 | CTGTCTGC IGVFSM3110AEWG F12 093_CASTJ_10M_16 193 | TTGTCTTA IGVFSM3110AEWG F12 093_CASTJ_10M_16 194 | TATATTCC IGVFSM9077YRZW G1 058_WSBJ_10F_09 195 | TCACTTTA IGVFSM9077YRZW G1 058_WSBJ_10F_09 196 | ATATTGGC IGVFSM1334FZTF G2 057_WSBJ_10M_09 197 | TGCTTGGG IGVFSM1334FZTF G2 057_WSBJ_10M_09 198 | GTGTCCTC IGVFSM6194HVVO G3 060_WSBJ_10F_09 199 | CGCTCATT IGVFSM6194HVVO G3 060_WSBJ_10F_09 200 | ATCTTCAT IGVFSM7285SRRG G4 059_WSBJ_10M_09 201 | GCCTCTAT IGVFSM7285SRRG G4 059_WSBJ_10M_09 202 | CGTGGTTG IGVFSM2970OEMT G5 062_WSBJ_10F_09 203 | GAGCACAA IGVFSM2970OEMT G5 062_WSBJ_10F_09 204 | TTGCATCC IGVFSM0104SYAP G6 061_WSBJ_10M_09 205 | CTCTTAAC IGVFSM0104SYAP G6 061_WSBJ_10M_09 206 | TCTTAATC IGVFSM9060ZOSA G7 096_WSBJ_10F_09 207 | TCTAGGCT IGVFSM9060ZOSA G7 096_WSBJ_10F_09 208 | TGCATTTC IGVFSM4351BICU G8 063_WSBJ_10M_09 209 | AATTCTGC IGVFSM4351BICU G8 063_WSBJ_10M_09 210 | GATGTTTC IGVFSM5504RVNQ G9 046_NZOJ_10F_16 211 | CATTCTCA IGVFSM5504RVNQ G9 046_NZOJ_10F_16 212 | GATGTTTC IGVFSM0217YUAM G9 058_WSBJ_10F_16 213 | CATTCTCA IGVFSM0217YUAM G9 058_WSBJ_10F_16 214 | ATCTTGTC IGVFSM1584RGVM G10 047_NZOJ_10M_16 215 | ACTTGCCT IGVFSM1584RGVM G10 047_NZOJ_10M_16 216 | ATCTTGTC IGVFSM5571BGFV G10 057_WSBJ_10M_16 217 | ACTTGCCT IGVFSM5571BGFV G10 057_WSBJ_10M_16 218 | TCATATTC IGVFSM8444KPOJ G11 048_NZOJ_10F_16 219 | ATCATTGC IGVFSM8444KPOJ G11 048_NZOJ_10F_16 220 | TCATATTC IGVFSM0943LRWD G11 064_WSBJ_10F_16 221 | ATCATTGC IGVFSM0943LRWD G11 064_WSBJ_10F_16 222 | TGGCCTCT IGVFSM4489MUQD G12 049_NZOJ_10M_16 223 | GTTCAACA IGVFSM4489MUQD G12 049_NZOJ_10M_16 224 | TGGCCTCT IGVFSM8559RKMK G12 059_WSBJ_10M_16 225 | GTTCAACA IGVFSM8559RKMK G12 059_WSBJ_10M_16 226 | CGTTGTCT IGVFSM2869NKDL H1 046_NZOJ_10F_09 227 | CCATTTGC IGVFSM2869NKDL H1 046_NZOJ_10F_09 228 | TCTTGTCA IGVFSM8082YJJT H2 047_NZOJ_10M_09 229 | GACTTTGC IGVFSM8082YJJT H2 047_NZOJ_10M_09 230 | TATTCCTG IGVFSM4505WWVP H3 048_NZOJ_10F_09 231 | ATTGGCTC IGVFSM4505WWVP H3 048_NZOJ_10F_09 232 | TCCATGTC IGVFSM7894QTQT H4 049_NZOJ_10M_09 233 | GTGCTAGC IGVFSM7894QTQT H4 049_NZOJ_10M_09 234 | TTGTCATC IGVFSM9303HUHF H5 050_NZOJ_10F_09 235 | CTTTCAAC IGVFSM9303HUHF H5 050_NZOJ_10F_09 236 | ATTTCCTG IGVFSM0181XWPQ H6 051_NZOJ_10M_09 237 | ACTATTGC IGVFSM0181XWPQ H6 051_NZOJ_10M_09 238 | GTGTCTCC IGVFSM1587OINL H7 052_NZOJ_10F_09 239 | ACTGGCTT IGVFSM1587OINL H7 052_NZOJ_10F_09 240 | GTGTGTGT IGVFSM5770UUHX H8 053_NZOJ_10M_09 241 | ATTAGGCT IGVFSM5770UUHX H8 053_NZOJ_10M_09 242 | TATGCTTC IGVFSM5314ZJEY H9 050_NZOJ_10F_16 243 | GCCTTTCA IGVFSM5314ZJEY H9 050_NZOJ_10F_16 244 | TATGCTTC IGVFSM2242OSDW H9 062_WSBJ_10F_16 245 | GCCTTTCA IGVFSM2242OSDW H9 062_WSBJ_10F_16 246 | ATGGTGTT IGVFSM1469JLYZ H10 051_NZOJ_10M_16 247 | ATTCTAGG IGVFSM1469JLYZ H10 051_NZOJ_10M_16 248 | ATGGTGTT IGVFSM7709RATJ H10 061_WSBJ_10M_16 249 | ATTCTAGG IGVFSM7709RATJ H10 061_WSBJ_10M_16 250 | GAATAATG IGVFSM0037THNT H11 052_NZOJ_10F_16 251 | CCTTACAT IGVFSM0037THNT H11 052_NZOJ_10F_16 252 | GAATAATG IGVFSM4280ZZUH H11 096_WSBJ_10F_16 253 | CCTTACAT IGVFSM4280ZZUH H11 096_WSBJ_10F_16 254 | CCTCTGTG IGVFSM5658GGTC H12 053_NZOJ_10M_16 255 | ACATTTGG IGVFSM5658GGTC H12 053_NZOJ_10M_16 256 | CCTCTGTG IGVFSM5083IADN H12 063_WSBJ_10M_16 257 | ACATTTGG IGVFSM5083IADN H12 063_WSBJ_10M_16 258 | -------------------------------------------------------------------------------- /configs/IGVF_011_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM4575TTYT A1 016_B6J_10F_16 3 | CATTCCTA IGVFSM4575TTYT A1 016_B6J_10F_16 4 | CTGCTTTG IGVFSM2276CJGW A2 017_B6J_10M_16 5 | CTTCATCA IGVFSM2276CJGW A2 017_B6J_10M_16 6 | CTAAGGGA IGVFSM0465UALO A3 018_B6J_10F_16 7 | CCTATATC IGVFSM0465UALO A3 018_B6J_10F_16 8 | GCTTATAG IGVFSM3666GJLM A4 019_B6J_10M_16 9 | ACATTTAC IGVFSM3666GJLM A4 019_B6J_10M_16 10 | TCTGATCC IGVFSM4471UQDS A5 020_B6J_10F_16 11 | ACTTAGCT IGVFSM4471UQDS A5 020_B6J_10F_16 12 | TCTCTTGG IGVFSM0131WZLT A6 021_B6J_10M_16 13 | CCAATTCT IGVFSM0131WZLT A6 021_B6J_10M_16 14 | CAATTTCC IGVFSM5168ZHLV A7 024_B6J_10F_16 15 | GCCTATCT IGVFSM5168ZHLV A7 024_B6J_10F_16 16 | AGTCTCTT IGVFSM2944JZTR A8 025_B6J_10M_16 17 | ATGCTGCT IGVFSM2944JZTR A8 025_B6J_10M_16 18 | TGCTGCTC IGVFSM2747ZOJJ,IGVFSM9909OKAR A9 016_B6J_10F_03 19 | CATTTACA IGVFSM2747ZOJJ,IGVFSM9909OKAR A9 016_B6J_10F_03 20 | TGCTGCTC IGVFSM1810KYOB,IGVFSM5439QLWY A9 066_NODJ_10F_03 21 | CATTTACA IGVFSM1810KYOB,IGVFSM5439QLWY A9 066_NODJ_10F_03 22 | GTATTTCC IGVFSM5751LMFR,IGVFSM9616JAGA A10 017_B6J_10M_03 23 | ACTCGTAA IGVFSM5751LMFR,IGVFSM9616JAGA A10 017_B6J_10M_03 24 | GTATTTCC IGVFSM3477RPDP,IGVFSM6514BRQT A10 067_NODJ_10M_03 25 | ACTCGTAA IGVFSM3477RPDP,IGVFSM6514BRQT A10 067_NODJ_10M_03 26 | TTCCTGTG IGVFSM4584AIMA,IGVFSM6999WOUL A11 018_B6J_10F_03 27 | CCTTTGCA IGVFSM4584AIMA,IGVFSM6999WOUL A11 018_B6J_10F_03 28 | TTCCTGTG IGVFSM0483CXTW,IGVFSM2315DNPR A11 068_NODJ_10F_03 29 | CCTTTGCA IGVFSM0483CXTW,IGVFSM2315DNPR A11 068_NODJ_10F_03 30 | GCTGCTTC IGVFSM3502KEWR,IGVFSM9565QVTN A12 019_B6J_10M_03 31 | ACTCCTGC IGVFSM3502KEWR,IGVFSM9565QVTN A12 019_B6J_10M_03 32 | GCTGCTTC IGVFSM2210CUOC,IGVFSM3655BTER A12 069_NODJ_10M_03 33 | ACTCCTGC IGVFSM2210CUOC,IGVFSM3655BTER A12 069_NODJ_10M_03 34 | TATGTGTC IGVFSM4279QZLF B1 066_NODJ_10F_16 35 | ATTTGGCA IGVFSM4279QZLF B1 066_NODJ_10F_16 36 | CAATTCTC IGVFSM1252BKWG B2 067_NODJ_10M_16 37 | TTATTCTG IGVFSM1252BKWG B2 067_NODJ_10M_16 38 | TGGTCTCC IGVFSM8410WIND B3 074_NODJ_10F_16 39 | TCATGCTC IGVFSM8410WIND B3 074_NODJ_10F_16 40 | GCTCTTTA IGVFSM7620ICFV B4 069_NODJ_10M_16 41 | CATACTTC IGVFSM7620ICFV B4 069_NODJ_10M_16 42 | GCTGCATG IGVFSM3414NFLU B5 070_NODJ_10F_16 43 | CCGTTCTA IGVFSM3414NFLU B5 070_NODJ_10F_16 44 | ACTCATTT IGVFSM9301WUUD B6 071_NODJ_10M_16 45 | GCTTCATA IGVFSM9301WUUD B6 071_NODJ_10M_16 46 | AGTCTTGG IGVFSM5744JVUK B7 072_NODJ_10F_16 47 | CTCTGTGC IGVFSM5744JVUK B7 072_NODJ_10F_16 48 | GGTTCTTC IGVFSM6017WKVH B8 073_NODJ_10M_16 49 | CCCTTATA IGVFSM6017WKVH B8 073_NODJ_10M_16 50 | TCATGTTG IGVFSM6578SAUC,IGVFSM9764WOWB B9 020_B6J_10F_03 51 | ACTGCTCT IGVFSM6578SAUC,IGVFSM9764WOWB B9 020_B6J_10F_03 52 | TCATGTTG IGVFSM1916FXAR,IGVFSM4132TDOU B9 070_NODJ_10F_03 53 | ACTGCTCT IGVFSM1916FXAR,IGVFSM4132TDOU B9 070_NODJ_10F_03 54 | ATTTTGCC IGVFSM2795QIAK,IGVFSM3360ORUF B10 021_B6J_10M_03 55 | CTCTAATC IGVFSM2795QIAK,IGVFSM3360ORUF B10 021_B6J_10M_03 56 | ATTTTGCC IGVFSM2219SJUB,IGVFSM9423CHGE B10 071_NODJ_10M_03 57 | CTCTAATC IGVFSM2219SJUB,IGVFSM9423CHGE B10 071_NODJ_10M_03 58 | CTTCTGTA IGVFSM0587AFGX,IGVFSM7596ZIPA B11 024_B6J_10F_03 59 | ACCCTTGC IGVFSM0587AFGX,IGVFSM7596ZIPA B11 024_B6J_10F_03 60 | CTTCTGTA IGVFSM0749UUSU,IGVFSM1724CQMW B11 072_NODJ_10F_03 61 | ACCCTTGC IGVFSM0749UUSU,IGVFSM1724CQMW B11 072_NODJ_10F_03 62 | GTCCATCT IGVFSM1457MNSR,IGVFSM4108RLII B12 025_B6J_10M_03 63 | ATCTTAGG IGVFSM1457MNSR,IGVFSM4108RLII B12 025_B6J_10M_03 64 | GTCCATCT IGVFSM5506IVPG,IGVFSM9890CMQT B12 073_NODJ_10M_03 65 | ATCTTAGG IGVFSM5506IVPG,IGVFSM9890CMQT B12 073_NODJ_10M_03 66 | GCTATCTC IGVFSM8801AFPS C1 026_AJ_10F_16 67 | CATGTCTC IGVFSM8801AFPS C1 026_AJ_10F_16 68 | TAGTTTCC IGVFSM8141CEOO C2 027_AJ_10M_16 69 | TCATTGCA IGVFSM8141CEOO C2 027_AJ_10M_16 70 | TCCATTAT IGVFSM4118LWUK C3 028_AJ_10F_16 71 | ACACCTTT IGVFSM4118LWUK C3 028_AJ_10F_16 72 | AGGATTAA IGVFSM2182IYXX C4 031_AJ_10M_16 73 | AATTTCTC IGVFSM2182IYXX C4 031_AJ_10M_16 74 | AATCTTTC IGVFSM5510EXRQ C5 030_AJ_10F_16 75 | ATTCATGG IGVFSM5510EXRQ C5 030_AJ_10F_16 76 | GTCATATG IGVFSM4001HPLV C6 033_AJ_10M_16 77 | ACTTTACC IGVFSM4001HPLV C6 033_AJ_10M_16 78 | GTGCTTCC IGVFSM2425SGDB C7 034_AJ_10F_16 79 | CTTCTAAC IGVFSM2425SGDB C7 034_AJ_10F_16 80 | ATGTGTTG IGVFSM7990NFIW C8 035_AJ_10M_16 81 | CTATTTCA IGVFSM7990NFIW C8 035_AJ_10M_16 82 | CCATCTTG IGVFSM2423BNZZ,IGVFSM4370URZQ C9 026_AJ_10F_03 83 | TCTCATGC IGVFSM2423BNZZ,IGVFSM4370URZQ C9 026_AJ_10F_03 84 | CCATCTTG IGVFSM0918MYKM,IGVFSM7550NDQP C9 076_PWKJ_10F_03 85 | TCTCATGC IGVFSM0918MYKM,IGVFSM7550NDQP C9 076_PWKJ_10F_03 86 | TACTGTCT IGVFSM2957XPNR,IGVFSM7221OIET C10 029_AJ_10M_03 87 | ATCCTTAC IGVFSM2957XPNR,IGVFSM7221OIET C10 029_AJ_10M_03 88 | TACTGTCT IGVFSM0563DEOO,IGVFSM6013VRIK C10 077_PWKJ_10M_03 89 | ATCCTTAC IGVFSM0563DEOO,IGVFSM6013VRIK C10 077_PWKJ_10M_03 90 | TTCATCGC IGVFSM7981HLTV,IGVFSM8529NIEC C11 028_AJ_10F_03 91 | TAAATATC IGVFSM7981HLTV,IGVFSM8529NIEC C11 028_AJ_10F_03 92 | TTCATCGC IGVFSM0623LMKH,IGVFSM6356IYPX C11 078_PWKJ_10F_03 93 | TAAATATC IGVFSM0623LMKH,IGVFSM6356IYPX C11 078_PWKJ_10F_03 94 | ACTGTGGG IGVFSM6144DRYM,IGVFSM8120ZQGC C12 031_AJ_10M_03 95 | TTACCTGC IGVFSM6144DRYM,IGVFSM8120ZQGC C12 031_AJ_10M_03 96 | ACTGTGGG IGVFSM2048SMTE,IGVFSM4224SVKL C12 079_PWKJ_10M_03 97 | TTACCTGC IGVFSM2048SMTE,IGVFSM4224SVKL C12 079_PWKJ_10M_03 98 | TCTGTGCC IGVFSM2436WWNM D1 076_PWKJ_10F_16 99 | CACTTTCA IGVFSM2436WWNM D1 076_PWKJ_10F_16 100 | TCAATCTC IGVFSM8807FWBB D2 077_PWKJ_10M_16 101 | CACCTTTA IGVFSM8807FWBB D2 077_PWKJ_10M_16 102 | GTCCTCTG IGVFSM9269MUDI D3 078_PWKJ_10F_16 103 | CTGACTTC IGVFSM9269MUDI D3 078_PWKJ_10F_16 104 | TTACATTC IGVFSM2389EAOO D4 079_PWKJ_10M_16 105 | CATTTGGA IGVFSM2389EAOO D4 079_PWKJ_10M_16 106 | ATTCTGTC IGVFSM0334GXDS D5 080_PWKJ_10F_16 107 | GCTCTACT IGVFSM0334GXDS D5 080_PWKJ_10F_16 108 | TGTGTATG IGVFSM4237VCZG D6 081_PWKJ_10M_16 109 | GTTACGTA IGVFSM4237VCZG D6 081_PWKJ_10M_16 110 | TCCATTTG IGVFSM1365IGJT D7 084_PWKJ_10F_16 111 | CCTGTTGC IGVFSM1365IGJT D7 084_PWKJ_10F_16 112 | TTAGCTTC IGVFSM1986OPVB D8 085_PWKJ_10M_16 113 | CTATCATC IGVFSM1986OPVB D8 085_PWKJ_10M_16 114 | GTGCTTGA IGVFSM0425PEQP,IGVFSM9442VMKA D9 030_AJ_10F_03 115 | GCTATCAT IGVFSM0425PEQP,IGVFSM9442VMKA D9 030_AJ_10F_03 116 | GTGCTTGA IGVFSM1463UXNU,IGVFSM3905UDST D9 080_PWKJ_10F_03 117 | GCTATCAT IGVFSM1463UXNU,IGVFSM3905UDST D9 080_PWKJ_10F_03 118 | GTTTGTGA IGVFSM0406DUWH,IGVFSM9867TADD D10 033_AJ_10M_03 119 | ACATTCAT IGVFSM0406DUWH,IGVFSM9867TADD D10 033_AJ_10M_03 120 | GTTTGTGA IGVFSM0454IWHA,IGVFSM1764RZHQ D10 081_PWKJ_10M_03 121 | ACATTCAT IGVFSM0454IWHA,IGVFSM1764RZHQ D10 081_PWKJ_10M_03 122 | GAAATTAG IGVFSM3195CJCF,IGVFSM6726YGIG D11 032_AJ_10F_03 123 | TTCGCTAC IGVFSM3195CJCF,IGVFSM6726YGIG D11 032_AJ_10F_03 124 | GAAATTAG IGVFSM2111IGAF,IGVFSM7111UROK D11 084_PWKJ_10F_03 125 | TTCGCTAC IGVFSM2111IGAF,IGVFSM7111UROK D11 084_PWKJ_10F_03 126 | GCAAATTC IGVFSM4131CTSJ,IGVFSM4651QBMQ D12 035_AJ_10M_03 