├── .Rbuildignore ├── .git.zip ├── .gitattributes ├── .gitignore ├── DESCRIPTION ├── License.txt ├── NAMESPACE ├── NicheMapR.Rproj ├── R ├── COND_ecto.R ├── CONV.R ├── CONV_ecto.R ├── CampNormTbl9_1.R ├── Cosby1984Tbl4.R ├── Cosby1984Tbl5.R ├── DEB.R ├── DEB_const.R ├── DEB_euler.R ├── DEB_var.R ├── DRYAIR.R ├── FUN_ecto.R ├── GEOM.R ├── GEOM_ecto.R ├── GET_SHAPES.R ├── HomoTherm.R ├── HomoTherm_var.R ├── IRPROP.R ├── MET_ecto.R ├── NESTCALC.R ├── RADIN_ecto.R ├── RADOUT_ecto.R ├── RESP_ecto.R ├── SCAN_FordDryLake_2015.R ├── SCANsites.R ├── SEVAP.R ├── SEVAP_ecto.R ├── SIMULSOL.R ├── SOLAR.R ├── SOLAR_ecto.R ├── SOLVENDO.R ├── VAPPRS.R ├── WATERPROP.R ├── WETAIR.R ├── WETAIR.dp.R ├── WETAIR.rh.R ├── WETAIR.wb.R ├── Weathers1976Fig1.R ├── Weathers1976Fig2.R ├── Weathers1976Fig3.R ├── Weathers1976Fig5.R ├── ZBRENT.R ├── build.global.climate.R ├── crudat2raster.R ├── ectoR_devel.R ├── ectorun.R ├── ectotherm.R ├── egg_water.R ├── ellipsoid_endo.R ├── endoR.R ├── endoR_devel.R ├── gads.R ├── get.global.climate.R ├── get.longlat.R ├── get_clo.R ├── get_heights.R ├── get_p_wet.R ├── get_pressure.R ├── get_profile.R ├── get_terra.R ├── leaf_temperature.R ├── leapfix.R ├── micro_access_s2.R ├── micro_aust.R ├── micro_era5.R ├── micro_global.R ├── micro_ncep.R ├── micro_nz.R ├── micro_openmeteo.R ├── micro_silo.R ├── micro_terra.R ├── micro_uk.R ├── micro_usa.R ├── microrun.R ├── onelump.R ├── onelump_var.R ├── pedotransfer.R ├── plantgro.R ├── plot_human.R ├── rundeb.R ├── rungads.R ├── trans_behav.R ├── twolump.R └── water_metabolism.R ├── README.md ├── data ├── CampNormTbl9_1.RData ├── Cosby1984Tbl4.RData ├── Cosby1984Tbl5.RData ├── PropAirTable10.RData ├── PropAirTable11.RData ├── PropAirTable12.RData ├── SCAN_FordDryLake_2015.RData ├── SCANsites.RData ├── Weathers1976Fig1.RData ├── Weathers1976Fig2.RData ├── Weathers1976Fig3.RData └── Weathers1976Fig5.RData ├── inst ├── doc │ ├── Campbell_SPAC_infiltration.R │ ├── Campbell_SPAC_infiltration.Rmd │ ├── Campbell_SPAC_infiltration.html │ ├── deb-model-tutorial.R │ ├── deb-model-tutorial.Rmd │ ├── deb-model-tutorial.html │ ├── ectotherm-model-tutorial.R │ ├── ectotherm-model-tutorial.Rmd │ ├── ectotherm-model-tutorial.html │ ├── endotherm-components-tutorial.R │ ├── endotherm-components-tutorial.Rmd │ ├── endotherm-components-tutorial.html │ ├── endotherm-model-equations.R │ ├── endotherm-model-equations.Rmd │ ├── endotherm-model-equations.html │ ├── endotherm-model-tutorial.R │ ├── endotherm-model-tutorial.Rmd │ ├── endotherm-model-tutorial.html │ ├── leaf-temperature-tutorial.R │ ├── leaf-temperature-tutorial.Rmd │ ├── leaf-temperature-tutorial.html │ ├── microclimate-IO.R │ ├── microclimate-IO.Rmd │ ├── microclimate-IO.html │ ├── microclimate-hourly-input-example.R │ ├── microclimate-hourly-input-example.Rmd │ ├── microclimate-hourly-input-example.html │ ├── microclimate-model-theory-equations.R │ ├── microclimate-model-theory-equations.Rmd │ ├── microclimate-model-theory-equations.html │ ├── microclimate-model-tutorial.R │ ├── microclimate-model-tutorial.Rmd │ ├── microclimate-model-tutorial.html │ ├── microclimate-monthly-input-example.R │ ├── microclimate-monthly-input-example.Rmd │ ├── microclimate-monthly-input-example.html │ ├── microclimate_inputs.R │ ├── microclimate_inputs.Rmd │ ├── microclimate_inputs.html │ ├── properties-of-air.R │ ├── properties-of-air.Rmd │ ├── properties-of-air.html │ ├── transient-equation-derivations.R │ ├── transient-equation-derivations.Rmd │ └── transient-equation-derivations.html └── extdata │ ├── extback.dat │ ├── glodat │ ├── summer.dat │ └── winter.dat │ ├── optdat │ ├── ins00 │ ├── inso00 │ ├── inso00ab │ ├── inso00co │ ├── miam00 │ ├── micm00 │ ├── minm00 │ ├── mitr00 │ ├── soot00 │ ├── ssam00 │ ├── ssam50 │ ├── ssam70 │ ├── ssam80 │ ├── ssam90 │ ├── ssam95 │ ├── ssam98 │ ├── ssam99 │ ├── sscm00 │ ├── sscm50 │ ├── sscm70 │ ├── sscm80 │ ├── sscm90 │ ├── sscm95 │ ├── sscm98 │ ├── sscm99 │ ├── suso00 │ ├── suso50 │ ├── suso70 │ ├── suso80 │ ├── suso90 │ ├── suso95 │ ├── suso98 │ ├── suso99 │ ├── waso00 │ ├── waso50 │ ├── waso70 │ ├── waso80 │ ├── waso90 │ ├── waso95 │ ├── waso98 │ └── waso99 │ └── profiles.dat ├── man ├── COND_ecto.Rd ├── CONV_ENDO.Rd ├── CONV_ecto.Rd ├── CampNormTbl9_1.Rd ├── Cosby1984Tbl4.Rd ├── Cosby1984Tbl5.Rd ├── DEB.Rd ├── DEB_const.Rd ├── DEB_euler.Rd ├── DEB_var.Rd ├── DRYAIR.Rd ├── FUN_ecto.Rd ├── GEOM_ENDO.Rd ├── GEOM_ecto.Rd ├── GET_SHAPES.Rd ├── HomoTherm.Rd ├── HomoTherm_var.Rd ├── IRPROP.Rd ├── MET_ecto.Rd ├── NESTCALC.Rd ├── RADIN_ecto.Rd ├── RADOUT_ecto.Rd ├── RESP_ecto.Rd ├── SCAN_FordDryLake_2015.Rd ├── SCANsites.Rd ├── SEVAP_ENDO.Rd ├── SEVAP_ecto.Rd ├── SIMULSOL.Rd ├── SOLAR_ENDO.Rd ├── SOLAR_ecto.Rd ├── SOLVENDO.Rd ├── VAPPRS.Rd ├── WATERPROP.Rd ├── WETAIR.Rd ├── WETAIR.dp.Rd ├── WETAIR.rh.Rd ├── WETAIR.wb.Rd ├── Weathers1976Fig1.Rd ├── Weathers1976Fig2.Rd ├── Weathers1976Fig3.Rd ├── Weathers1976Fig5.Rd ├── ZBRENT_ENDO.Rd ├── build.global.climate.Rd ├── crudat2raster.Rd ├── ectoR_devel.Rd ├── ectorun.Rd ├── ectotherm.Rd ├── egg_water.Rd ├── ellipsoid.Rd ├── endoR.Rd ├── endoR_devel.Rd ├── gads.r.Rd ├── get.global.climate.Rd ├── get.longlat.Rd ├── get_clo.Rd ├── get_heights.Rd ├── get_p_wet.Rd ├── get_pressure.Rd ├── get_profile.Rd ├── get_terra.Rd ├── leaf_temperature.Rd ├── leapfix.Rd ├── micro_access_s2.Rd ├── micro_aust.Rd ├── micro_era5.Rd ├── micro_global.Rd ├── micro_ncep.Rd ├── micro_nz.Rd ├── micro_openmeteo.Rd ├── micro_silo.Rd ├── micro_terra.Rd ├── micro_uk.Rd ├── micro_usa.Rd ├── microclimate.Rd ├── onelump.Rd ├── onelump_var.Rd ├── pedotransfer.Rd ├── plantgro.Rd ├── plot_human.Rd ├── rundeb.Rd ├── rungads.Rd ├── trans_behav.Rd ├── twolump.Rd └── water_metabolism.Rd ├── src ├── AACOMMONDAT.f ├── ABOVEGROUND.f ├── ADJREC.f ├── BELOWGROUND.f ├── BLKDATA.f ├── BREED.f ├── BTRFLGEOM.f ├── BURROWIN.f ├── COMMONDAT.f ├── COND.f ├── CONV.f ├── CONV_ENDO.f ├── DCHXY.f ├── DEB.f ├── DEB_BABY.f ├── DEB_EULER.f ├── DEB_HOLO.f ├── DEVRESET.f ├── DEXPI.f ├── DGET_AELES.f ├── DGET_AVELHS.f ├── DGET_DEB.f ├── DGET_EEES.f ├── DGET_ELH.f ├── DGET_PSI.f ├── DOPRI5.f ├── DRYAIR.f ├── DSUB.f ├── ECTOTHERM.f ├── ERRMSG.f ├── EVALXZ.f ├── EVAP.f ├── FUN.f ├── FUNC.f ├── FUNSKIN.f ├── FUNWING.f ├── GAMMA.f ├── GEOM.f ├── GEOM_ENDO.f ├── GETKFUR.f ├── GET_SHAPES.f ├── INFIL.f ├── INPUT.for ├── IOSOLR.f ├── IRPROP.f ├── ISPLINE.f90 ├── MET.f ├── MICRO.f ├── MICROCLIMATE.f ├── MICROSEGMT.f ├── ONELUMP.f ├── OSUB.f ├── PARECT.f ├── PHOTOPERIOD.f ├── POLINT.f ├── QROMB.f ├── RADIN.f ├── RADOUT.f ├── RELHUMID.f ├── RESP.f ├── RESPFUN.f ├── RYTREC.f ├── SEAWATER.f ├── SELDEP.f ├── SEVAP.f ├── SEVAP_ENDO.f ├── SFODE.f ├── SHADEADJUST.f ├── SIMULSOL.f ├── SINEC.f ├── SNOWLAYER.f ├── SOILPROPS.f ├── SOLAR.f ├── SOLAR_ENDO.f ├── SOLOUT.f ├── SOLRAD.f ├── SOLVENDO.f ├── SPLINE.f90 ├── TAB.f ├── THERMO.f ├── TIMCON.f ├── TRAPHR.f ├── TRAPZD.f ├── VAPPRS.f ├── VSINE.f ├── WATER.f ├── WETAIR.f ├── WINGS.f ├── WING_SOLAR.f ├── ZBRAC.f ├── ZBRENT.f ├── ZBRENT_ENDO.f ├── aacommondat.mod ├── commondat.mod └── gads.f └── vignettes ├── ALTFCT.csv ├── Bat_System_Diagram.jpg ├── Campbell_SPAC_infiltration.Rmd ├── DEB_mass_budget.png ├── DEB_scheme.png ├── EndoR_scheme.jpg ├── Endo_System_Diagram.jpg ├── Eulamprus_tympanum.png ├── Fig1.png ├── Gas_System_Diagram.jpg ├── Lizard_System_Diagram1.jpg ├── Lizard_System_Diagram2.jpg ├── Lizard_System_Diagram3.jpg ├── OPTICAL.csv ├── OZ.csv ├── SPAC.jpg ├── SPAC_figure2.jpg ├── SPAC_figure3.jpg ├── deb-model-tutorial.R ├── deb-model-tutorial.Rmd ├── deb-model-tutorial_files └── figure-html │ ├── fig1-1.png │ ├── fig2-1.png │ ├── fig3-1.png │ ├── fig4-1.png │ ├── fig5-1.png │ └── fig6-1.png ├── ectotherm-model-tutorial.Rmd ├── endotherm-components-tutorial.Rmd ├── endotherm-model-equations.Rmd ├── endotherm-model-tutorial.Rmd ├── leaf-temperature-tutorial.Rmd ├── microclimate-IO.Rmd ├── microclimate-hourly-input-example.Rmd ├── 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