├── .gitignore ├── DPMM_Gibbs ├── 1.png ├── 10.png ├── 11.png ├── 12.png ├── 13.png ├── 14.png ├── 2.png ├── 3.png ├── 4.png ├── 5.png ├── 6.png ├── 7.png ├── 8.png ├── 9.png ├── main.py ├── original1.0.png └── training_set_1.0.pkl ├── DPMM_MaxFilter ├── .DS_Store ├── 100PTS_putative_result_10particles_30path.pkl copy ├── FIGURES │ ├── .DS_Store │ └── seed174_300pts_putative_10particles │ │ └── .DS_Store ├── SpikingSorting │ ├── .DS_Store │ └── thirdparty │ │ ├── .DS_Store │ │ ├── @dirichlet │ │ ├── char.m │ │ ├── dimension.m │ │ ├── dirichlet.m │ │ ├── display.m │ │ ├── fit.m │ │ ├── get.m │ │ ├── length.m │ │ ├── lnpdf.m │ │ ├── pdf.m │ │ ├── plot.m │ │ ├── sample.m │ │ ├── set.m │ │ ├── subsasgn.m │ │ └── subsref.m │ │ ├── @distribution │ │ ├── distribution.m │ │ ├── lp.m │ │ ├── p.m │ │ └── plot.m │ │ ├── @gaussian │ │ ├── char.m │ │ ├── dimension.m │ │ ├── display.m │ │ ├── fit.m │ │ ├── gaussian.m │ │ ├── get.m │ │ ├── length.m │ │ ├── lp.m │ │ ├── multinomial.m │ │ ├── p.m │ │ ├── plus.m │ │ ├── private │ │ │ └── fvnlp.m │ │ ├── sample.m │ │ ├── set.m │ │ ├── subsasgn.m │ │ └── subsref.m │ │ ├── @gaussian_mixture_model │ │ ├── gaussian_mixture_model.m │ │ ├── plot.m │ │ └── train.m │ │ ├── @multinomial │ │ ├── char.m │ │ ├── display.m │ │ ├── fit.m │ │ ├── get.m │ │ ├── length.m │ │ ├── lp.m │ │ ├── multinomial.m │ │ ├── p.m │ │ ├── private │ │ │ ├── fvnlp.m │ │ │ └── msum.m │ │ ├── sample.m │ │ ├── set.m │ │ ├── size.m │ │ ├── subsasgn.m │ │ └── subsref.m │ │ ├── collapsed_gibbs_sampler.m │ │ ├── example.m │ │ ├── find_optimal_c.m │ │ ├── heldoutLikelihood.m │ │ ├── heldout_helper.m │ │ ├── logsumexp.m │ │ ├── lp_crp.m │ │ ├── lp_mvniw.m │ │ ├── lp_tpp_helper.m │ │ ├── maxfilter_resample.m │ │ ├── maxfilter_resample_nonunique.m │ │ ├── maxfilter_resample_original.m │ │ ├── mccExcludedFiles.log │ │ ├── multinomial_resample.m │ │ ├── particle_filter.m │ │ ├── plot_mixture.m │ │ ├── readme.txt │ │ ├── results │ │ ├── .DS_Store │ │ ├── aug27_maxfilter_100particles.fig │ │ ├── aug27_maxfilter_100particles.mat │ │ ├── aug27_multinomial_100particles.mat │ │ ├── aug27_stratified_100particles.mat │ │ └── useless_maxfilter_5000particles_aug18_13.mat │ │ ├── run_test_compile.sh │ │ ├── run_ucla_exp.m │ │ ├── sample_crp.m │ │ ├── sample_igmm_prior.m │ │ ├── secs2hmsstr.m │ │ ├── spike_plot.m │ │ ├── stratified_resample.m │ │ ├── test_compile.app │ │ └── Contents │ │ │ ├── Info.plist │ │ │ ├── MacOS │ │ │ ├── applauncher │ │ │ ├── prelaunch │ │ │ └── test_compile │ │ │ └── Resources │ │ │ ├── English.lproj │ │ │ ├── About.nib │ │ │ ├── MWOpenAccessoryView.nib │ │ │ ├── MWSaveAccessoryView.nib │ │ │ └── MainMenu.nib │ │ │ └── membrane.icns │ │ ├── test_compile.m │ │ ├── times_CSC4.mat │ │ ├── ucla_big_runner.m │ │ └── untitled.fig ├── dataset.jl ├── deprecated_runner.jl ├── maxfilter.jl ├── picloud_runner.py ├── plotter.py ├── putative_runner.jl ├── results │ └── .DS_Store ├── results_100pts_putative_10particles_200rep_30perdatasetorseed │ └── .DS_Store └── smoothing_runner.jl ├── DPMM_SMC ├── .DS_Store ├── backup │ ├── original.png │ ├── runner_v0.jl │ ├── runner_v1.jl │ ├── runner_v2.jl │ ├── runner_v3.jl │ ├── runner_v4.jl │ ├── runner_v4_one_particle.jl │ └── runner_v5_works_gibbs_only_no_lookahead.jl ├── dataset.jl ├── original.png ├── picloud_runner.py ├── plotter.py ├── result.pkl ├── result_1_1particle_10delta_2path.pdf ├── result_1_1particle_10delta_2path.pkl ├── result_1_1particle_10delta_2path.png ├── result_1particles_20delta_1path.pdf ├── result_1particles_20delta_1path.pkl ├── result_1particles_20delta_1path.png ├── result_1particles_2delta_2path.pdf ├── result_1particles_2delta_2path.pkl ├── result_1particles_2delta_2path.png ├── result_1particles_3delta_1path.pdf ├── result_1particles_3delta_1path.pkl ├── result_1particles_3delta_1path.png ├── result_1particles_5delta_2path.pdf ├── result_1particles_5delta_2path.pkl ├── result_1particles_5delta_2path.png ├── result_50particles_3delta_1path.pdf ├── result_50particles_3delta_1path.pkl ├── result_50particles_3delta_1path.png └── runner.jl ├── DPMM_Variational ├── .DS_Store ├── backup │ ├── .DS_Store │ ├── 150_20_50_result_variational_july_20_2013_particles_delta_path.pkl copy │ └── variational_no_lookahead │ │ ├── dataset.jl │ │ ├── gradient.jl │ │ ├── variational_lookahead.jl │ │ └── variational_runner.jl ├── branching_lookahead.jl ├── branching_runner.jl ├── dataset.jl ├── gradient.jl ├── no_lookahead_runner.jl ├── picloud_runner.py ├── plotter.py ├── variational_lookahead.jl └── variational_runner.jl ├── DPMM_Variational_full_support ├── .DS_Store ├── RESULTS │ ├── .DS_Store │ └── aug12_2013_test1 │ │ └── .DS_Store ├── branching_lookahead.jl ├── branching_runner.jl ├── dataset.jl ├── gradient.jl ├── maxfilter.jl ├── media │ └── .DS_Store ├── no_lookahead_runner.jl ├── picloud_runner.py ├── plotter.py ├── variational_lookahead.jl └── variational_runner.jl ├── IHMM_MaxFilter ├── .DS_Store ├── ComputeInferenceError.jl ├── DidacticExample.jl ├── GenerateData.jl ├── HMMSMC.jl ├── HemmingDistance.py ├── HemmingDistance.pyc ├── RunnerMaxFilterIhmm.jl ├── SMCihmm.jl ├── alice_dataprep.jl ├── alice_in_wonderland.txt └── maxFilterihmm.jl ├── README.md ├── nonlinearGaussianSSM ├── .DS_Store ├── README.md ├── lookaheadParticleHMM.jl ├── lookaheadPartilce.jl ├── picloud_runner_nonlinearModel.py ├── plotter.py ├── pmapLoading.jl └── test.jl ├── random_sum.jl ├── test.jl └── thirdparty ├── .DS_Store └── vdpgm ├── README.txt ├── gamma_multivariate_ln.m ├── generate_data.m ├── log_no_w.m ├── log_sum_exp.m ├── logmvtpdf.m ├── mkopts_avdp.m ├── mkopts_bj.m ├── mkopts_bjrnd.m ├── mkopts_cdp.m ├── mkopts_csb.m ├── mkopts_vb.m ├── mkopts_vdp.m ├── variational_lookahead_proposal.m └── vdpgm.m /.gitignore: -------------------------------------------------------------------------------- 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