127 | CATTCTAC IGVFSM4131CTSJ,IGVFSM4651QBMQ D12 035_AJ_10M_03 128 | GCAAATTC IGVFSM1227KXDL,IGVFSM5036ECAW D12 085_PWKJ_10M_03 129 | CATTCTAC IGVFSM1227KXDL,IGVFSM5036ECAW D12 085_PWKJ_10M_03 130 | GAGGTTGA IGVFSM6869OUVF E1 042_129S1J_10F_16 131 | CACTTATC IGVFSM6869OUVF E1 042_129S1J_10F_16 132 | CCTGTCTG IGVFSM5187OEBL E2 037_129S1J_10M_16 133 | ATAAGCTC IGVFSM5187OEBL E2 037_129S1J_10M_16 134 | GTGGGTTC IGVFSM7768VTDI E3 038_129S1J_10F_16 135 | TCATCCTG IGVFSM7768VTDI E3 038_129S1J_10F_16 136 | TTTGCATC IGVFSM1059YXHB E4 041_129S1J_10M_16 137 | CCTGGTAT IGVFSM1059YXHB E4 041_129S1J_10M_16 138 | AGGTAATA IGVFSM5139SKXC E5 040_129S1J_10F_16 139 | TGGTATAC IGVFSM5139SKXC E5 040_129S1J_10F_16 140 | GTGCCTTC IGVFSM7373DCLC E6 043_129S1J_10M_16 141 | TTGGGAGA IGVFSM7373DCLC E6 043_129S1J_10M_16 142 | ATGTTTCC IGVFSM4259FCLE E7 044_129S1J_10F_16 143 | ACTTCATC IGVFSM4259FCLE E7 044_129S1J_10F_16 144 | CTTAATTC IGVFSM7248MKIA E8 045_129S1J_10M_16 145 | TCTCTAGC IGVFSM7248MKIA E8 045_129S1J_10M_16 146 | TCTGGCTC IGVFSM8124ZHLJ,IGVFSM9227EIZD E9 036_129S1J_10F_03 147 | ATGCCCTT IGVFSM8124ZHLJ,IGVFSM9227EIZD E9 036_129S1J_10F_03 148 | TCTGGCTC IGVFSM7195PKWY,IGVFSM7666QOZY E9 086_CASTJ_10F_03 149 | ATGCCCTT IGVFSM7195PKWY,IGVFSM7666QOZY E9 086_CASTJ_10F_03 150 | CATCATTT IGVFSM0860OBUU,IGVFSM2419NKNV E10 037_129S1J_10M_03 151 | CCCAATTT IGVFSM0860OBUU,IGVFSM2419NKNV E10 037_129S1J_10M_03 152 | CATCATTT IGVFSM7317YYMK,IGVFSM8253LIZU E10 087_CASTJ_10M_03 153 | CCCAATTT IGVFSM7317YYMK,IGVFSM8253LIZU E10 087_CASTJ_10M_03 154 | GTTGTCTC IGVFSM0225XPQG,IGVFSM1783ISPH E11 038_129S1J_10F_03 155 | ACTATATA IGVFSM0225XPQG,IGVFSM1783ISPH E11 038_129S1J_10F_03 156 | GTTGTCTC IGVFSM3708BQMH,IGVFSM8386KIXU E11 088_CASTJ_10F_03 157 | ACTATATA IGVFSM3708BQMH,IGVFSM8386KIXU E11 088_CASTJ_10F_03 158 | ATCTTCTG IGVFSM4535GZXJ,IGVFSM9603NVUP E12 041_129S1J_10M_03 159 | CTCTATAC IGVFSM4535GZXJ,IGVFSM9603NVUP E12 041_129S1J_10M_03 160 | ATCTTCTG IGVFSM6275QJJU,IGVFSM7470VZNE E12 089_CASTJ_10M_03 161 | CTCTATAC IGVFSM6275QJJU,IGVFSM7470VZNE E12 089_CASTJ_10M_03 162 | TGTTTGCC IGVFSM0725SKMI F1 086_CASTJ_10F_16 163 | CTGTCTCA IGVFSM0725SKMI F1 086_CASTJ_10F_16 164 | TTCTGTCA IGVFSM8092ISYK F2 087_CASTJ_10M_16 165 | GACCTTTC IGVFSM8092ISYK F2 087_CASTJ_10M_16 166 | ACGGACTC IGVFSM3158KFTN F3 092_CASTJ_10F_16 167 | GATTTGGC IGVFSM3158KFTN F3 092_CASTJ_10F_16 168 | TTTGGTCA IGVFSM2176DUOO F4 089_CASTJ_10M_16 169 | CGTCTAGG IGVFSM2176DUOO F4 089_CASTJ_10M_16 170 | TATCCGGG IGVFSM7844SUGB F5 090_CASTJ_10F_16 171 | TACTCGAA IGVFSM7844SUGB F5 090_CASTJ_10F_16 172 | TGTCATTC IGVFSM1128BAML F6 091_CASTJ_10M_16 173 | CAGCCTTT IGVFSM1128BAML F6 091_CASTJ_10M_16 174 | ATTCTCTG IGVFSM4593QSDG F7 094_CASTJ_10F_16 175 | CCTCATTA IGVFSM4593QSDG F7 094_CASTJ_10F_16 176 | TGGCTTCC IGVFSM3110AEWG F8 093_CASTJ_10M_16 177 | CTTATACC IGVFSM3110AEWG F8 093_CASTJ_10M_16 178 | TTGTTGCC IGVFSM1865RBAP,IGVFSM3592ZCYS F9 040_129S1J_10F_03 179 | TCTATTAC IGVFSM1865RBAP,IGVFSM3592ZCYS F9 040_129S1J_10F_03 180 | TTGTTGCC IGVFSM3391TANO,IGVFSM9194WULA F9 090_CASTJ_10F_03 181 | TCTATTAC IGVFSM3391TANO,IGVFSM9194WULA F9 090_CASTJ_10F_03 182 | GTCATCTC IGVFSM2592YCXF,IGVFSM4046THJJ F10 043_129S1J_10M_03 183 | CCTGCATT IGVFSM2592YCXF,IGVFSM4046THJJ F10 043_129S1J_10M_03 184 | GTCATCTC IGVFSM3523HTHO,IGVFSM4618XBBU F10 091_CASTJ_10M_03 185 | CCTGCATT IGVFSM3523HTHO,IGVFSM4618XBBU F10 091_CASTJ_10M_03 186 | TTGCTCAT IGVFSM0923PDGB,IGVFSM8263PWJC F11 044_129S1J_10F_03 187 | CAATCCTT IGVFSM0923PDGB,IGVFSM8263PWJC F11 044_129S1J_10F_03 188 | TTGCTCAT IGVFSM7747QNMD,IGVFSM8043HCTC F11 094_CASTJ_10F_03 189 | CAATCCTT IGVFSM7747QNMD,IGVFSM8043HCTC F11 094_CASTJ_10F_03 190 | CTGTCTGC IGVFSM0221ZKMO,IGVFSM9934DIHO F12 045_129S1J_10M_03 191 | TTGTCTTA IGVFSM0221ZKMO,IGVFSM9934DIHO F12 045_129S1J_10M_03 192 | CTGTCTGC IGVFSM0611PVMT,IGVFSM8601VZGE F12 093_CASTJ_10M_03 193 | TTGTCTTA IGVFSM0611PVMT,IGVFSM8601VZGE F12 093_CASTJ_10M_03 194 | TATATTCC IGVFSM0217YUAM G1 058_WSBJ_10F_16 195 | TCACTTTA IGVFSM0217YUAM G1 058_WSBJ_10F_16 196 | ATATTGGC IGVFSM5571BGFV G2 057_WSBJ_10M_16 197 | TGCTTGGG IGVFSM5571BGFV G2 057_WSBJ_10M_16 198 | GTGTCCTC IGVFSM0943LRWD G3 064_WSBJ_10F_16 199 | CGCTCATT IGVFSM0943LRWD G3 064_WSBJ_10F_16 200 | ATCTTCAT IGVFSM8559RKMK G4 059_WSBJ_10M_16 201 | GCCTCTAT IGVFSM8559RKMK G4 059_WSBJ_10M_16 202 | CGTGGTTG IGVFSM2242OSDW G5 062_WSBJ_10F_16 203 | GAGCACAA IGVFSM2242OSDW G5 062_WSBJ_10F_16 204 | TTGCATCC IGVFSM7709RATJ G6 061_WSBJ_10M_16 205 | CTCTTAAC IGVFSM7709RATJ G6 061_WSBJ_10M_16 206 | TCTTAATC IGVFSM4280ZZUH G7 096_WSBJ_10F_16 207 | TCTAGGCT IGVFSM4280ZZUH G7 096_WSBJ_10F_16 208 | TGCATTTC IGVFSM5083IADN G8 063_WSBJ_10M_16 209 | AATTCTGC IGVFSM5083IADN G8 063_WSBJ_10M_16 210 | GATGTTTC IGVFSM1395QLCT,IGVFSM2105LIWI G9 058_WSBJ_10F_03 211 | CATTCTCA IGVFSM1395QLCT,IGVFSM2105LIWI G9 058_WSBJ_10F_03 212 | GATGTTTC IGVFSM0322EOHO,IGVFSM4189AKUL G9 092_CASTJ_10F_03 213 | CATTCTCA IGVFSM0322EOHO,IGVFSM4189AKUL G9 092_CASTJ_10F_03 214 | ATCTTGTC IGVFSM7371QPPK,IGVFSM9072COND G10 047_NZOJ_10M_03 215 | ACTTGCCT IGVFSM7371QPPK,IGVFSM9072COND G10 047_NZOJ_10M_03 216 | ATCTTGTC IGVFSM1203GHYB,IGVFSM6575IFHC G10 057_WSBJ_10M_03 217 | ACTTGCCT IGVFSM1203GHYB,IGVFSM6575IFHC G10 057_WSBJ_10M_03 218 | TCATATTC IGVFSM8490EBUM,IGVFSM9852CDAM G11 048_NZOJ_10F_03 219 | ATCATTGC IGVFSM8490EBUM,IGVFSM9852CDAM G11 048_NZOJ_10F_03 220 | TCATATTC IGVFSM1996USDH,IGVFSM9916UWTV G11 060_WSBJ_10F_03 221 | ATCATTGC IGVFSM1996USDH,IGVFSM9916UWTV G11 060_WSBJ_10F_03 222 | TGGCCTCT IGVFSM0101ITFE,IGVFSM4528ONTR G12 049_NZOJ_10M_03 223 | GTTCAACA IGVFSM0101ITFE,IGVFSM4528ONTR G12 049_NZOJ_10M_03 224 | TGGCCTCT IGVFSM1116FVJP,IGVFSM1295CUJX G12 059_WSBJ_10M_03 225 | GTTCAACA IGVFSM1116FVJP,IGVFSM1295CUJX G12 059_WSBJ_10M_03 226 | CGTTGTCT IGVFSM5504RVNQ H1 046_NZOJ_10F_16 227 | CCATTTGC IGVFSM5504RVNQ H1 046_NZOJ_10F_16 228 | TCTTGTCA IGVFSM1584RGVM H2 047_NZOJ_10M_16 229 | GACTTTGC IGVFSM1584RGVM H2 047_NZOJ_10M_16 230 | TATTCCTG IGVFSM8444KPOJ H3 048_NZOJ_10F_16 231 | ATTGGCTC IGVFSM8444KPOJ H3 048_NZOJ_10F_16 232 | TCCATGTC IGVFSM4489MUQD H4 049_NZOJ_10M_16 233 | GTGCTAGC IGVFSM4489MUQD H4 049_NZOJ_10M_16 234 | TTGTCATC IGVFSM5314ZJEY H5 050_NZOJ_10F_16 235 | CTTTCAAC IGVFSM5314ZJEY H5 050_NZOJ_10F_16 236 | ATTTCCTG IGVFSM1469JLYZ H6 051_NZOJ_10M_16 237 | ACTATTGC IGVFSM1469JLYZ H6 051_NZOJ_10M_16 238 | GTGTCTCC IGVFSM0037THNT H7 052_NZOJ_10F_16 239 | ACTGGCTT IGVFSM0037THNT H7 052_NZOJ_10F_16 240 | GTGTGTGT IGVFSM5658GGTC H8 053_NZOJ_10M_16 241 | ATTAGGCT IGVFSM5658GGTC H8 053_NZOJ_10M_16 242 | TATGCTTC IGVFSM0561GQRI,IGVFSM5306QAYC H9 050_NZOJ_10F_03 243 | GCCTTTCA IGVFSM0561GQRI,IGVFSM5306QAYC H9 050_NZOJ_10F_03 244 | TATGCTTC IGVFSM2903TFAJ,IGVFSM5785PIAM H9 062_WSBJ_10F_03 245 | GCCTTTCA IGVFSM2903TFAJ,IGVFSM5785PIAM H9 062_WSBJ_10F_03 246 | ATGGTGTT IGVFSM1083MRIY,IGVFSM5958RVMJ H10 051_NZOJ_10M_03 247 | ATTCTAGG IGVFSM1083MRIY,IGVFSM5958RVMJ H10 051_NZOJ_10M_03 248 | ATGGTGTT IGVFSM0431DSEH,IGVFSM0898KHQX H10 061_WSBJ_10M_03 249 | ATTCTAGG IGVFSM0431DSEH,IGVFSM0898KHQX H10 061_WSBJ_10M_03 250 | GAATAATG IGVFSM6096DCNO,IGVFSM8959FRNP H11 052_NZOJ_10F_03 251 | CCTTACAT IGVFSM6096DCNO,IGVFSM8959FRNP H11 052_NZOJ_10F_03 252 | GAATAATG IGVFSM1901NWCD,IGVFSM7994PCAR H11 096_WSBJ_10F_03 253 | CCTTACAT IGVFSM1901NWCD,IGVFSM7994PCAR H11 096_WSBJ_10F_03 254 | CCTCTGTG IGVFSM8856ZHGA,IGVFSM9234QGBN H12 053_NZOJ_10M_03 255 | ACATTTGG IGVFSM8856ZHGA,IGVFSM9234QGBN H12 053_NZOJ_10M_03 256 | CCTCTGTG IGVFSM1039KCGC,IGVFSM8727ZEXW H12 063_WSBJ_10M_03 257 | ACATTTGG IGVFSM1039KCGC,IGVFSM8727ZEXW H12 063_WSBJ_10M_03 258 | -------------------------------------------------------------------------------- /configs/IGVF_012_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC IGVFSM9731QOVH A1 016_B6J_10F_08 3 | CATTCCTA IGVFSM9731QOVH A1 016_B6J_10F_08 4 | CTGCTTTG IGVFSM9731QOVH A2 016_B6J_10F_08 5 | CTTCATCA IGVFSM9731QOVH A2 016_B6J_10F_08 6 | CTAAGGGA IGVFSM9731QOVH A3 016_B6J_10F_08 7 | CCTATATC IGVFSM9731QOVH A3 016_B6J_10F_08 8 | GCTTATAG IGVFSM9731QOVH A4 016_B6J_10F_08 9 | ACATTTAC IGVFSM9731QOVH A4 016_B6J_10F_08 10 | TCTGATCC IGVFSM4761JWVH A5 022_B6J_10F_16 11 | ACTTAGCT IGVFSM4761JWVH A5 022_B6J_10F_16 12 | TCTCTTGG IGVFSM4761JWVH A6 022_B6J_10F_16 13 | CCAATTCT IGVFSM4761JWVH A6 022_B6J_10F_16 14 | CAATTTCC IGVFSM4761JWVH A7 022_B6J_10F_16 15 | GCCTATCT IGVFSM4761JWVH A7 022_B6J_10F_16 16 | AGTCTCTT IGVFSM4761JWVH A8 022_B6J_10F_16 17 | ATGCTGCT IGVFSM4761JWVH A8 022_B6J_10F_16 18 | TGCTGCTC IGVFSM5294ZSIL A9 029_AJ_10M_06 19 | CATTTACA IGVFSM5294ZSIL A9 029_AJ_10M_06 20 | GTATTTCC IGVFSM5294ZSIL A10 029_AJ_10M_06 21 | ACTCGTAA IGVFSM5294ZSIL A10 029_AJ_10M_06 22 | TTCCTGTG IGVFSM5294ZSIL A11 029_AJ_10M_06 23 | CCTTTGCA IGVFSM5294ZSIL A11 029_AJ_10M_06 24 | GCTGCTTC IGVFSM5294ZSIL A12 029_AJ_10M_06 25 | ACTCCTGC IGVFSM5294ZSIL A12 029_AJ_10M_06 26 | TATGTGTC IGVFSM4608HMDV B1 031_AJ_10M_06 27 | ATTTGGCA IGVFSM4608HMDV B1 031_AJ_10M_06 28 | CAATTCTC IGVFSM4608HMDV B2 031_AJ_10M_06 29 | TTATTCTG IGVFSM4608HMDV B2 031_AJ_10M_06 30 | TGGTCTCC IGVFSM4608HMDV B3 031_AJ_10M_06 31 | TCATGCTC IGVFSM4608HMDV B3 031_AJ_10M_06 32 | GCTCTTTA IGVFSM4608HMDV B4 031_AJ_10M_06 33 | CATACTTC IGVFSM4608HMDV B4 031_AJ_10M_06 34 | GCTGCATG IGVFSM8242IPDC B5 047_NZOJ_10M_08 35 | CCGTTCTA IGVFSM8242IPDC B5 047_NZOJ_10M_08 36 | ACTCATTT IGVFSM8242IPDC B6 047_NZOJ_10M_08 37 | GCTTCATA IGVFSM8242IPDC B6 047_NZOJ_10M_08 38 | AGTCTTGG IGVFSM8242IPDC B7 047_NZOJ_10M_08 39 | CTCTGTGC IGVFSM8242IPDC B7 047_NZOJ_10M_08 40 | GGTTCTTC IGVFSM8242IPDC B8 047_NZOJ_10M_08 41 | CCCTTATA IGVFSM8242IPDC B8 047_NZOJ_10M_08 42 | TCATGTTG IGVFSM1961UWLF B9 122_B6J_10F_16 43 | ACTGCTCT IGVFSM1961UWLF B9 122_B6J_10F_16 44 | ATTTTGCC IGVFSM1961UWLF B10 122_B6J_10F_16 45 | CTCTAATC IGVFSM1961UWLF B10 122_B6J_10F_16 46 | CTTCTGTA IGVFSM1961UWLF B11 122_B6J_10F_16 47 | ACCCTTGC IGVFSM1961UWLF B11 122_B6J_10F_16 48 | GTCCATCT IGVFSM1961UWLF B12 122_B6J_10F_16 49 | ATCTTAGG IGVFSM1961UWLF B12 122_B6J_10F_16 50 | GCTATCTC IGVFSM1839OFVA,IGVFSM8201XPIS C1 046_NZOJ_10F_03 51 | CATGTCTC IGVFSM1839OFVA,IGVFSM8201XPIS C1 046_NZOJ_10F_03 52 | TAGTTTCC IGVFSM1839OFVA,IGVFSM8201XPIS C2 046_NZOJ_10F_03 53 | TCATTGCA IGVFSM1839OFVA,IGVFSM8201XPIS C2 046_NZOJ_10F_03 54 | TCCATTAT IGVFSM1839OFVA,IGVFSM8201XPIS C3 