├── scholarly-review.md ├── README.md └── LICENSE /scholarly-review.md: -------------------------------------------------------------------------------- 1 | ## Scholarly Review Resources 2 | 3 | #### Ideas in Ecology and Evolution 4 | 5 | - http://library.queensu.ca/ojs/index.php/IEE 6 | - Example paper: https://github.com/weecology/data-sharing-paper 7 | - Another work in progress with R and markdown: https://github.com/SimonGoring/neotoma_paper 8 | 9 | __Ideas for writing papers on GitHub__ 10 | 11 | Authors work on branches and accept pull requests. If code is involved, then there is the possibility of using Travis-CI to only accept pull requests that pass builds. 12 | 13 | This process also allows for peer review while papers are in progress. 14 | 15 | Pandoc: http://johnmacfarlane.net/pandoc/ is a fantastic tool that can be combined with `Make` to create documents in any output format including docx, pdf, latex. 16 | 17 | Note: If you work with R, RStudio's IDE integrates Pandoc so you wont need to install separately. You can go from code to paper in one click. 18 | 19 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | ## Introduction to GitHub for Collaborating and Academic Publishing 2 | 3 | ### Installing Git 4 | - http://git-scm.com/downloads 5 | - https://windows.github.com/ 6 | - https://mac.github.com/ 7 | 8 | ### Resources for learning Git and GitHub: 9 | 10 | #### Video/interactive resources 11 | - [Try Git](http://try.github.com) 12 | - [Git-It](https://github.com/jlord/git-it) 13 | - [Git and GitHub foundations](https://www.youtube.com/watch?v=yyLiplDQtf0&list=UUP7RrmoueENv9TZts3HXXtw) 14 | - [GitHub guides videos](https://www.youtube.com/user/GitHubGuides) 15 | 16 | #### Text/offline stuff 17 | 18 | ##### GitHub Guides 19 | * https://guides.github.com/ 20 | * https://guides.github.com/activities/hello-world/ 21 | * https://guides.github.com/activities/contributing-to-open-source/ 22 | * https://guides.github.com/activities/citable-code/ 23 | 24 | ##### Free books 25 | - Pro Git: http://git-scm.com/book/en/v2 26 | 27 | ### Authoring Tools 28 | 29 | * [writeLaTeX](https://www.writelatex.com/) 30 | * [ShareLaTeX](https://www.sharelatex.com/) 31 | * [Authorea](https://www.authorea.com/) 32 | * [IPython Notebook](http://ipython.org/notebook.html) 33 | * [Markdown](https://help.github.com/articles/markdown-basics/) 34 | * [GitHub Pages](https://pages.github.com/) 35 | * [Jekyll](https://github.com/jekyll/jekyll) 36 | * [Jekyll on GitHub](https://help.github.com/articles/using-jekyll-with-pages/) 37 | 38 | ### Clever things 39 | * [IPython nbviewer](http://nbviewer.ipython.org/) 40 | * [ShareLaTeX autocompiler](https://www.sharelatex.com/github/) 41 | * [Using Travis-CI to build LaTeX projects](https://gist.github.com/snim2/9160862) 42 | * [GH Publisher](https://github.com/ewanmellor/gh-publisher) 43 | * [SciPy Conference proceedings](https://github.com/scipy-conference/scipy_proceedings) 44 | 45 | ### Free Hosting with GitHub Pages 46 | * [GitHub Pages](http://pages.github.com) 47 | * [GitHub Pages default themes](https://github.com/blog/1081-instantly-beautiful-project-pages) 48 | * [Jekyll Documentation](http://jekyllrb.com) 49 | * [Forkable Jekyll setup and theme, Hyde](http://hyde.getpoole.com) 50 | * [Fork-n-Go, forkable static sites](http://jlord.github.io/forkngo) 51 | 52 | ### Fun things/something completely different 53 | 54 | How can we visualise Git operations in a different way? Possible ideas: 55 | - Animated post-it notes 56 | - As a dance ([Merge-sort with Transylvanian-saxon (German) folk dance](https://www.youtube.com/watch?v=XaqR3G_NVoo)) 57 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | CC0 1.0 Universal 2 | 3 | Statement of Purpose 4 | 5 | The laws of most jurisdictions throughout the world automatically confer 6 | exclusive Copyright and Related Rights (defined below) upon the creator and 7 | subsequent owner(s) (each and all, an "owner") of an original work of 8 | authorship and/or a database (each, a "Work"). 9 | 10 | Certain owners wish to permanently relinquish those rights to a Work for the 11 | purpose of contributing to a commons of creative, cultural and scientific 12 | works ("Commons") that the public can reliably and without fear of later 13 | claims of infringement build upon, modify, incorporate in other works, reuse 14 | and redistribute as freely as possible in any form whatsoever and for any 15 | purposes, including without limitation commercial purposes. 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