├── 01_targets-processing.sh ├── 02_coverage-count.sh ├── 03_OFF-PEAK.R ├── 04_OFF-PEAK-plot.R ├── README.md ├── data ├── data-hg19.RData ├── data-hg38.RData ├── hg19_ctgPos2.tsv ├── hg19_ncbiRefSeq.tsv.gz ├── hg38_ctgPos2.tsv └── hg38_ncbiRefSeq.tsv.gz └── subscripts ├── annotate-off-targets.R └── annotate-targets.R /01_targets-processing.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/01_targets-processing.sh -------------------------------------------------------------------------------- /02_coverage-count.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/02_coverage-count.sh -------------------------------------------------------------------------------- /03_OFF-PEAK.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/03_OFF-PEAK.R -------------------------------------------------------------------------------- /04_OFF-PEAK-plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/04_OFF-PEAK-plot.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/README.md -------------------------------------------------------------------------------- /data/data-hg19.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/data/data-hg19.RData -------------------------------------------------------------------------------- /data/data-hg38.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/data/data-hg38.RData -------------------------------------------------------------------------------- /data/hg19_ctgPos2.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/data/hg19_ctgPos2.tsv -------------------------------------------------------------------------------- /data/hg19_ncbiRefSeq.tsv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/data/hg19_ncbiRefSeq.tsv.gz -------------------------------------------------------------------------------- /data/hg38_ctgPos2.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/data/hg38_ctgPos2.tsv -------------------------------------------------------------------------------- /data/hg38_ncbiRefSeq.tsv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/data/hg38_ncbiRefSeq.tsv.gz -------------------------------------------------------------------------------- /subscripts/annotate-off-targets.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/subscripts/annotate-off-targets.R -------------------------------------------------------------------------------- /subscripts/annotate-targets.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/mquinodo/OFF-PEAK/HEAD/subscripts/annotate-targets.R --------------------------------------------------------------------------------