046_NZOJ_10F_03 55 | ACACCTTT IGVFSM1839OFVA,IGVFSM8201XPIS C3 046_NZOJ_10F_03 56 | AGGATTAA IGVFSM1839OFVA,IGVFSM8201XPIS C4 046_NZOJ_10F_03 57 | AATTTCTC IGVFSM1839OFVA,IGVFSM8201XPIS C4 046_NZOJ_10F_03 58 | AATCTTTC IGVFSM3432ZCOX C5 058_WSBJ_10F_06 59 | ATTCATGG IGVFSM3432ZCOX C5 058_WSBJ_10F_06 60 | GTCATATG IGVFSM3432ZCOX C6 058_WSBJ_10F_06 61 | ACTTTACC IGVFSM3432ZCOX C6 058_WSBJ_10F_06 62 | GTGCTTCC IGVFSM3432ZCOX C7 058_WSBJ_10F_06 63 | CTTCTAAC IGVFSM3432ZCOX C7 058_WSBJ_10F_06 64 | ATGTGTTG IGVFSM3432ZCOX C8 058_WSBJ_10F_06 65 | CTATTTCA IGVFSM3432ZCOX C8 058_WSBJ_10F_06 66 | CCATCTTG IGVFSM5120VDBH C9 076_PWKJ_10F_08 67 | TCTCATGC IGVFSM5120VDBH C9 076_PWKJ_10F_08 68 | TACTGTCT IGVFSM5120VDBH C10 076_PWKJ_10F_08 69 | ATCCTTAC IGVFSM5120VDBH C10 076_PWKJ_10F_08 70 | TTCATCGC IGVFSM5120VDBH C11 076_PWKJ_10F_08 71 | TAAATATC IGVFSM5120VDBH C11 076_PWKJ_10F_08 72 | ACTGTGGG IGVFSM5120VDBH C12 076_PWKJ_10F_08 73 | TTACCTGC IGVFSM5120VDBH C12 076_PWKJ_10F_08 74 | TCTGTGCC IGVFSM1456DXFQ D1 057_WSBJ_10M_06 75 | CACTTTCA IGVFSM1456DXFQ D1 057_WSBJ_10M_06 76 | TCAATCTC IGVFSM1456DXFQ D2 057_WSBJ_10M_06 77 | CACCTTTA IGVFSM1456DXFQ D2 057_WSBJ_10M_06 78 | GTCCTCTG IGVFSM1456DXFQ D3 057_WSBJ_10M_06 79 | CTGACTTC IGVFSM1456DXFQ D3 057_WSBJ_10M_06 80 | TTACATTC IGVFSM1456DXFQ D4 057_WSBJ_10M_06 81 | CATTTGGA IGVFSM1456DXFQ D4 057_WSBJ_10M_06 82 | ATTCTGTC IGVFSM2791YRHP,IGVFSM8078MQQC D5 046_NZOJ_10F_01 83 | GCTCTACT IGVFSM2791YRHP,IGVFSM8078MQQC D5 046_NZOJ_10F_01 84 | TGTGTATG IGVFSM2791YRHP,IGVFSM8078MQQC D6 046_NZOJ_10F_01 85 | GTTACGTA IGVFSM2791YRHP,IGVFSM8078MQQC D6 046_NZOJ_10F_01 86 | TCCATTTG IGVFSM2791YRHP,IGVFSM8078MQQC D7 046_NZOJ_10F_01 87 | CCTGTTGC IGVFSM2791YRHP,IGVFSM8078MQQC D7 046_NZOJ_10F_01 88 | TTAGCTTC IGVFSM2791YRHP,IGVFSM8078MQQC D8 046_NZOJ_10F_01 89 | CTATCATC IGVFSM2791YRHP,IGVFSM8078MQQC D8 046_NZOJ_10F_01 90 | GTGCTTGA IGVFSM3113AHHA D9 062_WSBJ_10F_06 91 | GCTATCAT IGVFSM3113AHHA D9 062_WSBJ_10F_06 92 | GTTTGTGA IGVFSM3113AHHA D10 062_WSBJ_10F_06 93 | ACATTCAT IGVFSM3113AHHA D10 062_WSBJ_10F_06 94 | GAAATTAG IGVFSM3113AHHA D11 062_WSBJ_10F_06 95 | TTCGCTAC IGVFSM3113AHHA D11 062_WSBJ_10F_06 96 | GCAAATTC IGVFSM3113AHHA D12 062_WSBJ_10F_06 97 | CATTCTAC IGVFSM3113AHHA D12 062_WSBJ_10F_06 98 | -------------------------------------------------------------------------------- /configs/IGVF_015_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode accession well tissue 2 | CATCATCC A1 239_TREM2_10M_01 3 | CATTCCTA A1 239_TREM2_10M_01 4 | CTGCTTTG A2 239_TREM2_10M_03 5 | CTTCATCA A2 239_TREM2_10M_03 6 | CTAAGGGA A3 239_TREM2_10M_05 7 | CCTATATC A3 239_TREM2_10M_05 8 | GCTTATAG A4 239_TREM2_10M_06 9 | ACATTTAC A4 239_TREM2_10M_06 10 | TCTGATCC A5 239_TREM2_10M_08 11 | ACTTAGCT A5 239_TREM2_10M_08 12 | TCTCTTGG A6 239_TREM2_10M_27 13 | CCAATTCT A6 239_TREM2_10M_27 14 | TCTCTTGG A6 239_TREM2_10M_29 15 | CCAATTCT A6 239_TREM2_10M_29 16 | CAATTTCC A7 239_TREM2_10M_31 17 | GCCTATCT A7 239_TREM2_10M_31 18 | AGTCTCTT A8 239_TREM2_10M_33 19 | ATGCTGCT A8 239_TREM2_10M_33 20 | TGCTGCTC A9 239_TREM2_10M_20 21 | CATTTACA A9 239_TREM2_10M_20 22 | GTATTTCC A10 239_TREM2_10M_01 23 | ACTCGTAA A10 239_TREM2_10M_01 24 | TTCCTGTG A11 239_TREM2_10M_03 25 | CCTTTGCA A11 239_TREM2_10M_03 26 | GCTGCTTC A12 239_TREM2_10M_08 27 | ACTCCTGC A12 239_TREM2_10M_08 28 | TATGTGTC B1 240_TREM2_10F_01 29 | ATTTGGCA B1 240_TREM2_10F_01 30 | CAATTCTC B2 240_TREM2_10F_03 31 | TTATTCTG B2 240_TREM2_10F_03 32 | TGGTCTCC B3 240_TREM2_10F_05 33 | TCATGCTC B3 240_TREM2_10F_05 34 | GCTCTTTA B4 240_TREM2_10F_06 35 | CATACTTC B4 240_TREM2_10F_06 36 | GCTGCATG B5 240_TREM2_10F_08 37 | CCGTTCTA B5 240_TREM2_10F_08 38 | ACTCATTT B6 240_TREM2_10F_10 39 | GCTTCATA B6 240_TREM2_10F_10 40 | ACTCATTT B6 240_TREM2_10F_11 41 | GCTTCATA B6 240_TREM2_10F_11 42 | AGTCTTGG B7 240_TREM2_10F_31 43 | CTCTGTGC B7 240_TREM2_10F_31 44 | GGTTCTTC B8 240_TREM2_10F_33 45 | CCCTTATA B8 240_TREM2_10F_33 46 | TCATGTTG B9 240_TREM2_10F_20 47 | ACTGCTCT B9 240_TREM2_10F_20 48 | ATTTTGCC B10 240_TREM2_10F_01 49 | CTCTAATC B10 240_TREM2_10F_01 50 | CTTCTGTA B11 240_TREM2_10F_03 51 | ACCCTTGC B11 240_TREM2_10F_03 52 | GTCCATCT B12 240_TREM2_10F_08 53 | ATCTTAGG B12 240_TREM2_10F_08 54 | GCTATCTC C1 241_TREM2_10M_01 55 | CATGTCTC C1 241_TREM2_10M_01 56 | TAGTTTCC C2 241_TREM2_10M_03 57 | TCATTGCA C2 241_TREM2_10M_03 58 | TCCATTAT C3 241_TREM2_10M_05 59 | ACACCTTT C3 241_TREM2_10M_05 60 | AGGATTAA C4 241_TREM2_10M_06 61 | AATTTCTC C4 241_TREM2_10M_06 62 | AATCTTTC C5 241_TREM2_10M_08 63 | ATTCATGG C5 241_TREM2_10M_08 64 | GTCATATG C6 241_TREM2_10M_27 65 | ACTTTACC C6 241_TREM2_10M_27 66 | GTCATATG C6 241_TREM2_10M_29 67 | ACTTTACC C6 241_TREM2_10M_29 68 | GTGCTTCC C7 241_TREM2_10M_31 69 | CTTCTAAC C7 241_TREM2_10M_31 70 | ATGTGTTG C8 241_TREM2_10M_33 71 | CTATTTCA C8 241_TREM2_10M_33 72 | CCATCTTG C9 241_TREM2_10M_20 73 | TCTCATGC C9 241_TREM2_10M_20 74 | TACTGTCT C10 241_TREM2_10M_01 75 | ATCCTTAC C10 241_TREM2_10M_01 76 | TTCATCGC C11 241_TREM2_10M_03 77 | TAAATATC C11 241_TREM2_10M_03 78 | ACTGTGGG C12 241_TREM2_10M_08 79 | TTACCTGC C12 241_TREM2_10M_08 80 | TCTGTGCC D1 242_TREM2_10F_01 81 | CACTTTCA D1 242_TREM2_10F_01 82 | TCAATCTC D2 242_TREM2_10F_03 83 | CACCTTTA D2 242_TREM2_10F_03 84 | GTCCTCTG D3 242_TREM2_10F_05 85 | CTGACTTC D3 242_TREM2_10F_05 86 | TTACATTC D4 242_TREM2_10F_06 87 | CATTTGGA D4 242_TREM2_10F_06 88 | ATTCTGTC D5 242_TREM2_10F_08 89 | GCTCTACT D5 242_TREM2_10F_08 90 | TGTGTATG D6 242_TREM2_10F_10 91 | GTTACGTA D6 242_TREM2_10F_10 92 | TGTGTATG D6 242_TREM2_10F_11 93 | GTTACGTA D6 242_TREM2_10F_11 94 | TCCATTTG D7 242_TREM2_10F_31 95 | CCTGTTGC D7 242_TREM2_10F_31 96 | TTAGCTTC D8 242_TREM2_10F_33 97 | CTATCATC D8 242_TREM2_10F_33 98 | GTGCTTGA D9 242_TREM2_10F_20 99 | GCTATCAT D9 242_TREM2_10F_20 100 | GTTTGTGA D10 242_TREM2_10F_01 101 | ACATTCAT D10 242_TREM2_10F_01 102 | GAAATTAG D11 242_TREM2_10F_03 103 | TTCGCTAC D11 242_TREM2_10F_03 104 | GCAAATTC D12 242_TREM2_10F_08 105 | CATTCTAC D12 242_TREM2_10F_08 106 | GAGGTTGA E1 243_TREM2_10M_01 107 | CACTTATC E1 243_TREM2_10M_01 108 | CCTGTCTG E2 243_TREM2_10M_03 109 | ATAAGCTC E2 243_TREM2_10M_03 110 | GTGGGTTC E3 243_TREM2_10M_05 111 | TCATCCTG E3 243_TREM2_10M_05 112 | TTTGCATC E4 243_TREM2_10M_06 113 | CCTGGTAT E4 243_TREM2_10M_06 114 | AGGTAATA E5 243_TREM2_10M_08 115 | TGGTATAC E5 243_TREM2_10M_08 116 | GTGCCTTC E6 243_TREM2_10M_27 117 | TTGGGAGA E6 243_TREM2_10M_27 118 | GTGCCTTC E6 243_TREM2_10M_29 119 | TTGGGAGA E6 243_TREM2_10M_29 120 | ATGTTTCC E7 243_TREM2_10M_31 121 | ACTTCATC E7 243_TREM2_10M_31 122 | CTTAATTC E8 243_TREM2_10M_33 123 | TCTCTAGC E8 243_TREM2_10M_33 124 | TCTGGCTC E9 243_TREM2_10M_20 125 | ATGCCCTT E9 243_TREM2_10M_20 126 | CATCATTT E10 243_TREM2_10M_01 127 | CCCAATTT E10 243_TREM2_10M_01 128 | GTTGTCTC E11 243_TREM2_10M_03 129 | ACTATATA E11 243_TREM2_10M_03 130 | ATCTTCTG E12 243_TREM2_10M_08 131 | CTCTATAC E12 243_TREM2_10M_08 132 | TGTTTGCC F1 244_TREM2_10F_01 133 | CTGTCTCA F1 244_TREM2_10F_01 134 | TTCTGTCA F2 244_TREM2_10F_03 135 | GACCTTTC F2 244_TREM2_10F_03 136 | ACGGACTC F3 244_TREM2_10F_05 137 | GATTTGGC F3 244_TREM2_10F_05 138 | TTTGGTCA F4 244_TREM2_10F_06 139 | CGTCTAGG F4 244_TREM2_10F_06 140 | TATCCGGG F5 244_TREM2_10F_08 141 | TACTCGAA F5 244_TREM2_10F_08 142 | TGTCATTC F6 244_TREM2_10F_10 143 | CAGCCTTT F6 244_TREM2_10F_10 144 | TGTCATTC F6 244_TREM2_10F_11 145 | CAGCCTTT F6 244_TREM2_10F_11 146 | ATTCTCTG F7 244_TREM2_10F_31 147 | CCTCATTA F7 244_TREM2_10F_31 148 | TGGCTTCC F8 244_TREM2_10F_33 149 | CTTATACC F8 244_TREM2_10F_33 150 | TTGTTGCC F9 248_TREM2_10F_20 151 | TCTATTAC F9 248_TREM2_10F_20 152 | GTCATCTC F10 244_TREM2_10F_01 153 | CCTGCATT F10 244_TREM2_10F_01 154 | TTGCTCAT F11 244_TREM2_10F_03 155 | CAATCCTT F11 244_TREM2_10F_03 156 | CTGTCTGC F12 244_TREM2_10F_08 157 | TTGTCTTA F12 244_TREM2_10F_08 158 | TATATTCC G1 245_TREM2_10M_01 159 | TCACTTTA G1 245_TREM2_10M_01 160 | ATATTGGC G2 245_TREM2_10M_03 161 | TGCTTGGG G2 245_TREM2_10M_03 162 | GTGTCCTC G3 245_TREM2_10M_05 163 | CGCTCATT G3 245_TREM2_10M_05 164 | ATCTTCAT G4 245_TREM2_10M_06 165 | GCCTCTAT G4 245_TREM2_10M_06 166 | CGTGGTTG G5 245_TREM2_10M_08 167 | GAGCACAA G5 245_TREM2_10M_08 168 | TTGCATCC G6 245_TREM2_10M_27 169 | CTCTTAAC G6 245_TREM2_10M_27 170 | TTGCATCC G6 245_TREM2_10M_29 171 | CTCTTAAC G6 245_TREM2_10M_29 172 | TCTTAATC G7 245_TREM2_10M_31 173 | TCTAGGCT G7 245_TREM2_10M_31 174 | TGCATTTC G8 245_TREM2_10M_33 175 | AATTCTGC G8 245_TREM2_10M_33 176 | GATGTTTC G9 247_TREM2_10M_20 177 | CATTCTCA G9 247_TREM2_10M_20 178 | ATCTTGTC G10 245_TREM2_10M_01 179 | ACTTGCCT G10 245_TREM2_10M_01 180 | TCATATTC G11 245_TREM2_10M_03 181 | ATCATTGC G11 245_TREM2_10M_03 182 | TGGCCTCT G12 245_TREM2_10M_08 183 | GTTCAACA G12 245_TREM2_10M_08 184 | CGTTGTCT H1 248_TREM2_10F_01 185 | CCATTTGC H1 248_TREM2_10F_01 186 | TCTTGTCA H2 248_TREM2_10F_03 187 | GACTTTGC H2 248_TREM2_10F_03 188 | TATTCCTG H3 248_TREM2_10F_05 189 | ATTGGCTC H3 248_TREM2_10F_05 190 | TCCATGTC H4 248_TREM2_10F_06 191 | GTGCTAGC H4 248_TREM2_10F_06 192 | TTGTCATC H5 248_TREM2_10F_08 193 | CTTTCAAC H5 248_TREM2_10F_08 194 | ATTTCCTG H6 248_TREM2_10F_10 195 | ACTATTGC H6 248_TREM2_10F_10 196 | ATTTCCTG H6 248_TREM2_10F_11 197 | ACTATTGC H6 248_TREM2_10F_11 198 | GTGTCTCC H7 248_TREM2_10F_31 199 | ACTGGCTT H7 248_TREM2_10F_31 200 | GTGTGTGT H8 248_TREM2_10F_33 201 | ATTAGGCT H8 248_TREM2_10F_33 202 | TATGCTTC H9 250_TREM2_10F_20 203 | GCCTTTCA H9 250_TREM2_10F_20 204 | ATGGTGTT H10 248_TREM2_10F_01 205 | ATTCTAGG H10 248_TREM2_10F_01 206 | GAATAATG H11 248_TREM2_10F_03 207 | CCTTACAT H11 248_TREM2_10F_03 208 | CCTCTGTG H12 248_TREM2_10F_08 209 | ACATTTGG H12 248_TREM2_10F_08 210 | -------------------------------------------------------------------------------- /configs/IGVF_B01_barcode_sample_map.tsv: -------------------------------------------------------------------------------- 1 | barcode sample seqspec_region_id parse_barcode_type well lab_sample_id 2 | CATCATCC IGVFSM7772DGMA barcode-1 R A1 118_B6J_10F_21 3 | CATTCCTA IGVFSM7772DGMA barcode-1 T A1 118_B6J_10F_21 4 | CTGCTTTG IGVFSM2279TQMZ barcode-1 R A2 117_B6J_10M_21 5 | CTTCATCA IGVFSM2279TQMZ barcode-1 T A2 117_B6J_10M_21 6 | CTAAGGGA IGVFSM7772DGMA barcode-1 R A3 118_B6J_10F_21 7 | CCTATATC IGVFSM7772DGMA barcode-1 T A3 