├── .gitignore ├── MATLAB ├── README.md └── knockoffs_matlab │ ├── +knockoffs │ ├── +create │ │ ├── Contents.m │ │ ├── divideSDP.m │ │ ├── fixed.m │ │ ├── fixed_MinCondCov.m │ │ ├── fixed_SDP.m │ │ ├── fixed_equi.m │ │ ├── gaussian.m │ │ ├── gaussian_sample.m │ │ ├── solveASDP.m │ │ ├── solveEqui.m │ │ └── solveSDP.m │ ├── +private │ │ ├── Contents.m │ │ ├── canonicalSVD.m │ │ ├── cvxBuild.m │ │ ├── decompose.m │ │ └── normc.m │ ├── +stats │ │ ├── +private │ │ │ ├── Contents.m │ │ │ ├── forwardSelection.m │ │ │ ├── forwardSelectionOMP.m │ │ │ ├── forwardSelectionSlow.m │ │ │ ├── forwardSelectionSlowOMP.m │ │ │ ├── lassoMaxLambda.m │ │ │ ├── lassoMaxLambda_binom.m │ │ │ ├── lassoMaxLambda_probit.m │ │ │ └── sequentialfs.m │ │ ├── Contents.m │ │ ├── SqrtLassoIterative_WebPage.m │ │ ├── bvsProbDiff.m │ │ ├── bvsProbDiff2.m │ │ ├── forwardSelection.m │ │ ├── forwardSelectionOMP.m │ │ ├── lassoCoefDiff.m │ │ ├── lassoCoefDiff_bin.m │ │ ├── lassoCoefDiff_bin_refit.m │ │ ├── lassoLambdaDifference.m │ │ ├── lassoLambdaDifference_bin.m │ │ ├── lassoLambdaSignedMax.m │ │ ├── lassoLambdaSignedMax_bin.m │ │ ├── olsCoefDiff.m │ │ ├── randomForest.m │ │ ├── ridgeCoefDiff.m │ │ ├── ridgeCoefDiff_bin.m │ │ ├── sqrtLassoCoefDiff.m │ │ ├── stabilitySignedMax.m │ │ └── stabilitySignedMax_bin.m │ ├── +tests │ │ ├── CreateASDPTest.m │ │ ├── CreateEquiTest.m │ │ ├── CreateGaussian.m │ │ ├── CreateSDPTest.m │ │ ├── FSBenchmark.m │ │ ├── FilterTest.m │ │ ├── ForwardSelectionTest.m │ │ ├── KnockoffTestCase.m │ │ └── LassoTest.m │ ├── Contents.m │ ├── create.m │ ├── filter.m │ ├── select.m │ └── threshold.m │ ├── LICENSE.txt │ ├── README.txt │ └── examples │ ├── examples_advanced.m │ ├── examples_basic.m │ └── examples_fixed.m ├── R ├── README.md └── knockoff │ ├── .Rbuildignore │ ├── DESCRIPTION │ ├── NAMESPACE │ ├── NEWS │ ├── R │ ├── create_fixed.R │ ├── create_gaussian.R │ ├── create_second_order.R │ ├── knockoff.R │ ├── knockoff_filter.R │ ├── solve_asdp.R │ ├── solve_equi.R │ ├── solve_sdp.R │ ├── stats_forward_selection.R │ ├── stats_glmnet.R │ ├── stats_glmnet_cv.R │ ├── stats_lasso.R │ ├── stats_lasso_bin.R │ ├── stats_lasso_cv.R │ ├── stats_lasso_cv_bin.R │ ├── stats_random_forest.R │ ├── stats_sqrt_lasso.R │ ├── stats_stability_selection.R │ └── util.R │ ├── knockoff.Rproj │ ├── man │ ├── create.fixed.Rd │ ├── create.gaussian.Rd │ ├── create.second_order.Rd │ ├── create.solve_asdp.Rd │ ├── create.solve_equi.Rd │ ├── create.solve_sdp.Rd │ ├── create_equicorrelated.Rd │ ├── create_sdp.Rd │ ├── decompose.Rd │ ├── divide.sdp.Rd │ ├── fs.Rd │ ├── knockoff.Rd │ ├── knockoff.filter.Rd │ ├── knockoff.threshold.Rd │ ├── lasso_max_lambda.Rd │ ├── merge.clusters.Rd │ ├── print.knockoff.result.Rd │ ├── stability_selection_importance.Rd │ ├── stat.forward_selection.Rd │ ├── stat.glmnet_coefdiff.Rd │ ├── stat.glmnet_lambdadiff.Rd │ ├── stat.glmnet_lambdasmax.Rd │ ├── stat.lasso_coefdiff.Rd │ ├── stat.lasso_coefdiff_bin.Rd │ ├── 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