118_B6J_10F_21 8 | GCTTATAG IGVFSM2279TQMZ barcode-1 R A4 117_B6J_10M_21 9 | ACATTTAC IGVFSM2279TQMZ barcode-1 T A4 117_B6J_10M_21 10 | TCTGATCC IGVFSM7772DGMA barcode-1 R A5 118_B6J_10F_21 11 | ACTTAGCT IGVFSM7772DGMA barcode-1 T A5 118_B6J_10F_21 12 | TCTCTTGG IGVFSM2279TQMZ barcode-1 R A6 117_B6J_10M_21 13 | CCAATTCT IGVFSM2279TQMZ barcode-1 T A6 117_B6J_10M_21 14 | CAATTTCC IGVFSM7772DGMA barcode-1 R A7 118_B6J_10F_21 15 | GCCTATCT IGVFSM7772DGMA barcode-1 T A7 118_B6J_10F_21 16 | AGTCTCTT IGVFSM2279TQMZ barcode-1 R A8 117_B6J_10M_21 17 | ATGCTGCT IGVFSM2279TQMZ barcode-1 T A8 117_B6J_10M_21 18 | TGCTGCTC IGVFSM7772DGMA barcode-1 R A9 118_B6J_10F_21 19 | CATTTACA IGVFSM7772DGMA barcode-1 T A9 118_B6J_10F_21 20 | GTATTTCC IGVFSM2279TQMZ barcode-1 R A10 117_B6J_10M_21 21 | ACTCGTAA IGVFSM2279TQMZ barcode-1 T A10 117_B6J_10M_21 22 | TTCCTGTG IGVFSM7772DGMA barcode-1 R A11 118_B6J_10F_21 23 | CCTTTGCA IGVFSM7772DGMA barcode-1 T A11 118_B6J_10F_21 24 | GCTGCTTC IGVFSM2279TQMZ barcode-1 R A12 117_B6J_10M_21 25 | ACTCCTGC IGVFSM2279TQMZ barcode-1 T A12 117_B6J_10M_21 26 | TATGTGTC IGVFSM3421UUOE barcode-1 R B1 106_CASTJ_10F_21 27 | ATTTGGCA IGVFSM3421UUOE barcode-1 T B1 106_CASTJ_10F_21 28 | CAATTCTC IGVFSM6969SYOD barcode-1 R B2 105_CASTJ_10M_21 29 | TTATTCTG IGVFSM6969SYOD barcode-1 T B2 105_CASTJ_10M_21 30 | TGGTCTCC IGVFSM3421UUOE barcode-1 R B3 106_CASTJ_10F_21 31 | TCATGCTC IGVFSM3421UUOE barcode-1 T B3 106_CASTJ_10F_21 32 | GCTCTTTA IGVFSM6969SYOD barcode-1 R B4 105_CASTJ_10M_21 33 | CATACTTC IGVFSM6969SYOD barcode-1 T B4 105_CASTJ_10M_21 34 | GCTGCATG IGVFSM3421UUOE barcode-1 R B5 106_CASTJ_10F_21 35 | CCGTTCTA IGVFSM3421UUOE barcode-1 T B5 106_CASTJ_10F_21 36 | ACTCATTT IGVFSM6969SYOD barcode-1 R B6 105_CASTJ_10M_21 37 | GCTTCATA IGVFSM6969SYOD barcode-1 T B6 105_CASTJ_10M_21 38 | AGTCTTGG IGVFSM3421UUOE barcode-1 R B7 106_CASTJ_10F_21 39 | CTCTGTGC IGVFSM3421UUOE barcode-1 T B7 106_CASTJ_10F_21 40 | GGTTCTTC IGVFSM6969SYOD barcode-1 R B8 105_CASTJ_10M_21 41 | CCCTTATA IGVFSM6969SYOD barcode-1 T B8 105_CASTJ_10M_21 42 | TCATGTTG IGVFSM3421UUOE barcode-1 R B9 106_CASTJ_10F_21 43 | ACTGCTCT IGVFSM3421UUOE barcode-1 T B9 106_CASTJ_10F_21 44 | ATTTTGCC IGVFSM6969SYOD barcode-1 R B10 105_CASTJ_10M_21 45 | CTCTAATC IGVFSM6969SYOD barcode-1 T B10 105_CASTJ_10M_21 46 | CTTCTGTA IGVFSM3421UUOE barcode-1 R B11 106_CASTJ_10F_21 47 | ACCCTTGC IGVFSM3421UUOE barcode-1 T B11 106_CASTJ_10F_21 48 | GTCCATCT IGVFSM6969SYOD barcode-1 R B12 105_CASTJ_10M_21 49 | ATCTTAGG IGVFSM6969SYOD barcode-1 T B12 105_CASTJ_10M_21 50 | GCTATCTC IGVFSM7094ZNGP barcode-1 R C1 120_B6J_10F_21 51 | CATGTCTC IGVFSM7094ZNGP barcode-1 T C1 120_B6J_10F_21 52 | TAGTTTCC IGVFSM5782OIYL barcode-1 R C2 119_B6J_10M_21 53 | TCATTGCA IGVFSM5782OIYL barcode-1 T C2 119_B6J_10M_21 54 | TCCATTAT IGVFSM7094ZNGP barcode-1 R C3 120_B6J_10F_21 55 | ACACCTTT IGVFSM7094ZNGP barcode-1 T C3 120_B6J_10F_21 56 | AGGATTAA IGVFSM5782OIYL barcode-1 R C4 119_B6J_10M_21 57 | AATTTCTC IGVFSM5782OIYL barcode-1 T C4 119_B6J_10M_21 58 | AATCTTTC IGVFSM7094ZNGP barcode-1 R C5 120_B6J_10F_21 59 | ATTCATGG IGVFSM7094ZNGP barcode-1 T C5 120_B6J_10F_21 60 | GTCATATG IGVFSM5782OIYL barcode-1 R C6 119_B6J_10M_21 61 | ACTTTACC IGVFSM5782OIYL barcode-1 T C6 119_B6J_10M_21 62 | GTGCTTCC IGVFSM7094ZNGP barcode-1 R C7 120_B6J_10F_21 63 | CTTCTAAC IGVFSM7094ZNGP barcode-1 T C7 120_B6J_10F_21 64 | ATGTGTTG IGVFSM5782OIYL barcode-1 R C8 119_B6J_10M_21 65 | CTATTTCA IGVFSM5782OIYL barcode-1 T C8 119_B6J_10M_21 66 | CCATCTTG IGVFSM7094ZNGP barcode-1 R C9 120_B6J_10F_21 67 | TCTCATGC IGVFSM7094ZNGP barcode-1 T C9 120_B6J_10F_21 68 | TACTGTCT IGVFSM5782OIYL barcode-1 R C10 119_B6J_10M_21 69 | ATCCTTAC IGVFSM5782OIYL barcode-1 T C10 119_B6J_10M_21 70 | TTCATCGC IGVFSM7094ZNGP barcode-1 R C11 120_B6J_10F_21 71 | TAAATATC IGVFSM7094ZNGP barcode-1 T C11 120_B6J_10F_21 72 | ACTGTGGG IGVFSM5782OIYL barcode-1 R C12 119_B6J_10M_21 73 | TTACCTGC IGVFSM5782OIYL barcode-1 T C12 119_B6J_10M_21 74 | TCTGTGCC IGVFSM0447EABS barcode-1 R D1 108_CASTJ_10F_21 75 | CACTTTCA IGVFSM0447EABS barcode-1 T D1 108_CASTJ_10F_21 76 | TCAATCTC IGVFSM5157GFSA barcode-1 R D2 107_CASTJ_10M_21 77 | CACCTTTA IGVFSM5157GFSA barcode-1 T D2 107_CASTJ_10M_21 78 | GTCCTCTG IGVFSM0447EABS barcode-1 R D3 108_CASTJ_10F_21 79 | CTGACTTC IGVFSM0447EABS barcode-1 T D3 108_CASTJ_10F_21 80 | TTACATTC IGVFSM5157GFSA barcode-1 R D4 107_CASTJ_10M_21 81 | CATTTGGA IGVFSM5157GFSA barcode-1 T D4 107_CASTJ_10M_21 82 | ATTCTGTC IGVFSM0447EABS barcode-1 R D5 108_CASTJ_10F_21 83 | GCTCTACT IGVFSM0447EABS barcode-1 T D5 108_CASTJ_10F_21 84 | TGTGTATG IGVFSM5157GFSA barcode-1 R D6 107_CASTJ_10M_21 85 | GTTACGTA IGVFSM5157GFSA barcode-1 T D6 107_CASTJ_10M_21 86 | TCCATTTG IGVFSM0447EABS barcode-1 R D7 108_CASTJ_10F_21 87 | CCTGTTGC IGVFSM0447EABS barcode-1 T D7 108_CASTJ_10F_21 88 | TTAGCTTC IGVFSM5157GFSA barcode-1 R D8 107_CASTJ_10M_21 89 | CTATCATC IGVFSM5157GFSA barcode-1 T D8 107_CASTJ_10M_21 90 | GTGCTTGA IGVFSM0447EABS barcode-1 R D9 108_CASTJ_10F_21 91 | GCTATCAT IGVFSM0447EABS barcode-1 T D9 108_CASTJ_10F_21 92 | GTTTGTGA IGVFSM5157GFSA barcode-1 R D10 107_CASTJ_10M_21 93 | ACATTCAT IGVFSM5157GFSA barcode-1 T D10 107_CASTJ_10M_21 94 | GAAATTAG IGVFSM0447EABS barcode-1 R D11 108_CASTJ_10F_21 95 | TTCGCTAC IGVFSM0447EABS barcode-1 T D11 108_CASTJ_10F_21 96 | GCAAATTC IGVFSM5157GFSA barcode-1 R D12 107_CASTJ_10M_21 97 | CATTCTAC IGVFSM5157GFSA barcode-1 T D12 107_CASTJ_10M_21 -------------------------------------------------------------------------------- /configs/config.yml: -------------------------------------------------------------------------------- 1 | ref: 2 | annot_link: https://api.data.igvf.org/reference-files/IGVFFI4777RDZK/@@download/IGVFFI4777RDZK.gtf.gz 3 | annot: ref/gencode.vM36.gtf.gz 4 | fa_link: https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa.gz 5 | fa: ref/mm39.fa.gz 6 | 7 | genome: 8 | link: 9 | WSBJ: https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCA_029233295.1/download?include_annotation_type=GENOME_FASTA&filename= 10 | PWKJ: https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCA_029233695.1/download?include_annotation_type=GENOME_FASTA&filename= 11 | NZOJ: https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCA_029233705.1/download?include_annotation_type=GENOME_FASTA&filename= 12 | NODJ: https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCA_029234005.1/download?include_annotation_type=GENOME_FASTA&filename= 13 | CASTJ: https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCA_029237265.1/download?include_annotation_type=GENOME_FASTA&filename= 14 | AJ: https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCA_029255665.1/download?include_annotation_type=GENOME_FASTA&filename= 15 | 129S1J: https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCA_029255695.1/download?include_annotation_type=GENOME_FASTA&filename= 16 | B6J: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M36/GRCm39.genome.fa.gz 17 | zip: ./{genotype}.zip 18 | dir: ./{genotype} 19 | fa: ref/genomes/{genotype}.fa.gz 20 | 21 | 22 | kallisto: 23 | t2g: ref/kallisto/c57bl6j.t2g 24 | ind: ref/kallisto/c57bl6j.idx 25 | fa: ref/kallisto/c57bl6j.cdna.fasta 26 | na: ref/kallisto/c57bl6j.nascent.fasta 27 | c1: ref/kallisto/c57bl6j.c1 28 | c2: ref/kallisto/c57bl6j.c2 29 | 30 | klue: 31 | fa: ref/klue/{mult_genotype_1}_{mult_genotype_2}.fa 32 | t2g: ref/klue/{mult_genotype_1}_{mult_genotype_2}.t2g 33 | ind: ref/klue/{mult_genotype_1}_{mult_genotype_2}.idx 34 | temp: ref/klue/{mult_genotype_1}_{mult_genotype_2} 35 | 36 | raw: 37 | fastq_r1: fastq/{plate}_{subpool}_{run}_{lane}_R1_001.fastq.gz 38 | fastq_r2: fastq/{plate}_{subpool}_{run}_{lane}_R2_001.fastq.gz 39 | 40 | 41 | kallisto: 42 | cgb: kallisto/{plate}/{subpool}/counts_unfiltered_modified/cells_x_genes.barcodes.txt 43 | cggn: kallisto/{plate}/{subpool}/counts_unfiltered_modified/cells_x_genes.genes.names.txt 44 | cgg: kallisto/{plate}/{subpool}/counts_unfiltered_modified/cells_x_genes.genes.txt 45 | adata: kallisto/{plate}/{subpool}/counts_unfiltered_modified/adata.h5ad 46 | mtx: kallisto/{plate}/{subpool}/counts_unfiltered_modified/cells_x_genes.total.mtx 47 | bus: kallisto/{plate}/{subpool}/output.bus 48 | bus_modified_unfilt: kallisto/{plate}/{subpool}/output_modified.unfiltered.bus 49 | bus_unfilt: kallisto/{plate}/{subpool}/output.unfiltered.bus 50 | run_info: kallisto/{plate}/{subpool}/run_info.json 51 | bc_info: kallisto/{plate}/{subpool}/inspect.json 52 | 53 | filt_adata: pipeline_output_kallisto/{plate}/{subpool}/filtered_adata.h5ad 54 | unfilt_adata: pipeline_output_kallisto/{plate}/{subpool}/unfiltered_adata.h5ad 55 | 56 | klue: 57 | cgb: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/counts_unfiltered_modified/cells_x_genes.barcodes.txt 58 | cggn: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/counts_unfiltered_modified/cells_x_genes.genes.names.txt 59 | cgg: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/counts_unfiltered_modified/cells_x_genes.genes.txt 60 | mtx: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/counts_unfiltered_modified/cells_x_genes.mtx 61 | adata: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/counts_unfiltered_modified/adata.h5ad 62 | bus: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/output.bus 63 | bus_modified_unfilt: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/output_modified.unfiltered.bus 64 | bus_unfilt: klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/output.unfiltered.bus 65 | unfilt_adata: pipeline_output_klue/{plate}/{subpool}/{mult_genotype_1}_{mult_genotype_2}/unfiltered_adata.h5ad 66 | # version with all genotypes 67 | genotype_counts: pipeline_output_klue/{plate}/{subpool}/genotype_counts.tsv 68 | 69 | cellbender: 70 | unfilt_h5: cellbender/{plate}/{subpool}/adata_denoised.h5 71 | filt_h5: cellbender/{plate}/{subpool}/adata_denoised_filtered.h5 72 | filt_adata: pipeline_output_cellbender/{plate}/{subpool}/filtered_adata_denoised.h5ad 73 | metrics: cellbender/{plate}/{subpool}/adata_denoised_metrics.csv 74 | metrics_copy: pipeline_output_cellbender/{plate}/{subpool}/adata_denoised_metrics.csv 75 | 76 | report: 77 | knee_df: pipeline_report/{plate}/{subpool}/knee_plot_df.csv 78 | report_df: pipeline_report/{plate}/{subpool}/report.csv 79 | cb_df: pipeline_report/{plate}/{subpool}/cellbender_settings.csv 80 | 81 | plate: 82 | adata: ./{plate}/adata.h5ad 83 | adata_raw_counts: ./{plate}/adata_raw_counts.h5ad 84 | adata_cb_counts: ./{plate}/adata_cellbender_counts.h5ad 85 | 86 | tissue: 87 | adata: ./{plate}/{tissue}/adata.h5ad 88 | adata_raw_counts: ./{plate}/{tissue}/adata_raw_counts.h5ad 89 | adata_cb_counts: ./{plate}/{tissue}/adata_cellbender_counts.h5ad 90 | -------------------------------------------------------------------------------- /configs/igvf_003_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/003_13A_S1_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/003_13A_S1_L001_R2_001.fastq.gz Subpool_EX S1 igvf_003 L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/003_13A_S1_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/003_13A_S1_L002_R2_001.fastq.gz Subpool_EX S1 igvf_003 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_004_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/004_13A_S2_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/004_13A_S2_L001_R2_001.fastq.gz Subpool_EX S2 igvf_004 L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/004_13A_S2_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/004_13A_S2_L002_R2_001.fastq.gz Subpool_EX S2 igvf_004 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_005_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/005_13A_S3_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/005_13A_S3_L001_R2_001.fastq.gz Subpool_EX S3 igvf_005 L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/005_13A_S3_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/005_13A_S3_L002_R2_001.fastq.gz Subpool_EX S3 igvf_005 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_007_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/007_13A_S4_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/007_13A_S4_L001_R2_001.fastq.gz Subpool_EX S4 igvf_007 L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/007_13A_S4_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/007_13A_S4_L002_R2_001.fastq.gz Subpool_EX S4 igvf_007 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_008_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L001_R2_001.fastq.gz Subpool_10 S9 igvf_008 L001 1 nova 200000 0.00005 67000 3 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L002_R2_001.fastq.gz Subpool_10 S9 igvf_008 L002 1 nova 200000 0.00005 67000 4 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L003_R2_001.fastq.gz Subpool_10 S9 igvf_008 L003 1 nova 200000 0.00005 67000 5 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_10_S9_L004_R2_001.fastq.gz Subpool_10 S9 igvf_008 L004 1 nova 200000 0.00005 67000 6 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L001_R2_001.fastq.gz Subpool_2 S1 igvf_008 L001 1 nova 150000 0.00005 67000 7 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L002_R2_001.fastq.gz Subpool_2 S1 igvf_008 L002 1 nova 150000 0.00005 67000 8 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L003_R2_001.fastq.gz Subpool_2 S1 igvf_008 L003 1 nova 150000 0.00005 67000 9 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_2_S1_L004_R2_001.fastq.gz Subpool_2 S1 igvf_008 L004 1 nova 150000 0.00005 67000 10 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L001_R2_001.fastq.gz Subpool_3 S2 igvf_008 L001 1 nova 200000 0.00005 67000 11 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L002_R2_001.fastq.gz Subpool_3 S2 igvf_008 L002 1 nova 200000 0.00005 67000 12 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L003_R2_001.fastq.gz Subpool_3 S2 igvf_008 L003 1 nova 200000 0.00005 67000 13 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_3_S2_L004_R2_001.fastq.gz Subpool_3 S2 igvf_008 L004 1 nova 200000 0.00005 67000 14 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L001_R2_001.fastq.gz Subpool_4 S3 igvf_008 L001 1 nova 200000 0.00005 67000 15 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L002_R2_001.fastq.gz Subpool_4 S3 igvf_008 L002 1 nova 200000 0.00005 67000 16 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L003_R2_001.fastq.gz Subpool_4 S3 igvf_008 L003 1 nova 200000 0.00005 67000 17 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_4_S3_L004_R2_001.fastq.gz Subpool_4 S3 igvf_008 L004 1 nova 200000 0.00005 67000 18 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L001_R2_001.fastq.gz Subpool_5 S4 igvf_008 L001 1 nova 200000 0.00005 67000 19 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L002_R2_001.fastq.gz Subpool_5 S4 igvf_008 L002 1 nova 200000 0.00005 67000 20 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L003_R2_001.fastq.gz Subpool_5 S4 igvf_008 L003 1 nova 200000 0.00005 67000 21 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_5_S4_L004_R2_001.fastq.gz Subpool_5 S4 igvf_008 L004 1 nova 200000 0.00005 67000 22 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L001_R2_001.fastq.gz Subpool_6 S5 igvf_008 L001 1 nova 200000 0.00005 67000 23 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L002_R2_001.fastq.gz Subpool_6 S5 igvf_008 L002 1 nova 200000 0.00005 67000 24 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L003_R2_001.fastq.gz Subpool_6 S5 igvf_008 L003 1 nova 200000 0.00005 67000 25 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_6_S5_L004_R2_001.fastq.gz Subpool_6 S5 igvf_008 L004 1 nova 200000 0.00005 67000 26 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L001_R2_001.fastq.gz Subpool_7 S6 igvf_008 L001 1 nova 200000 0.00005 67000 27 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L002_R2_001.fastq.gz Subpool_7 S6 igvf_008 L002 1 nova 200000 0.00005 67000 28 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L003_R2_001.fastq.gz Subpool_7 S6 igvf_008 L003 1 nova 200000 0.00005 67000 29 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_7_S6_L004_R2_001.fastq.gz Subpool_7 S6 igvf_008 L004 1 nova 200000 0.00005 67000 30 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L001_R2_001.fastq.gz Subpool_8 S7 igvf_008 L001 1 nova 150000 0.00005 67000 31 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L002_R2_001.fastq.gz Subpool_8 S7 igvf_008 L002 1 nova 150000 0.00005 67000 32 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L003_R2_001.fastq.gz Subpool_8 S7 igvf_008 L003 1 nova 150000 0.00005 67000 33 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_8_S7_L004_R2_001.fastq.gz Subpool_8 S7 igvf_008 L004 1 nova 150000 0.00005 67000 34 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L001_R2_001.fastq.gz Subpool_9 S8 igvf_008 L001 1 nova 200000 0.00005 67000 35 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L002_R2_001.fastq.gz Subpool_9 S8 igvf_008 L002 1 nova 200000 0.00005 67000 36 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L003_R2_001.fastq.gz Subpool_9 S8 igvf_008 L003 1 nova 200000 0.00005 67000 37 | /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008/nova1/Sublibrary_9_S8_L004_R2_001.fastq.gz Subpool_9 S8 igvf_008 L004 1 nova 200000 0.00005 67000 -------------------------------------------------------------------------------- /configs/igvf_008b_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L001_R2_001.fastq.gz Subpool_10 S9 igvf_008b L001 1 nova 200000 0.00005 67000 3 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L002_R2_001.fastq.gz Subpool_10 S9 igvf_008b L002 1 nova 200000 0.00005 67000 4 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L003_R2_001.fastq.gz Subpool_10 S9 igvf_008b L003 1 nova 200000 0.00005 67000 5 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_10_S9_L004_R2_001.fastq.gz Subpool_10 S9 igvf_008b L004 1 nova 200000 0.00005 67000 6 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L001_R2_001.fastq.gz Subpool_11 S10 igvf_008b L001 1 nova 200000 0.00005 67000 7 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L002_R2_001.fastq.gz Subpool_11 S10 igvf_008b L002 1 nova 200000 0.00005 67000 8 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L003_R2_001.fastq.gz Subpool_11 S10 igvf_008b L003 1 nova 200000 0.00005 67000 9 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_11_S10_L004_R2_001.fastq.gz Subpool_11 S10 igvf_008b L004 1 nova 200000 0.00005 67000 10 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L001_R2_001.fastq.gz Subpool_2 S1 igvf_008b L001 1 nova 200000 0.00005 67000 11 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L002_R2_001.fastq.gz Subpool_2 S1 igvf_008b L002 1 nova 200000 0.00005 67000 12 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L003_R2_001.fastq.gz Subpool_2 S1 igvf_008b L003 1 nova 200000 0.00005 67000 13 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_2_S1_L004_R2_001.fastq.gz Subpool_2 S1 igvf_008b L004 1 nova 200000 0.00005 67000 14 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L001_R2_001.fastq.gz Subpool_3 S2 igvf_008b L001 1 nova 200000 0.00005 67000 15 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L002_R2_001.fastq.gz Subpool_3 S2 igvf_008b L002 1 nova 200000 0.00005 67000 16 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L003_R2_001.fastq.gz Subpool_3 S2 igvf_008b L003 1 nova 200000 0.00005 67000 17 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_3_S2_L004_R2_001.fastq.gz Subpool_3 S2 igvf_008b L004 1 nova 200000 0.00005 67000 18 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L001_R2_001.fastq.gz Subpool_4 S3 igvf_008b L001 1 nova 200000 0.00005 67000 19 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L002_R2_001.fastq.gz Subpool_4 S3 igvf_008b L002 1 nova 200000 0.00005 67000 20 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L003_R2_001.fastq.gz Subpool_4 S3 igvf_008b L003 1 nova 200000 0.00005 67000 21 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_4_S3_L004_R2_001.fastq.gz Subpool_4 S3 igvf_008b L004 1 nova 200000 0.00005 67000 22 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L001_R2_001.fastq.gz Subpool_5 S4 igvf_008b L001 1 nova 200000 0.00005 67000 23 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L002_R2_001.fastq.gz Subpool_5 S4 igvf_008b L002 1 nova 200000 0.00005 67000 24 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L003_R2_001.fastq.gz Subpool_5 S4 igvf_008b L003 1 nova 200000 0.00005 67000 25 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_5_S4_L004_R2_001.fastq.gz Subpool_5 S4 igvf_008b L004 1 nova 200000 0.00005 67000 26 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L001_R2_001.fastq.gz Subpool_6 S5 igvf_008b L001 1 nova 200000 0.00005 67000 27 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L002_R2_001.fastq.gz Subpool_6 S5 igvf_008b L002 1 nova 200000 0.00005 67000 28 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L003_R2_001.fastq.gz Subpool_6 S5 igvf_008b L003 1 nova 200000 0.00005 67000 29 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_6_S5_L004_R2_001.fastq.gz Subpool_6 S5 igvf_008b L004 1 nova 200000 0.00005 67000 30 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L001_R2_001.fastq.gz Subpool_7 S6 igvf_008b L001 1 nova 200000 0.00005 67000 31 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L002_R2_001.fastq.gz Subpool_7 S6 igvf_008b L002 1 nova 200000 0.00005 67000 32 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L003_R2_001.fastq.gz Subpool_7 S6 igvf_008b L003 1 nova 200000 0.00005 67000 33 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_7_S6_L004_R2_001.fastq.gz Subpool_7 S6 igvf_008b L004 1 nova 200000 0.00005 67000 34 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L001_R2_001.fastq.gz Subpool_8 S7 igvf_008b L001 1 nova 200000 0.00005 67000 35 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L002_R2_001.fastq.gz Subpool_8 S7 igvf_008b L002 1 nova 200000 0.00005 67000 36 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L003_R2_001.fastq.gz Subpool_8 S7 igvf_008b L003 1 nova 200000 0.00005 67000 37 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_8_S7_L004_R2_001.fastq.gz Subpool_8 S7 igvf_008b L004 1 nova 200000 0.00005 67000 38 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L001_R2_001.fastq.gz Subpool_9 S8 igvf_008b L001 1 nova 200000 0.00005 67000 39 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L002_R2_001.fastq.gz Subpool_9 S8 igvf_008b L002 1 nova 200000 0.00005 67000 40 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L003_R2_001.fastq.gz Subpool_9 S8 igvf_008b L003 1 nova 200000 0.00005 67000 41 | /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_008b/nova1/Sublibrary_9_S8_L004_R2_001.fastq.gz Subpool_9 S8 igvf_008b L004 1 nova 200000 0.00005 67000 -------------------------------------------------------------------------------- /configs/igvf_008b_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/008B_13A_S1_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/008B_13A_S1_L001_R2_001.fastq.gz Subpool_EX S1 igvf_008b L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/008B_13A_S1_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/008B_13A_S1_L002_R2_001.fastq.gz Subpool_EX S1 igvf_008b L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_009_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/009_13A_S2_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/009_13A_S2_L001_R2_001.fastq.gz Subpool_EX S2 igvf_009 L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/009_13A_S2_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/009_13A_S2_L002_R2_001.fastq.gz Subpool_EX S2 igvf_009 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_010_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/010_13A_S3_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/010_13A_S3_L001_R2_001.fastq.gz Subpool_EX S3 igvf_010 L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/010_13A_S3_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/010_13A_S3_L002_R2_001.fastq.gz Subpool_EX S3 igvf_010 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_011_ex_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/011_13A_S4_L001_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/011_13A_S4_L001_R2_001.fastq.gz Subpool_EX S4 igvf_011 L001 1 next 40000 0.00005 13000 3 | /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/011_13A_S4_L002_R1_001.fastq.gz /dfs9/seyedam-lab/share/IGVF/igvf_ex/nextseq/011_13A_S4_L002_R2_001.fastq.gz Subpool_EX S4 igvf_011 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_012_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13A_S1_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13A_S1_L001_R2_001.fastq.gz Subpool_1 S1 igvf_012 L001 1 next 40000 0.00005 13000 3 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13A_S1_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13A_S1_L002_R2_001.fastq.gz Subpool_1 S1 igvf_012 L002 1 next 40000 0.00005 13000 4 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13B_S2_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13B_S2_L001_R2_001.fastq.gz Subpool_2 S2 igvf_012 L001 1 next 40000 0.00005 13000 5 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13B_S2_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13B_S2_L002_R2_001.fastq.gz Subpool_2 S2 igvf_012 L002 1 next 40000 0.00005 13000 6 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13C_S3_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13C_S3_L001_R2_001.fastq.gz Subpool_3 S3 igvf_012 L001 1 next 40000 0.00005 13000 7 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13C_S3_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13C_S3_L002_R2_001.fastq.gz Subpool_3 S3 igvf_012 L002 1 next 40000 0.00005 13000 8 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13D_S4_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13D_S4_L001_R2_001.fastq.gz Subpool_4 S4 igvf_012 L001 1 next 40000 0.00005 13000 9 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13D_S4_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13D_S4_L002_R2_001.fastq.gz Subpool_4 S4 igvf_012 L002 1 next 40000 0.00005 13000 10 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13E_S5_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13E_S5_L001_R2_001.fastq.gz Subpool_5 S5 igvf_012 L001 1 next 40000 0.00005 13000 11 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13E_S5_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13E_S5_L002_R2_001.fastq.gz Subpool_5 S5 igvf_012 L002 1 next 40000 0.00005 13000 12 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13F_S6_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13F_S6_L001_R2_001.fastq.gz Subpool_6 S6 igvf_012 L001 1 next 40000 0.00005 13000 13 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13F_S6_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13F_S6_L002_R2_001.fastq.gz Subpool_6 S6 igvf_012 L002 1 next 40000 0.00005 13000 14 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13G_S7_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13G_S7_L001_R2_001.fastq.gz Subpool_7 S7 igvf_012 L001 1 next 40000 0.00005 13000 15 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13G_S7_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13G_S7_L002_R2_001.fastq.gz Subpool_7 S7 igvf_012 L002 1 next 40000 0.00005 13000 16 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13H_S8_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13H_S8_L001_R2_001.fastq.gz Subpool_8 S8 igvf_012 L001 1 next 40000 0.00005 13000 17 | /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13H_S8_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_012/nextseq/012_13H_S8_L002_R2_001.fastq.gz Subpool_8 S8 igvf_012 L002 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_013_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L001_R2_001.fastq.gz Subpool_UDI02 S1 igvf_013 L001 1 nova 200000 0.00005 67000 3 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L002_R2_001.fastq.gz Subpool_UDI02 S1 igvf_013 L002 1 nova 200000 0.00005 67000 4 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L003_R2_001.fastq.gz Subpool_UDI02 S1 igvf_013 L003 1 nova 200000 0.00005 67000 5 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_2_S1_L004_R2_001.fastq.gz Subpool_UDI02 S1 igvf_013 L004 1 nova 200000 0.00005 67000 6 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L001_R2_001.fastq.gz Subpool_UDI03 S2 igvf_013 L001 1 nova 200000 0.00005 67000 7 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L002_R2_001.fastq.gz Subpool_UDI03 S2 igvf_013 L002 1 nova 200000 0.00005 67000 8 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L003_R2_001.fastq.gz Subpool_UDI03 S2 igvf_013 L003 1 nova 200000 0.00005 67000 9 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_3_S2_L004_R2_001.fastq.gz Subpool_UDI03 S2 igvf_013 L004 1 nova 200000 0.00005 67000 10 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L001_R2_001.fastq.gz Subpool_UDI04 S3 igvf_013 L001 1 nova 200000 0.00005 67000 11 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L002_R2_001.fastq.gz Subpool_UDI04 S3 igvf_013 L002 1 nova 200000 0.00005 67000 12 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L003_R2_001.fastq.gz Subpool_UDI04 S3 igvf_013 L003 1 nova 200000 0.00005 67000 13 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_4_S3_L004_R2_001.fastq.gz Subpool_UDI04 S3 igvf_013 L004 1 nova 200000 0.00005 67000 14 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L001_R2_001.fastq.gz Subpool_UDI05 S4 igvf_013 L001 1 nova 200000 0.00005 67000 15 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L002_R2_001.fastq.gz Subpool_UDI05 S4 igvf_013 L002 1 nova 200000 0.00005 67000 16 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L003_R2_001.fastq.gz Subpool_UDI05 S4 igvf_013 L003 1 nova 200000 0.00005 67000 17 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_5_S4_L004_R2_001.fastq.gz Subpool_UDI05 S4 igvf_013 L004 1 nova 200000 0.00005 67000 18 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L001_R2_001.fastq.gz Subpool_UDI06 S5 igvf_013 L001 1 nova 200000 0.00005 67000 19 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L002_R2_001.fastq.gz Subpool_UDI06 S5 igvf_013 L002 1 nova 200000 0.00005 67000 20 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L003_R2_001.fastq.gz Subpool_UDI06 S5 igvf_013 L003 1 nova 200000 0.00005 67000 21 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_6_S5_L004_R2_001.fastq.gz Subpool_UDI06 S5 igvf_013 L004 1 nova 200000 0.00005 67000 22 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L001_R2_001.fastq.gz Subpool_UDI07 S6 igvf_013 L001 1 nova 200000 0.00005 67000 23 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L002_R2_001.fastq.gz Subpool_UDI07 S6 igvf_013 L002 1 nova 200000 0.00005 67000 24 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L003_R2_001.fastq.gz Subpool_UDI07 S6 igvf_013 L003 1 nova 200000 0.00005 67000 25 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_7_S6_L004_R2_001.fastq.gz Subpool_UDI07 S6 igvf_013 L004 1 nova 200000 0.00005 67000 26 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L001_R2_001.fastq.gz Subpool_UDI08 S7 igvf_013 L001 1 nova 200000 0.00005 67000 27 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L002_R2_001.fastq.gz Subpool_UDI08 S7 igvf_013 L002 1 nova 200000 0.00005 67000 28 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L003_R2_001.fastq.gz Subpool_UDI08 S7 igvf_013 L003 1 nova 200000 0.00005 67000 29 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_8_S7_L004_R2_001.fastq.gz Subpool_UDI08 S7 igvf_013 L004 1 nova 200000 0.00005 67000 30 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L001_R2_001.fastq.gz Subpool_UDI09 S8 igvf_013 L001 1 nova 200000 0.00005 67000 31 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L002_R2_001.fastq.gz Subpool_UDI09 S8 igvf_013 L002 1 nova 200000 0.00005 67000 32 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L003_R2_001.fastq.gz Subpool_UDI09 S8 igvf_013 L003 1 nova 200000 0.00005 67000 33 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_9_S8_L004_R2_001.fastq.gz Subpool_UDI09 S8 igvf_013 L004 1 nova 200000 0.00005 67000 34 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L001_R2_001.fastq.gz Subpool_UDI10 S9 igvf_013 L001 1 nova 200000 0.00005 67000 35 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L002_R2_001.fastq.gz Subpool_UDI10 S9 igvf_013 L002 1 nova 200000 0.00005 67000 36 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L003_R2_001.fastq.gz Subpool_UDI10 S9 igvf_013 L003 1 nova 200000 0.00005 67000 37 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_10_S9_L004_R2_001.fastq.gz Subpool_UDI10 S9 igvf_013 L004 1 nova 200000 0.00005 67000 38 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L001_R2_001.fastq.gz Subpool_UDI11 S10 igvf_013 L001 1 nova 200000 0.00005 67000 39 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L002_R2_001.fastq.gz Subpool_UDI11 S10 igvf_013 L002 1 nova 200000 0.00005 67000 40 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L003_R2_001.fastq.gz Subpool_UDI11 S10 igvf_013 L003 1 nova 200000 0.00005 67000 41 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_11_S10_L004_R2_001.fastq.gz Subpool_UDI11 S10 igvf_013 L004 1 nova 200000 0.00005 67000 42 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L001_R2_001.fastq.gz Subpool_UDI12 S11 igvf_013 L001 1 nova 200000 0.00005 67000 43 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L002_R2_001.fastq.gz Subpool_UDI12 S11 igvf_013 L002 1 nova 200000 0.00005 67000 44 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L003_R2_001.fastq.gz Subpool_UDI12 S11 igvf_013 L003 1 nova 200000 0.00005 67000 45 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_12_S11_L004_R2_001.fastq.gz Subpool_UDI12 S11 igvf_013 L004 1 nova 200000 0.00005 67000 46 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L001_R2_001.fastq.gz Subpool_UDI13 S12 igvf_013 L001 1 nova 200000 0.00005 67000 47 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L002_R2_001.fastq.gz Subpool_UDI13 S12 igvf_013 L002 1 nova 200000 0.00005 67000 48 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L003_R2_001.fastq.gz Subpool_UDI13 S12 igvf_013 L003 1 nova 200000 0.00005 67000 49 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_13_S12_L004_R2_001.fastq.gz Subpool_UDI13 S12 igvf_013 L004 1 nova 200000 0.00005 67000 50 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L001_R2_001.fastq.gz Subpool_UDI14 S13 igvf_013 L001 1 nova 200000 0.00005 67000 51 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L002_R2_001.fastq.gz Subpool_UDI14 S13 igvf_013 L002 1 nova 200000 0.00005 67000 52 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L003_R2_001.fastq.gz Subpool_UDI14 S13 igvf_013 L003 1 nova 200000 0.00005 67000 53 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_14_S13_L004_R2_001.fastq.gz Subpool_UDI14 S13 igvf_013 L004 1 nova 200000 0.00005 67000 54 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L001_R2_001.fastq.gz Subpool_UDI15 S14 igvf_013 L001 1 nova 200000 0.00005 67000 55 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L002_R2_001.fastq.gz Subpool_UDI15 S14 igvf_013 L002 1 nova 200000 0.00005 67000 56 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L003_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L003_R2_001.fastq.gz Subpool_UDI15 S14 igvf_013 L003 1 nova 200000 0.00005 67000 57 | /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L004_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_013/nova1/Sublibrary_15_S14_L004_R2_001.fastq.gz Subpool_UDI15 S14 igvf_013 L004 1 nova 200000 0.00005 67000 -------------------------------------------------------------------------------- /configs/igvf_014_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13A_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13A_R2.fastq.gz Subpool_UDI17 S1 igvf_014 L001 1 next 40000 0.00005 13000 3 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13B_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13B_R2.fastq.gz Subpool_UDI18 S2 igvf_014 L001 1 next 40000 0.00005 13000 4 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13C_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13C_R2.fastq.gz Subpool_UDI19 S3 igvf_014 L001 1 next 40000 0.00005 13000 5 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13D_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13D_R2.fastq.gz Subpool_UDI20 S4 igvf_014 L001 1 next 40000 0.00005 13000 6 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13E_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13E_R2.fastq.gz Subpool_UDI21 S5 igvf_014 L001 1 next 40000 0.00005 13000 7 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13F_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13F_R2.fastq.gz Subpool_UDI22 S6 igvf_014 L001 1 next 40000 0.00005 13000 8 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13G_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13G_R2.fastq.gz Subpool_UDI23 S7 igvf_014 L001 1 next 40000 0.00005 13000 9 | /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13H_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_014/nextseq/014_13H_R2.fastq.gz Subpool_UDI24 S8 igvf_014 L001 1 next 40000 0.00005 13000 -------------------------------------------------------------------------------- /configs/igvf_015_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool plate lane run platform droplets_included 2 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67C_S1_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67C_S1_L001_R2_001.fastq.gz Subpool_UDI25 igvf_015 L001 1 next 200000 3 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67C_S1_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67C_S1_L002_R2_001.fastq.gz Subpool_UDI25 igvf_015 L002 1 next 200000 4 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67D_S2_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67D_S2_L001_R2_001.fastq.gz Subpool_UDI26 igvf_015 L001 1 next 200000 5 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67D_S2_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67D_S2_L002_R2_001.fastq.gz Subpool_UDI26 igvf_015 L002 1 next 200000 6 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67E_S1_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67E_S1_L001_R2_001.fastq.gz Subpool_UDI27 igvf_015 L001 1 next 150000 7 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67E_S1_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67E_S1_L002_R2_001.fastq.gz Subpool_UDI27 igvf_015 L002 1 next 150000 8 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67F_S2_L001_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67F_S2_L001_R2_001.fastq.gz Subpool_UDI28 igvf_015 L001 1 next 200000 9 | /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67F_S2_L002_R1_001.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_015/nextseq/015_67F_S2_L002_R2_001.fastq.gz Subpool_UDI28 igvf_015 L002 1 next 200000 -------------------------------------------------------------------------------- /configs/igvf_024a_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool plate lane run platform droplets_included learning_rate expected_cells 2 | /share/crsp/lab/seyedam/share/igvf_splitseq/igvf_024/igvf_024a/fastq/24A_67C_S1_R1_001.fastq.gz /share/crsp/lab/seyedam/share/igvf_splitseq/igvf_024/igvf_024a/fastq/24A_67C_S1_R2_001.fastq.gz Subpool_UDI35 igvf_024a L001 1 next 200000 0.00005 67000 3 | /share/crsp/lab/seyedam/share/igvf_splitseq/igvf_024/igvf_024a/fastq/24A_67D_S2_R1_001.fastq.gz /share/crsp/lab/seyedam/share/igvf_splitseq/igvf_024/igvf_024a/fastq/24A_67D_S2_R2_001.fastq.gz Subpool_UDI36 igvf_024a L001 1 next 200000 0.00005 67000 -------------------------------------------------------------------------------- /configs/igvf_b01_config.tsv: -------------------------------------------------------------------------------- 1 | fastq fastq_r2 subpool sample plate lane run platform droplets_included learning_rate expected_cells 2 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13A_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13A_R2.fastq.gz Subpool_1 S1 igvf_b01 L001 1 next 40000 1.00E-04 None 3 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13B_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13B_R2.fastq.gz Subpool_2 S2 igvf_b01 L001 1 next 40000 1.00E-04 None 4 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13C_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13C_R2.fastq.gz Subpool_3 S3 igvf_b01 L001 1 next 40000 1.00E-04 None 5 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13D_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13D_R2.fastq.gz Subpool_4 S4 igvf_b01 L001 1 next 40000 1.00E-04 None 6 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13E_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13E_R2.fastq.gz Subpool_5 S5 igvf_b01 L001 1 next 40000 1.00E-04 None 7 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13F_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13F_R2.fastq.gz Subpool_6 S6 igvf_b01 L001 1 next 40000 1.00E-04 None 8 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13G_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13G_R2.fastq.gz Subpool_7 S7 igvf_b01 L001 1 next 40000 1.00E-04 None 9 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13H_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next1/B01_13H_R2.fastq.gz Subpool_8 S8 igvf_b01 L001 1 next 40000 1.00E-04 None 10 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13A_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13A_R2.fastq.gz Subpool_1 S1 igvf_b01 L001 2 next 40000 1.00E-04 None 11 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13B_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13B_R2.fastq.gz Subpool_2 S2 igvf_b01 L001 2 next 40000 1.00E-04 None 12 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13C_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13C_R2.fastq.gz Subpool_3 S3 igvf_b01 L001 2 next 40000 1.00E-04 None 13 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13D_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13D_R2.fastq.gz Subpool_4 S4 igvf_b01 L001 2 next 40000 1.00E-04 None 14 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13E_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13E_R2.fastq.gz Subpool_5 S5 igvf_b01 L001 2 next 40000 1.00E-04 None 15 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13F_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13F_R2.fastq.gz Subpool_6 S6 igvf_b01 L001 2 next 40000 1.00E-04 None 16 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13G_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13G_R2.fastq.gz Subpool_7 S7 igvf_b01 L001 2 next 40000 1.00E-04 None 17 | /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13H_R1.fastq.gz /dfs7/samlab/seyedam/IGVF/igvf_b01/next2/B01_13H_R2.fastq.gz Subpool_8 S8 igvf_b01 L001 2 next 40000 1.00E-04 None -------------------------------------------------------------------------------- /snakemake/envs/kb_env.yaml: -------------------------------------------------------------------------------- 1 | name: kb_env 2 | channels: 3 | - conda-forge 4 | - r 5 | - defaults 6 | - bioconda 7 | dependencies: 8 | - _libgcc_mutex=0.1=conda_forge 9 | - _openmp_mutex=4.5=2_gnu 10 | - aioeasywebdav=2.4.0=py39hf3d152e_1001 11 | - aiohappyeyeballs=2.4.2=pyhd8ed1ab_0 12 | - aiohttp=3.10.8=py39h8cd3c5a_0 13 | - aiosignal=1.3.1=pyhd8ed1ab_0 14 | - amply=0.1.6=pyhd8ed1ab_0 15 | - appdirs=1.4.4=pyh9f0ad1d_0 16 | - async-timeout=4.0.3=pyhd8ed1ab_0 17 | - attmap=0.13.2=pyhd8ed1ab_0 18 | - attrs=24.2.0=pyh71513ae_0 19 | - bcrypt=4.2.0=py39he612d8f_1 20 | - boto3=1.35.29=pyhd8ed1ab_0 21 | - botocore=1.35.29=pyge38_1234567_0 22 | - brotli-python=1.1.0=py39hf88036b_2 23 | - bzip2=1.0.8=h4bc722e_7 24 | - c-ares=1.33.1=heb4867d_0 25 | - ca-certificates=2024.8.30=hbcca054_0 26 | - cachetools=5.5.0=pyhd8ed1ab_0 27 | - certifi=2024.8.30=pyhd8ed1ab_0 28 | - cffi=1.14.6=py39he32792d_0 29 | - charset-normalizer=3.3.2=pyhd8ed1ab_0 30 | - coin-or-cbc=2.10.12=h8b142ea_1 31 | - coin-or-cgl=0.60.7=h516709c_0 32 | - coin-or-clp=1.17.8=h1ee7a9c_0 33 | - coin-or-osi=0.108.10=haf5fa05_0 34 | - coin-or-utils=2.11.11=hee58242_0 35 | - coincbc=2.10.12=1_metapackage 36 | - colorama=0.4.6=pyhd8ed1ab_0 37 | - configargparse=1.7=pyhd8ed1ab_0 38 | - connection_pool=0.0.3=pyhd3deb0d_0 39 | - cryptography=39.0.0=py39hd598818_0 40 | - datrie=0.8.2=py39h8cd3c5a_8 41 | - defusedxml=0.7.1=pyhd8ed1ab_0 42 | - docutils=0.21.2=pyhd8ed1ab_0 43 | - dpath=2.2.0=pyha770c72_0 44 | - dropbox=12.0.2=pyhd8ed1ab_0 45 | - eido=0.2.2=pyhd8ed1ab_0 46 | - exceptiongroup=1.2.2=pyhd8ed1ab_0 47 | - filechunkio=1.8=py_2 48 | - frozenlist=1.4.1=py39h8cd3c5a_1 49 | - ftputil=5.1.0=pyhd8ed1ab_0 50 | - gitdb=4.0.11=pyhd8ed1ab_0 51 | - gitpython=3.1.43=pyhd8ed1ab_0 52 | - google-api-core=2.20.0=pyhd8ed1ab_0 53 | - google-api-python-client=2.147.0=pyhd8ed1ab_0 54 | - google-auth=2.35.0=pyhff2d567_0 55 | - google-auth-httplib2=0.2.0=pyhd8ed1ab_0 56 | - google-cloud-core=2.4.1=pyhd8ed1ab_0 57 | - google-cloud-storage=2.18.2=pyhff2d567_0 58 | - google-crc32c=1.1.2=py39h2cad9fb_6 59 | - google-resumable-media=2.7.2=pyhd8ed1ab_1 60 | - googleapis-common-protos=1.65.0=pyhd8ed1ab_0 61 | - grpcio=1.51.1=py39h712372c_0 62 | - httplib2=0.22.0=pyhd8ed1ab_0 63 | - humanfriendly=10.0=pyhd8ed1ab_6 64 | - idna=3.10=pyhd8ed1ab_0 65 | - importlib_resources=6.4.5=pyhd8ed1ab_0 66 | - iniconfig=2.0.0=pyhd8ed1ab_0 67 | - jinja2=3.1.4=pyhd8ed1ab_0 68 | - jmespath=1.0.1=pyhd8ed1ab_0 69 | - jsonschema=4.23.0=pyhd8ed1ab_0 70 | - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0 71 | - jupyter_core=5.7.2=pyh31011fe_1 72 | - ld_impl_linux-64=2.43=h712a8e2_1 73 | - libabseil=20220623.0=cxx17_h05df665_6 74 | - libblas=3.9.0=24_linux64_openblas 75 | - libcblas=3.9.0=24_linux64_openblas 76 | - libcrc32c=1.1.2=h9c3ff4c_0 77 | - libffi=3.3=h58526e2_2 78 | - libgcc=14.1.0=h77fa898_1 79 | - libgcc-ng=14.1.0=h69a702a_1 80 | - libgfortran=14.1.0=h69a702a_1 81 | - libgfortran-ng=14.1.0=h69a702a_1 82 | - libgfortran5=14.1.0=hc5f4f2c_1 83 | - libgomp=14.1.0=h77fa898_1 84 | - libgrpc=1.51.1=h05bd8bd_0 85 | - liblapack=3.9.0=24_linux64_openblas 86 | - liblapacke=3.9.0=24_linux64_openblas 87 | - libopenblas=0.3.27=pthreads_hac2b453_1 88 | - libprotobuf=3.21.12=hfc55251_2 89 | - libsodium=1.0.20=h4ab18f5_0 90 | - libsqlite=3.46.0=hde9e2c9_0 91 | - libstdcxx=14.1.0=hc0a3c3a_1 92 | - libstdcxx-ng=14.1.0=h4852527_1 93 | - libzlib=1.2.13=h4ab18f5_6 94 | - logmuse=0.2.6=pyh8c360ce_0 95 | - markdown-it-py=3.0.0=pyhd8ed1ab_0 96 | - markupsafe=2.1.5=py39h8cd3c5a_1 97 | - mdurl=0.1.2=pyhd8ed1ab_0 98 | - multidict=6.1.0=py39h8cd3c5a_0 99 | - nbformat=5.10.4=pyhd8ed1ab_0 100 | - ncurses=6.5=he02047a_1 101 | - oauth2client=4.1.3=py_0 102 | - openssl=1.1.1w=hd590300_0 103 | - packaging=24.1=pyhd8ed1ab_0 104 | - paramiko=3.5.0=pyhd8ed1ab_0 105 | - peppy=0.40.6=pyhd8ed1ab_0 106 | - pip=24.2=pyh8b19718_1 107 | - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1 108 | - plac=1.4.3=pyhd8ed1ab_0 109 | - platformdirs=4.3.6=pyhd8ed1ab_0 110 | - pluggy=1.5.0=pyhd8ed1ab_0 111 | - ply=3.11=pyhd8ed1ab_2 112 | - prettytable=3.11.0=pyhd8ed1ab_0 113 | - proto-plus=1.23.0=pyhd8ed1ab_0 114 | - protobuf=4.21.12=py39h227be39_0 115 | - psutil=6.0.0=py39h8cd3c5a_1 116 | - pulp=2.7.0=py39hf3d152e_1 117 | - pyasn1=0.6.1=pyhd8ed1ab_1 118 | - pyasn1-modules=0.4.1=pyhd8ed1ab_0 119 | - pycparser=2.22=pyhd8ed1ab_0 120 | - pygments=2.18.0=pyhd8ed1ab_0 121 | - pynacl=1.5.0=py39h8cd3c5a_4 122 | - pyopenssl=23.2.0=pyhd8ed1ab_1 123 | - pyparsing=3.1.4=pyhd8ed1ab_0 124 | - pysftp=0.2.9=py_1 125 | - pysocks=1.7.1=pyha2e5f31_6 126 | - pytest=8.3.3=pyhd8ed1ab_0 127 | - python=3.9.0=hffdb5ce_5_cpython 128 | - python-fastjsonschema=2.20.0=pyhd8ed1ab_0 129 | - python-irodsclient=2.1.0=pyhd8ed1ab_0 130 | - python-tzdata=2024.2=pyhd8ed1ab_0 131 | - python_abi=3.9=5_cp39 132 | - pyu2f=0.1.5=pyhd8ed1ab_0 133 | - pyyaml=6.0.2=py39h8cd3c5a_1 134 | - re2=2022.06.01=h27087fc_1 135 | - readline=8.2=h8228510_1 136 | - referencing=0.35.1=pyhd8ed1ab_0 137 | - requests=2.32.3=pyhd8ed1ab_0 138 | - reretry=0.11.8=pyhd8ed1ab_0 139 | - rich=13.8.1=pyhd8ed1ab_0 140 | - rpds-py=0.20.0=py39he612d8f_1 141 | - rsa=4.9=pyhd8ed1ab_0 142 | - s3transfer=0.10.2=pyhd8ed1ab_0 143 | - setuptools=75.1.0=pyhd8ed1ab_0 144 | - six=1.16.0=pyh6c4a22f_0 145 | - slacker=0.14.0=py_0 146 | - smart_open=7.0.4=pyhd8ed1ab_0 147 | - smmap=5.0.0=pyhd8ed1ab_0 148 | - snakemake=7.32.0=hdfd78af_0 149 | - snakemake-minimal=7.32.0=pyhdfd78af_0 150 | - sqlite=3.46.0=h6d4b2fc_0 151 | - stone=3.3.2=pyhd8ed1ab_0 152 | - stopit=1.1.2=py_0 153 | - tabulate=0.9.0=pyhd8ed1ab_1 154 | - throttler=1.2.2=pyhd8ed1ab_0 155 | - tk=8.6.13=noxft_h4845f30_101 156 | - tomli=2.0.1=pyhd8ed1ab_0 157 | - toposort=1.10=pyhd8ed1ab_0 158 | - traitlets=5.14.3=pyhd8ed1ab_0 159 | - typing-extensions=4.12.2=hd8ed1ab_0 160 | - typing_extensions=4.12.2=pyha770c72_0 161 | - tzdata=2024a=h8827d51_1 162 | - ubiquerg=0.8.0=pyhd8ed1ab_0 163 | - uritemplate=4.1.1=pyhd8ed1ab_0 164 | - urllib3=1.26.19=pyhd8ed1ab_0 165 | - veracitools=0.1.3=py_0 166 | - wcwidth=0.2.13=pyhd8ed1ab_0 167 | - wheel=0.44.0=pyhd8ed1ab_0 168 | - wrapt=1.16.0=py39h8cd3c5a_1 169 | - xz=5.2.6=h166bdaf_0 170 | - yaml=0.2.5=h7f98852_2 171 | - yarl=1.13.1=py39h8cd3c5a_0 172 | - yte=1.5.4=pyha770c72_0 173 | - zipp=3.20.2=pyhd8ed1ab_0 174 | - zlib=1.2.13=h4ab18f5_6 175 | - pip: 176 | - anndata==0.10.9 177 | - annotated-types==0.7.0 178 | - array-api-compat==1.8 179 | - beautifulsoup4==4.12.3 180 | - bleach==6.1.0 181 | - click==8.1.7 182 | - coloredlogs==15.0.1 183 | - contourpy==1.3.0 184 | - cycler==0.12.1 185 | - fonttools==4.54.1 186 | - get-annotations==0.1.2 187 | - h5py==3.12.1 188 | - importlib-metadata==8.5.0 189 | - joblib==1.4.2 190 | - jupyter-client==8.6.3 191 | - jupyterlab-pygments==0.3.0 192 | - kb-python==0.28.2 193 | - kiwisolver==1.4.7 194 | - legacy-api-wrap==1.4 195 | - llvmlite==0.43.0 196 | - loompy==3.0.7 197 | - matplotlib==3.9.2 198 | - mistune==3.0.2 199 | - natsort==8.4.0 200 | - nbclient==0.10.0 201 | - nbconvert==7.16.4 202 | - networkx==3.2.1 203 | - ngs-tools==1.8.5 204 | - numba==0.60.0 205 | - numpy==1.26.4 206 | - numpy-groupies==0.11.2 207 | - pandas==1.5.3 208 | - pandocfilters==1.5.1 209 | - patsy==0.5.6 210 | - pillow==10.4.0 211 | - plotly==5.24.1 212 | - pydantic==2.9.2 213 | - pydantic-core==2.23.4 214 | - pynndescent==0.5.13 215 | - pysam==0.22.1 216 | - python-dateutil==2.9.0.post0 217 | - pytz==2024.2 218 | - pyzmq==26.2.0 219 | - scanpy==1.10.3 220 | - scikit-learn==1.5.2 221 | - scipy==1.13.1 222 | - seaborn==0.13.2 223 | - session-info==1.0.0 224 | - shellingham==1.5.4 225 | - shortuuid==1.0.13 226 | - soupsieve==2.6 227 | - statsmodels==0.14.3 228 | - stdlib-list==0.10.0 229 | - tenacity==9.0.0 230 | - threadpoolctl==3.5.0 231 | - tinycss2==1.3.0 232 | - tornado==6.4.1 233 | - tqdm==4.66.5 234 | - typer==0.12.5 235 | - umap-learn==0.5.6 236 | - webencodings==0.5.1 237 | prefix: /data/homezvol3/erebboah/miniconda3/envs/kb_env 238 | -------------------------------------------------------------------------------- /uci_parse_workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mortazavilab/parse_pipeline/b156bbd63fb21acfb8e1c65c51f14e0ab49a6b78/uci_parse_workflow.png --------------------------------------------------------------------------------